Syntaxin
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G18260 AT2G18260 |
| fragaria_vesca | FvH4_1g13020 FvH4_2g09080 FvH4_2g09080 |
| malus_domestica | MD02G1144800.v1.1 MD05G1064700.v1.1 MD15G1259000.v1.1 |
| prunus_persica | Prupe.7G156800_v2.0.a1 Prupe.8G094700_v2.0.a1 Prupe.8G094700_v2.0.a1 |
| pyrus_communis | pycom02g11470 pycom05g05560 pycom15g22740 |
| rosa_chinensis | RchiOBHm_Chr2g0101181 RchiOBHm_Chr6g0264961 |
| rosa_laevigata | RLG00000014227 RLG00000017053 |
| rosa_multiflora | Rmu_co8052262.1_g000001 Rmu_sc0002934.1_g000038 Rmu_sc0006314.1_g000005 |
| rosa_roxburghii | Rroxscaffold_175G00432060 Rroxscaffold_2G00141520 Rroxscaffold_7G00203130 |
| rosa_rugosa | Rorug02G0100400 Rorug02G0100500 Rorug06G0014100 |
| rosa_samantha | Rh2AG144200 Rh2BG149200 Rh2CG150500 Rh2DG149700 Rh6AG135300 Rh6BG132700 Rh6CG131400 Rh6DG118400 |
| rosa_wichuraiana | Rw2G011300 Rw6G011690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 409 |
| AccII | CGCG | 1 cut(s) | 255 |
| AciI | CCGC | 1 cut(s) | 255 |
| AclWI | GGATC | 1 cut(s) | 241 |
| AcoI | YGGCCR | 1 cut(s) | 753 |
| AcsI | RAATTY | 1 cut(s) | 363 |
| AcuI | CTGAAG | 2 cut(s) | 65, 188 |
| AdeI | CACNNNGTG | 1 cut(s) | 722 |
| AfaI | GTAC | 1 cut(s) | 518 |
| AfeI | AGCGCT | 1 cut(s) | 333 |
| AgsI | TTSAA | 5 cut(s) | 89, 329, 583, 590, 743 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 596, 628 |
| AluBI | AGCT | 2 cut(s) | 439, 676 |
| AluI | AGCT | 2 cut(s) | 439, 676 |
| Alw26I | GTCTC | 1 cut(s) | 258 |
| AlwI | GGATC | 1 cut(s) | 241 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 211 |
| Aor51HI | AGCGCT | 1 cut(s) | 333 |
| AoxI | GGCC | 3 cut(s) | 94, 100, 753 |
| ApoI | RAATTY | 1 cut(s) | 363 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 364 |
| AspLEI | GCGC | 1 cut(s) | 334 |
| AspS9I | GGNCC | 2 cut(s) | 64, 402 |
| AsuHPI | GGTGA | 3 cut(s) | 175, 545, 734 |
| AsuII | TTCGAA | 1 cut(s) | 298 |
| AvaII | GGWCC | 2 cut(s) | 64, 402 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 508, 541 |
| BalI | TGGCCA | 1 cut(s) | 755 |
| BbsI | GAAGAC | 2 cut(s) | 611, 732 |
| BccI | CCATC | 3 cut(s) | 265, 422, 445 |
| BceAI | ACGGC | 1 cut(s) | 526 |
| BclI | TGATCA | 1 cut(s) | 351 |
| BcoDI | GTCTC | 1 cut(s) | 258 |
| BfmI | CTRYAG | 1 cut(s) | 520 |
| BfoI | RGCGCY | 1 cut(s) | 335 |
| BglII | AGATCT | 1 cut(s) | 502 |
| Bme18I | GGWCC | 2 cut(s) | 64, 402 |
| BmgT120I | GGNCC | 2 cut(s) | 64, 402 |
| BmsI | GCATC | 1 cut(s) | 361 |
