Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8052262.1

Orthogroup ID

OG0003203

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 562

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8052262.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 562 bp

aaacaggcccagaaggacatggaagctgaacttgacgttgaagcaggcctaggaggacacctcaatcccaaagaccaagagaacctctctcagttctttcatgaagtctcagcaatcaaggtcgatatggaagagataacccatctcttgtatgaccttcaaagcctgaatgaagaggccaaatccactcacagttccaagattctaagagggctaagggacagaatggagtctgatatggctgcggtgcttcgaaaggcccgggttgttaaagcaaggctcgagtctcttgatcagtccaatttgattagtagaaaattgtctgtggattttagggaagggagcactgtggacagaactaggatgtctattacaggtggcttgcgagtcaagttaagggatttgatgtgtgatttccagtctttgagggagaagattgtgtctgatcacaaggaggatctcaagaggaggtactacagtgcagtgggggaaatgccaactgaggaggagctcgaaaagatggtttcggggagtgggaaggttaaaattttcgaggggaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko04130 ko04721 map00770 map01100 map04130 map04721

Pfam Domains

Protein Families

CTP_transf_like SNARE Syntaxin

Protein Analysis

187

Amino Acids

21.31

Weight (kDa)

6.27

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18260 AT2G18260
fragaria_vesca	FvH4_1g13020 FvH4_2g09080 FvH4_2g09080
malus_domestica	MD02G1144800.v1.1 MD05G1064700.v1.1 MD15G1259000.v1.1
prunus_persica	Prupe.7G156800_v2.0.a1 Prupe.8G094700_v2.0.a1 Prupe.8G094700_v2.0.a1
pyrus_communis	pycom02g11470 pycom05g05560 pycom15g22740
rosa_chinensis	RchiOBHm_Chr2g0101181 RchiOBHm_Chr6g0264961
rosa_laevigata	RLG00000014227 RLG00000017053
rosa_multiflora	Rmu_co8052262.1_g000001 Rmu_sc0002934.1_g000038 Rmu_sc0006314.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432060 Rroxscaffold_2G00141520 Rroxscaffold_7G00203130
rosa_rugosa	Rorug02G0100400 Rorug02G0100500 Rorug06G0014100
rosa_samantha	Rh2AG144200 Rh2BG149200 Rh2CG150500 Rh2DG149700 Rh6AG135300 Rh6BG132700 Rh6CG131400 Rh6DG118400
rosa_wichuraiana	Rw2G011300 Rw6G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	1 cut(s)	465
AcsI	RAATTY	1 cut(s)	546
AfaI	GTAC	1 cut(s)	473
AgsI	TTSAA	2 cut(s)	41, 161
AluBI	AGCT	2 cut(s)	26, 511
AluI	AGCT	2 cut(s)	26, 511
Alw21I	GWGCWC	2 cut(s)	347, 513
Alw26I	GTCTC	2 cut(s)	112, 291
AlwI	GGATC	1 cut(s)	465
Ama87I	CYCGRG	2 cut(s)	261, 281
AoxI	GGCC	4 cut(s)	6, 46, 177, 258
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	546
AspA2I	CCTAGG	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	7, 259
AsuC2I	CCSGG	2 cut(s)	262, 263
AsuII	TTCGAA	1 cut(s)	253
AvaI	CYCGRG	2 cut(s)	261, 281
AvrII	CCTAGG	1 cut(s)	49
BaeI	ACNNNNGTAYC	2 cut(s)	463, 496
BanII	GRGCYC	1 cut(s)	513
Bbv12I	GWGCWC	2 cut(s)	347, 513
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	2 cut(s)	150, 514
BclI	TGATCA	2 cut(s)	292, 445
BcnI	CCSGG	2 cut(s)	262, 263
BcoDI	GTCTC	2 cut(s)	112, 291
BfaI	CTAG	2 cut(s)	50, 360
BfmI	CTRYAG	1 cut(s)	475
BisI	GCNGC	1 cut(s)	243
BlnI	CCTAGG	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	2 cut(s)	262, 263
BmeT110I	CYCGRG	2 cut(s)	261, 281
BmgT120I	GGNCC	2 cut(s)	7, 259
BmrFI	CCNGG	2 cut(s)	262, 263
BplI	GAGNNNNNCTC	4 cut(s)	45, 77, 71, 103
Bpu10I	CCTNAGC	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	446
BpuMI	CCSGG	2 cut(s)	262, 263
BsaJI	CCNNGG	2 cut(s)	49, 261
Bse1I	ACTGG	1 cut(s)	418
BseDI	CCNNGG	2 cut(s)	49, 261
BseGI	GGATG	1 cut(s)	369
BseMII	CTCAG	3 cut(s)	104, 123, 492
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	3 cut(s)	481, 518, 521
BseXI	GCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	4 cut(s)	8, 48, 179, 260
BsiHKAI	GWGCWC	2 cut(s)	347, 513
BsiHKCI	CYCGRG	2 cut(s)	261, 281
BsiSI	CCGG	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	233
BsmAI	GTCTC	2 cut(s)	112, 291
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	4 cut(s)	8, 48, 179, 260
BsoBI	CYCGRG	2 cut(s)	261, 281
Bsp119I	TTCGAA	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	347, 513
Bsp143I	GATC	3 cut(s)	292, 445, 457
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	4 cut(s)	8, 48, 179, 260
BspCNI	CTCAG	3 cut(s)	103, 122, 493
BspHI	TCATGA	1 cut(s)	100
BspPI	GGATC	1 cut(s)	465
BspT104I	TTCGAA	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	2 cut(s)	49, 261
BssMI	GATC	3 cut(s)	292, 445, 457
BssT1I	CCWWGG	1 cut(s)	49
Bst4CI	ACNGT	3 cut(s)	194, 349, 479
Bst6I	CTCTTC	2 cut(s)	126, 168
BstBI	TTCGAA	1 cut(s)	253
