Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003203

Physical Location & Seq

Genomic Coordinates Forward (+)

21995078 .. 22002101

Gene Structure 7024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1259000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAATGATTTGATGACCAAATCGTTCTTAAGTTATGTGGAACTGAAGAAACAGGCGCAGAAGGACCTCGAAGCGGATCTTGATGTCGAAACAGGCGCAGGCAAACTCAACCCGTCCGGCCAAGAAAACCTCTCTCAGTTCTTCCAAGAAGTCGGAGCAATCAAGGCCGACATGGAAGAGATCACCAATCTCTTGCACGATCTCCATTGCCTGAACGAAGAGGCAAAGTCCACACACAGCGCCAATATTCTGCACGGGCTTAGAGACCGGATGGAGTCTGACACGGTTGCAGTGCTTCGGAAAGCGAAGATTATCAAGGCGAGGCTCGAAGTGCTTGATCAGTCTAATGCGATCAACAGAAAAATGTCCAATGTGTACAAGGAAGGAAGCACTGCGGATCGGACTAGAATGTCCATCACCGGTGGCTTGAGAGTCAAGTTAAGGGATCTGGTGGACAATTTTCAATATCTGATTCGGATCGAAGGGAAGACGGAACTGGATATGGGGAACAAGGTCCGACACGAGGCGGTGATTGATATCCAAGGAAGTCTGACTAAGCTTCATCAGGTGTTTCTCGACATGGCTGTTTTGGTTGAGGCACAAGGGGAAGACATTGAAAATATCGAAGAGAATGTGGCGAATGCCGGTTATTGCATCAGTGGAGGCACAAACAGTCTTCATTATGCCAGCCAGATGAAGAAGAAGAAGAAGTGGGTTTACTGGGTGTGGGCTGTGGGACTGATTATGTTGACTTGTGGCCAAGTGTCCAAGTGGACAACAAAACAAAACAACTTTCGGCTAATAAATAAACCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko04130 ko04721 map00770 map01100 map04130 map04721

Pfam Domains

Protein Families

CTP_transf_like SNARE Syntaxin

Protein Analysis

273

Amino Acids

30.73

Weight (kDa)