| BpiI | GAAGAC | 2 cut(s) | 611, 732 |
| Bpu10I | CCTNAGC | 1 cut(s) | 440 |
| Bpu14I | TTCGAA | 1 cut(s) | 298 |
| BpuEI | CTTGAG | 2 cut(s) | 448, 491 |
| BsaI | GGTCTC | 1 cut(s) | 258 |
| BsaJI | CCNNGG | 1 cut(s) | 97 |
| BsaWI | WCCGGW | 2 cut(s) | 267, 399 |
| BseDI | CCNNGG | 1 cut(s) | 97 |
| BseGI | GGATG | 2 cut(s) | 276, 376 |
| BseMII | CTCAG | 1 cut(s) | 149 |
| BseRI | GAGGAG | 1 cut(s) | 526 |
| Bsh1236I | CGCG | 1 cut(s) | 255 |
| BshFI | GGCC | 3 cut(s) | 96, 102, 755 |
| BsiSI | CCGG | 2 cut(s) | 268, 400 |
| BslFI | GGGAC | 2 cut(s) | 458, 796 |
| BsmAI | GTCTC | 1 cut(s) | 258 |
| BsmFI | GGGAC | 2 cut(s) | 458, 796 |
| BsnI | GGCC | 3 cut(s) | 96, 102, 755 |
| Bso31I | GGTCTC | 1 cut(s) | 258 |
| Bsp119I | TTCGAA | 1 cut(s) | 298 |
| Bsp143I | GATC | 7 cut(s) | 180, 199, 246, 351, 490, 502, 555 |
| BspACI | CCGC | 1 cut(s) | 255 |
| BspANI | GGCC | 3 cut(s) | 96, 102, 755 |
| BspCNI | CTCAG | 1 cut(s) | 148 |
| BspFNI | CGCG | 1 cut(s) | 255 |
| BspPI | GGATC | 1 cut(s) | 241 |
| BspT104I | TTCGAA | 1 cut(s) | 298 |
| BspTNI | GGTCTC | 1 cut(s) | 258 |
| BssECI | CCNNGG | 1 cut(s) | 97 |
| BssMI | GATC | 7 cut(s) | 180, 199, 246, 351, 490, 502, 555 |
| BssT1I | CCWWGG | 1 cut(s) | 97 |
| Bst4CI | ACNGT | 2 cut(s) | 239, 394 |
| Bst6I | CTCTTC | 4 cut(s) | 171, 213, 738, 815 |
| BstBI | TTCGAA | 1 cut(s) | 298 |
| BstC8I | GCNNGC | 4 cut(s) | 94, 257, 805, 894 |
| BstDEI | CTNAG | 3 cut(s) | 135, 260, 440 |
| BstF5I | GGATG | 2 cut(s) | 276, 376 |
| BstFNI | CGCG | 1 cut(s) | 255 |
| BstH2I | RGCGCY | 1 cut(s) | 335 |
| BstHHI | GCGC | 1 cut(s) | 334 |
| BstKTI | GATC | 7 cut(s) | 183, 202, 249, 354, 493, 505, 558 |
| BstMAI | GTCTC | 1 cut(s) | 258 |
| BstMBI | GATC | 7 cut(s) | 180, 199, 246, 351, 490, 502, 555 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 331 |
| BstSFI | CTRYAG | 1 cut(s) | 520 |
| BstUI | CGCG | 1 cut(s) | 255 |
| BstV2I | GAAGAC | 2 cut(s) | 611, 732 |
| BstX2I | RGATCY | 2 cut(s) | 246, 502 |
| BstYI | RGATCY | 2 cut(s) | 246, 502 |
| BsuRI | GGCC | 3 cut(s) | 96, 102, 755 |
| BtsCI | GGATG | 2 cut(s) | 276, 376 |
| BtsI | GCAGTG | 1 cut(s) | 297 |
| BtsIMutI | CAGTG | 3 cut(s) | 244, 297, 390 |
| Cac8I | GCNNGC | 4 cut(s) | 94, 257, 805, 894 |
| CaiI | CAGNNNCTG | 1 cut(s) | 211 |
| CfoI | GCGC | 1 cut(s) | 334 |
| Cfr13I | GGNCC | 2 cut(s) | 64, 402 |
| Csp6I | GTAC | 1 cut(s) | 517 |
| CviAII | CATG | 4 cut(s) | 448, 638, 649, 697 |
| CviQI | GTAC | 1 cut(s) | 517 |
| DdeI | CTNAG | 3 cut(s) | 135, 260, 440 |