BstC8I	GCNNGC	2 cut(s)	46, 383
BstDEI	CTNAG	5 cut(s)	90, 109, 206, 215, 501
BstF5I	GGATG	1 cut(s)	369
BstKTI	GATC	3 cut(s)	295, 448, 460
BstMAI	GTCTC	2 cut(s)	112, 291
BstMBI	GATC	3 cut(s)	292, 445, 457
BstSCI	CCNGG	2 cut(s)	260, 261
BstSFI	CTRYAG	1 cut(s)	475
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	4 cut(s)	8, 48, 179, 260
BtsCI	GGATG	1 cut(s)	369
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	3 cut(s)	345, 484, 489
Cac8I	GCNNGC	2 cut(s)	46, 383
CciI	TCATGA	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	7, 259
Cfr9I	CCCGGG	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	2 cut(s)	19, 101
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	5 cut(s)	90, 109, 206, 215, 501
DpnI	GATC	3 cut(s)	294, 447, 459
DpnII	GATC	3 cut(s)	292, 445, 457
Eam1104I	CTCTTC	2 cut(s)	126, 168
EarI	CTCTTC	2 cut(s)	126, 168
Ecl136II	GAGCTC	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	49
Eco147I	AGGCCT	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	513
Eco53kI	GAGCTC	1 cut(s)	511
Eco88I	CYCGRG	2 cut(s)	261, 281
EcoICRI	GAGCTC	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	2 cut(s)	22, 104
FaiI	YATR	5 cut(s)	20, 102, 128, 153, 239
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	18, 100
FbaI	TGATCA	2 cut(s)	292, 445
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	376
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	50, 360
GluI	GCNGC	1 cut(s)	243
HaeIII	GGCC	4 cut(s)	8, 48, 179, 260
HapII	CCGG	1 cut(s)	262
Hin1II	CATG	2 cut(s)	22, 104
HinfI	GANTC	4 cut(s)	202, 230, 284, 387
HpaII	CCGG	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	2 cut(s)	235, 445
Hpy188III	TCNNGA	3 cut(s)	101, 290, 463
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	4 cut(s)	7, 167, 332, 532
HpyCH4III	ACNGT	3 cut(s)	194, 349, 479
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	482
HpyF3I	CTNAG	5 cut(s)	90, 109, 206, 215, 501
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	22, 104
Ksp22I	TGATCA	2 cut(s)	292, 445
Kzo9I	GATC	3 cut(s)	292, 445, 457
LmnI	GCTCC	2 cut(s)	342, 508
LpnPI	CCDG	6 cut(s)	23, 30, 179, 275, 360, 431
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	50, 360
MaeII	ACGT	1 cut(s)	36
MalI	GATC	3 cut(s)	294, 447, 459
MboI	GATC	3 cut(s)	292, 445, 457
MboII	GAAGA	3 cut(s)	143, 185, 445
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	347, 513
MluCI	AATT	3 cut(s)	301, 317, 546
MlyI	GAGTC	3 cut(s)	239, 293, 396
MseI	TTAA	3 cut(s)	270, 395, 543
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	2 cut(s)	262, 263
NciI	CCSGG	2 cut(s)	262, 263
NdeII	GATC	3 cut(s)	292, 445, 457
NlaIII	CATG	2 cut(s)	22, 104
NspV	TTCGAA	1 cut(s)	253
PaeR7I	CTCGAG	1 cut(s)	281
PagI	TCATGA	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	3 cut(s)	238, 292, 395
PpsI	GAGTC	3 cut(s)	238, 292, 395
Psp124BI	GAGCTC	1 cut(s)	513
PspPI	GGNCC	2 cut(s)	7, 259
PspXI	VCTCGAGB	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SacI	GAGCTC	1 cut(s)	513
SaqAI	TTAA	3 cut(s)	270, 395, 543
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	3 cut(s)	292, 445, 457
Sau96I	GGNCC	2 cut(s)	7, 259
SchI	GAGTC	3 cut(s)	239, 293, 396
ScrFI	CCNGG	2 cut(s)	262, 263
SduI	GDGCHC	2 cut(s)	347, 513
SfcI	CTRYAG	1 cut(s)	475
Sfr274I	CTCGAG	1 cut(s)	281
SfuI	TTCGAA	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	281
SmaI	CCCGGG	1 cut(s)	263
SmlI	CTYRAG	2 cut(s)	281, 461
SmoI	CTYRAG	2 cut(s)	281, 461
Sse9I	AATT	3 cut(s)	301, 317, 546
SseBI	AGGCCT	1 cut(s)	48
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	2 cut(s)	50, 360
SstI	GAGCTC	1 cut(s)	513
StuI	AGGCCT	1 cut(s)	48
StyD4I	CCNGG	2 cut(s)	260, 261
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	3 cut(s)	194, 349, 479
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	5 cut(s)	123, 253, 282, 513, 552
TasI	AATT	3 cut(s)	301, 317, 546
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	3 cut(s)	270, 395, 543
Tru9I	TTAA	3 cut(s)	270, 395, 543
TscAI	CASTG	3 cut(s)	352, 484, 489
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	3 cut(s)	89, 117, 186
TspMI	CCCGGG	1 cut(s)	261
TspRI	CASTG	3 cut(s)	352, 484, 489
XapI	RAATTY	1 cut(s)	546
XhoI	CTCGAG	1 cut(s)	281
XmaI	CCCGGG	1 cut(s)	261
XmaJI	CCTAGG	1 cut(s)	49
XspI	CTAG	2 cut(s)	50, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.