7.71

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	42 - 157	2.4e-27	Syntaxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18260 AT2G18260
fragaria_vesca	FvH4_1g13020 FvH4_2g09080 FvH4_2g09080
malus_domestica	MD02G1144800.v1.1 MD05G1064700.v1.1 MD15G1259000.v1.1
prunus_persica	Prupe.7G156800_v2.0.a1 Prupe.8G094700_v2.0.a1 Prupe.8G094700_v2.0.a1
pyrus_communis	pycom02g11470 pycom05g05560 pycom15g22740
rosa_chinensis	RchiOBHm_Chr2g0101181 RchiOBHm_Chr6g0264961
rosa_laevigata	RLG00000014227 RLG00000017053
rosa_multiflora	Rmu_co8052262.1_g000001 Rmu_sc0002934.1_g000038 Rmu_sc0006314.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432060 Rroxscaffold_2G00141520 Rroxscaffold_7G00203130
rosa_rugosa	Rorug02G0100400 Rorug02G0100500 Rorug06G0014100
rosa_samantha	Rh2AG144200 Rh2BG149200 Rh2CG150500 Rh2DG149700 Rh6AG135300 Rh6BG132700 Rh6CG131400 Rh6DG118400
rosa_wichuraiana	Rw2G011300 Rw6G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	409
AciI	CCGC	3 cut(s)	74, 395, 527
AclWI	GGATC	4 cut(s)	84, 405, 453, 485
AcoI	YGGCCR	2 cut(s)	118, 757
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	2 cut(s)	73, 523
AflII	CTTAAG	1 cut(s)	28
AgeI	ACCGGT	1 cut(s)	419
AgsI	TTSAA	2 cut(s)	464, 617
AluBI	AGCT	1 cut(s)	559
AluI	AGCT	1 cut(s)	559
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	4 cut(s)	84, 405, 453, 485
AoxI	GGCC	3 cut(s)	118, 165, 757
AsiGI	ACCGGT	1 cut(s)	419
AspLEI	GCGC	3 cut(s)	58, 98, 242
AspS9I	GGNCC	2 cut(s)	64, 514
AsuHPI	GGTGA	3 cut(s)	175, 409, 541
AvaII	GGWCC	2 cut(s)	64, 514
BalI	TGGCCA	1 cut(s)	759
BarI	GAAGNNNNNNTAC	2 cut(s)	701, 733
BauI	CACGAG	1 cut(s)	521
BbsI	GAAGAC	3 cut(s)	494, 615, 668
BccI	CCATC	2 cut(s)	265, 422
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	405
BfoI	RGCGCY	1 cut(s)	243
BfrI	CTTAAG	1 cut(s)	28
Bme18I	GGWCC	2 cut(s)	64, 514
BmgT120I	GGNCC	2 cut(s)	64, 514
BmrI	ACTGGG	1 cut(s)	730
BmsI	GCATC	1 cut(s)	663
BmuI	ACTGGG	1 cut(s)	730
BpiI	GAAGAC	3 cut(s)	494, 615, 668
BpuEI	CTTGAG	1 cut(s)	448
BsaBI	GATNNNNATC	2 cut(s)	476, 536
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	541
BsaWI	WCCGGW	2 cut(s)	267, 419
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 523
Bse118I	RCCGGY	2 cut(s)	419, 644
Bse1I	ACTGG	2 cut(s)	501, 725
Bse3DI	GCAATG	1 cut(s)	205
Bse8I	GATNNNNATC	2 cut(s)	476, 536
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	1 cut(s)	276
BseJI	GATNNNNATC	2 cut(s)	476, 536
BseLI	CCNNNNNNNGG	2 cut(s)	73, 523
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	2 cut(s)	501, 725
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	3 cut(s)	120, 167, 759
BshTI	ACCGGT	1 cut(s)	419
BsiSI	CCGG	4 cut(s)	117, 268, 420, 645
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	2 cut(s)	73, 523
BsmAI	GTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	750
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	3 cut(s)	120, 167, 759
Bso31I	GGTCTC	1 cut(s)	258
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 445, 477
BspACI	CCGC	3 cut(s)	74, 395, 527
BspANI	GGCC	3 cut(s)	120, 167, 759
BspCNI	CTCAG	1 cut(s)	148
BspPI	GGATC	4 cut(s)	84, 405, 453, 485
BspTI	CTTAAG	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	205
BsrFI	RCCGGY	2 cut(s)	419, 644
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	2 cut(s)	501, 725
BssAI	RCCGGY	2 cut(s)	419, 644
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 445, 477
BssSI	CACGAG	1 cut(s)	521
BssT1I	CCWWGG	1 cut(s)	541
Bst2BI	CACGAG	1 cut(s)	521
Bst4CI	ACNGT	2 cut(s)	286, 674
Bst6I	CTCTTC	3 cut(s)	171, 213, 621
BstAFI	CTTAAG	1 cut(s)	28
BstAUI	TGTACA	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	100, 688
BstDEI	CTNAG	3 cut(s)	135, 260, 555
BstF5I	GGATG	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	3 cut(s)	58, 98, 242
BstKTI	GATC	8 cut(s)	79, 183, 202, 340, 354, 400, 448, 480
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 445, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 331
BstV2I	GAAGAC	3 cut(s)	494, 615, 668
BstX2I	RGATCY	2 cut(s)	76, 445
BstYI	RGATCY	2 cut(s)	76, 445
BsuRI	GGCC	3 cut(s)	120, 167, 759
BtsCI	GGATG	1 cut(s)	276