| DpnI | GATC | 7 cut(s) | 182, 201, 248, 353, 492, 504, 557 |
| DpnII | GATC | 7 cut(s) | 180, 199, 246, 351, 490, 502, 555 |
| DraIII | CACNNNGTG | 1 cut(s) | 722 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 409 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 409 |
| EaeI | YGGCCR | 1 cut(s) | 753 |
| Eam1104I | CTCTTC | 4 cut(s) | 171, 213, 738, 815 |
| EarI | CTCTTC | 4 cut(s) | 171, 213, 738, 815 |
| Eco130I | CCWWGG | 1 cut(s) | 97 |
| Eco31I | GGTCTC | 1 cut(s) | 258 |
| Eco32I | GATATC | 1 cut(s) | 655 |
| Eco47I | GGWCC | 2 cut(s) | 64, 402 |
| Eco47III | AGCGCT | 1 cut(s) | 333 |
| Eco57I | CTGAAG | 2 cut(s) | 65, 188 |
| EcoO109I | RGGNCCY | 1 cut(s) | 64 |
| EcoRV | GATATC | 1 cut(s) | 655 |
| EcoT14I | CCWWGG | 1 cut(s) | 97 |
| EcoT22I | ATGCAT | 1 cut(s) | 376 |
| ErhI | CCWWGG | 1 cut(s) | 97 |
| FaeI | CATG | 4 cut(s) | 451, 641, 652, 700 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 63, 95 |
| FaqI | GGGAC | 2 cut(s) | 458, 796 |
| FatI | CATG | 4 cut(s) | 447, 637, 648, 696 |
| FauI | CCCGC | 1 cut(s) | 248 |
| FbaI | TGATCA | 1 cut(s) | 351 |
| FokI | GGATG | 2 cut(s) | 283, 383 |
| GlaI | GCGC | 1 cut(s) | 333 |
| HaeII | RGCGCY | 1 cut(s) | 335 |
| HaeIII | GGCC | 3 cut(s) | 96, 102, 755 |
| HapII | CCGG | 2 cut(s) | 268, 400 |
| HhaI | GCGC | 1 cut(s) | 334 |
| Hin1II | CATG | 4 cut(s) | 451, 641, 652, 700 |
| Hin6I | GCGC | 1 cut(s) | 332 |
| HinP1I | GCGC | 1 cut(s) | 332 |
| HincII | GTYRAC | 1 cut(s) | 397 |
| HindII | GTYRAC | 1 cut(s) | 397 |
| HindIII | AAGCTT | 2 cut(s) | 437, 674 |
| HinfI | GANTC | 2 cut(s) | 275, 432 |
| HpaII | CCGG | 2 cut(s) | 268, 400 |
| HphI | GGTGA | 3 cut(s) | 175, 545, 734 |
| Hpy166II | GTNNAC | 1 cut(s) | 397 |
| Hpy188I | TCNGA | 6 cut(s) | 118, 207, 280, 370, 547, 861 |
| Hpy188III | TCNNGA | 6 cut(s) | 163, 508, 573, 658, 692, 900 |
| Hpy8I | GTNNAC | 1 cut(s) | 397 |
| HpyAV | CCTTC | 3 cut(s) | 55, 260, 377 |
| HpyCH4III | ACNGT | 2 cut(s) | 239, 394 |
| HpyCH4V | TGCA | 4 cut(s) | 374, 488, 527, 761 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 331 |
| HpyF3I | CTNAG | 3 cut(s) | 135, 260, 440 |
| Hsp92II | CATG | 4 cut(s) | 451, 641, 652, 700 |
| HspAI | GCGC | 1 cut(s) | 332 |
| Ksp22I | TGATCA | 1 cut(s) | 351 |
| Kzo9I | GATC | 7 cut(s) | 180, 199, 246, 351, 490, 502, 555 |
| LweI | GCATC | 1 cut(s) | 361 |
| MaeIII | GTNAC | 1 cut(s) | 151 |
| MalI | GATC | 7 cut(s) | 182, 201, 248, 353, 492, 504, 557 |
| MboI | GATC | 7 cut(s) | 180, 199, 246, 351, 490, 502, 555 |