BtsI	GCAGTG	2 cut(s)	297, 390
BtsIMutI	CAGTG	3 cut(s)	297, 390, 664
Cac8I	GCNNGC	2 cut(s)	100, 688
CfoI	GCGC	3 cut(s)	58, 98, 242
Cfr10I	RCCGGY	2 cut(s)	419, 644
Cfr13I	GGNCC	2 cut(s)	64, 514
Csp6I	GTAC	1 cut(s)	376
CspAI	ACCGGT	1 cut(s)	419
CviAII	CATG	2 cut(s)	172, 580
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	3 cut(s)	135, 260, 555
DpnI	GATC	8 cut(s)	78, 182, 201, 339, 353, 399, 447, 479
DpnII	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 445, 477
DrdI	GACNNNNNNGTC	1 cut(s)	409
DseDI	GACNNNNNNGTC	1 cut(s)	409
EaeI	YGGCCR	2 cut(s)	118, 757
Eam1104I	CTCTTC	3 cut(s)	171, 213, 621
EarI	CTCTTC	3 cut(s)	171, 213, 621
Eco130I	CCWWGG	1 cut(s)	541
Eco31I	GGTCTC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	2 cut(s)	64, 514
Eco57I	CTGAAG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	541
ErhI	CCWWGG	1 cut(s)	541
FaeI	CATG	2 cut(s)	175, 583
FaiI	YATR	6 cut(s)	36, 173, 503, 581, 684, 746
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	1 cut(s)	750
FatI	CATG	2 cut(s)	171, 579
FbaI	TGATCA	1 cut(s)	337
FokI	GGATG	1 cut(s)	283
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	3 cut(s)	57, 97, 241
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	120, 167, 759
HapII	CCGG	4 cut(s)	117, 268, 420, 645
HhaI	GCGC	3 cut(s)	58, 98, 242
Hin1II	CATG	2 cut(s)	175, 583
Hin6I	GCGC	3 cut(s)	56, 96, 240
HinP1I	GCGC	3 cut(s)	56, 96, 240
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	3 cut(s)	275, 432, 472
HpaII	CCGG	4 cut(s)	117, 268, 420, 645
HphI	GGTGA	3 cut(s)	175, 409, 541
Hpy166II	GTNNAC	6 cut(s)	231, 376, 454, 718, 750, 774
Hpy188I	TCNGA	8 cut(s)	155, 280, 300, 402, 471, 477, 518, 552
Hpy188III	TCNNGA	2 cut(s)	80, 575
Hpy8I	GTNNAC	6 cut(s)	231, 376, 454, 718, 750, 774
HpyAV	CCTTC	3 cut(s)	55, 377, 476
HpyCH4III	ACNGT	2 cut(s)	286, 674
HpyCH4V	TGCA	4 cut(s)	196, 253, 290, 654
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 331
HpyF3I	CTNAG	3 cut(s)	135, 260, 555
Hsp92II	CATG	2 cut(s)	175, 583
HspAI	GCGC	3 cut(s)	56, 96, 240
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 445, 477
LmnI	GCTCC	1 cut(s)	155
LweI	GCATC	1 cut(s)	663
MaeI	CTAG	1 cut(s)	405
MalI	GATC	8 cut(s)	78, 182, 201, 339, 353, 399, 447, 479
MboI	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 445, 477
MflI	RGATCY	2 cut(s)	76, 445
MlsI	TGGCCA	1 cut(s)	759
MluCI	AATT	1 cut(s)	457
MluNI	TGGCCA	1 cut(s)	759
MlyI	GAGTC	2 cut(s)	284, 441
MmeI	TCCRAC	2 cut(s)	133, 541
MnlI	CCTC	7 cut(s)	77, 140, 214, 315, 517, 589, 656
Mox20I	TGGCCA	1 cut(s)	759
MscI	TGGCCA	1 cut(s)	759
MseI	TTAA	2 cut(s)	29, 440
Msp20I	TGGCCA	1 cut(s)	759
MspCI	CTTAAG	1 cut(s)	28
MspI	CCGG	4 cut(s)	117, 268, 420, 645
Mva1269I	GAATGC	1 cut(s)	646
MwoI	GCNNNNNNNGC	2 cut(s)	164, 331
NdeII	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 445, 477
NlaIII	CATG	2 cut(s)	175, 583
PctI	GAATGC	1 cut(s)	646
PfeI	GAWTC	1 cut(s)	472
PinAI	ACCGGT	1 cut(s)	419
PleI	GAGTC	2 cut(s)	283, 440
PpsI	GAGTC	2 cut(s)	283, 440
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
PspPI	GGNCC	2 cut(s)	64, 514
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	76, 445
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SaqAI	TTAA	2 cut(s)	29, 440
Sau3AI	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 445, 477
Sau96I	GGNCC	2 cut(s)	64, 514
SchI	GAGTC	2 cut(s)	284, 441
SetI	ASST	5 cut(s)	69, 132, 516, 561, 570
SfaNI	GCATC	1 cut(s)	663
SgrAI	CRCCGGYG	1 cut(s)	419
SinI	GGWCC	2 cut(s)	64, 514
SmlI	CTYRAG	2 cut(s)	28, 427
SmoI	CTYRAG	2 cut(s)	28, 427
Sse9I	AATT	1 cut(s)	457
SsiI	CCGC	3 cut(s)	74, 395, 527
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	541
TaaI	ACNGT	2 cut(s)	286, 674
TaqI	TCGA	6 cut(s)	69, 87, 327, 480, 576, 624
TasI	AATT	1 cut(s)	457
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	472
Tru1I	TTAA	2 cut(s)	29, 440
Tru9I	TTAA	2 cut(s)	29, 440
TscAI	CASTG	3 cut(s)	297, 397, 664
TspDTI	ATGAA	4 cut(s)	17, 551, 668, 710
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	3 cut(s)	297, 397, 664
Vha464I	CTTAAG	1 cut(s)	28
VpaK11BI	GGWCC	2 cut(s)	64, 514
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.