| MflI | RGATCY | 2 cut(s) | 246, 502 |
| MlsI | TGGCCA | 1 cut(s) | 755 |
| MluCI | AATT | 5 cut(s) | 31, 363, 457, 590, 611 |
| MluNI | TGGCCA | 1 cut(s) | 755 |
| MlyI | GAGTC | 1 cut(s) | 441 |
| Mox20I | TGGCCA | 1 cut(s) | 755 |
| Mph1103I | ATGCAT | 1 cut(s) | 376 |
| MroXI | GAANNNNTTC | 1 cut(s) | 364 |
| MscI | TGGCCA | 1 cut(s) | 755 |
| MseI | TTAA | 1 cut(s) | 29 |
| Msp20I | TGGCCA | 1 cut(s) | 755 |
| MspI | CCGG | 2 cut(s) | 268, 400 |
| MvnI | CGCG | 1 cut(s) | 255 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 331 |
| NdeII | GATC | 7 cut(s) | 180, 199, 246, 351, 490, 502, 555 |
| NlaIII | CATG | 4 cut(s) | 451, 641, 652, 700 |
| NmuCI | GTSAC | 1 cut(s) | 151 |
| NsiI | ATGCAT | 1 cut(s) | 376 |
| NspV | TTCGAA | 1 cut(s) | 298 |
| PdmI | GAANNNNTTC | 1 cut(s) | 364 |
| PfeI | GAWTC | 1 cut(s) | 275 |
| PleI | GAGTC | 1 cut(s) | 440 |
| PpsI | GAGTC | 1 cut(s) | 440 |
| PpuMI | RGGWCCY | 1 cut(s) | 64 |
| Psp5II | RGGWCCY | 1 cut(s) | 64 |
| PspPI | GGNCC | 2 cut(s) | 64, 402 |
| PspPPI | RGGWCCY | 1 cut(s) | 64 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 779, 811 |
| PstNI | CAGNNNCTG | 1 cut(s) | 211 |
| PsuI | RGATCY | 2 cut(s) | 246, 502 |
| RsaI | GTAC | 1 cut(s) | 518 |
| RsaNI | GTAC | 1 cut(s) | 517 |
| SaqAI | TTAA | 1 cut(s) | 29 |
| Sau3AI | GATC | 7 cut(s) | 180, 199, 246, 351, 490, 502, 555 |
| Sau96I | GGNCC | 2 cut(s) | 64, 402 |
| SchI | GAGTC | 1 cut(s) | 441 |
| SetI | ASST | 8 cut(s) | 69, 81, 132, 441, 518, 678, 687, 724 |
| SfaNI | GCATC | 1 cut(s) | 361 |
| SfcI | CTRYAG | 1 cut(s) | 520 |
| SfuI | TTCGAA | 1 cut(s) | 298 |
| SinI | GGWCC | 2 cut(s) | 64, 402 |
| SmlI | CTYRAG | 2 cut(s) | 427, 506 |
| SmoI | CTYRAG | 2 cut(s) | 427, 506 |
| Sse9I | AATT | 5 cut(s) | 31, 363, 457, 590, 611 |
| SsiI | CCGC | 1 cut(s) | 255 |
| SspI | AATATT | 1 cut(s) | 739 |
| StyI | CCWWGG | 1 cut(s) | 97 |
| TaaI | ACNGT | 2 cut(s) | 239, 394 |
| TaqI | TCGA | 3 cut(s) | 69, 298, 558 |
| TasI | AATT | 5 cut(s) | 31, 363, 457, 590, 611 |
| TfiI | GAWTC | 1 cut(s) | 275 |
| Tru1I | TTAA | 1 cut(s) | 29 |
| Tru9I | TTAA | 1 cut(s) | 29 |
| TscAI | CASTG | 3 cut(s) | 244, 297, 397 |
| TseFI | GTSAC | 1 cut(s) | 151 |
| Tsp45I | GTSAC | 1 cut(s) | 151 |
| TspDTI | ATGAA | 4 cut(s) | 17, 231, 668, 827 |
| TspRI | CASTG | 3 cut(s) | 244, 297, 397 |
| VpaK11BI | GGWCC | 2 cut(s) | 64, 402 |
| XapI | RAATTY | 1 cut(s) | 363 |
| XmnI | GAANNNNTTC | 1 cut(s) | 364 |
| Zsp2I | ATGCAT | 1 cut(s) | 376 |