Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003203

Physical Location & Seq

Genomic Coordinates Reverse (-)

20761042 .. 20763128

Gene Structure 2087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG132700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAATGATCTAATGACCAAGTCGTTCCTCAGTTACGTTGATCTTAAGAAACAGGCCATGAAAGACATTGAAGCAGAACCTGACTTGGAAATGGGGAAACTTGAGCCTGCTGAAGAACAGAATCTTGCGAAATTTTTTGAAGAAGTGACGGCAATCAAGGCTGACATGGAAGAGATTACGAACCTGCTTCTTGATCTTCAGGACCTGAATGAAGAAACCAAGTCCACTCACAGTGCTAAAGTTCTCAGGGGGCTGAGAGACCGAATCAATGCTGACATGGTTAGTATTCTGAGGAAAGCTAAGAACATTAAAGCAAGATTGGAATCGCTTGATCAGTCTAATATTGCTAACCGAGAGGTGGCTGGGTACAAGGAAGGAAGTCCTGTTGATCGAATGAGGATTTCAGTGACTGGTGGACTGAGAGTCAAGCTGAGAGATATGATGAATGATTTTCTGGCATTGAGAGAACAGATTGTTAAGGAGCACAAAGACGGTCTCAAGAGAAGGTACTATAATGCCACCGGAGAGGAAGCAACTGAAGAAGTGATTGAGAAGATTTTGAGAAGTGGGGAGGTCAAAGTTTTTGAAGGGAAAACAGAGCTGGTGATGGAGAATCAGGAAAGAGATGAGGCCTTGAAGGACTTAAAGAGAAGCTTGACAGAACTGCATCAAGTTTTCCTGGACATGGCGGTGTTGGTTGAAGCACAAGGTGAACAGATTAATGATATCGAAAAGAATGTGGCGGATGCTGGGATTTACATAAGTGGTGGAAACAAGGAACTTCTTCATGCCAAGCAGTTGAAAAAGAAAAGAGGAAAGTGGGTTTGTTGGATTATGGCTTTCGTGCTGGTGGTGTTATTGGTGTGCTTTATTTCCATCATAGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

296

Amino Acids

33.71

Weight (kDa)

5.54

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	39 - 196	1.7e-45	Syntaxin
SNARE	PF05739	238 - 288	2.1e-10	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18260 AT2G18260
fragaria_vesca	FvH4_1g13020 FvH4_2g09080 FvH4_2g09080
malus_domestica	MD02G1144800.v1.1 MD05G1064700.v1.1 MD15G1259000.v1.1
prunus_persica	Prupe.7G156800_v2.0.a1 Prupe.8G094700_v2.0.a1 Prupe.8G094700_v2.0.a1
pyrus_communis	pycom02g11470 pycom05g05560 pycom15g22740
rosa_chinensis	RchiOBHm_Chr2g0101181 RchiOBHm_Chr6g0264961
rosa_laevigata	RLG00000014227 RLG00000017053
rosa_multiflora	Rmu_co8052262.1_g000001 Rmu_sc0002934.1_g000038 Rmu_sc0006314.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432060 Rroxscaffold_2G00141520 Rroxscaffold_7G00203130
rosa_rugosa	Rorug02G0100400 Rorug02G0100500 Rorug06G0014100
rosa_samantha	Rh2AG144200 Rh2BG149200 Rh2CG150500 Rh2DG149700 Rh6AG135300 Rh6BG132700 Rh6CG131400 Rh6DG118400
rosa_wichuraiana	Rw2G011300 Rw6G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	192
AciI	CCGC	2 cut(s)	689, 743
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	3 cut(s)	132, 182, 558
AdeI	CACNNNGTG	1 cut(s)	710
AfaI	GTAC	2 cut(s)	368, 509
AfiI	CCNNNNNNNGG	2 cut(s)	358, 685
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	6 cut(s)	71, 140, 587, 637, 701, 802
AhdI	GACNNNNNGTC	1 cut(s)	422
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	5 cut(s)	299, 430, 601, 654, 884
AluI	AGCT	5 cut(s)	299, 430, 601, 654, 884
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	2 cut(s)	252, 500
AlwNI	CAGNNNCTG	3 cut(s)	80, 205, 410
AoxI	GGCC	2 cut(s)	54, 630
ApoI	RAATTY	1 cut(s)	131
AseI	ATTAAT	1 cut(s)	720
Asp700I	GAANNNNTTC	1 cut(s)	783
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	616, 722
AvaII	GGWCC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	486
BccI	CCATC	2 cut(s)	601, 884
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	680
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	252, 500
BfrI	CTTAAG	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	680
Bme18I	GGWCC	1 cut(s)	202
BmeRI	GACNNNNNGTC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	680
BmsI	GCATC	2 cut(s)	676, 736
BpuEI	CTTGAG	2 cut(s)	122, 482
BsaBI	GATNNNNATC	1 cut(s)	322
BsaI	GGTCTC	2 cut(s)	252, 500
BsaWI	WCCGGW	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 685
Bse1I	ACTGG	1 cut(s)	415
Bse8I	GATNNNNATC	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	680
BseGI	GGATG	1 cut(s)	751
BseJI	GATNNNNATC	1 cut(s)	322
BseLI	CCNNNNNNNGG	2 cut(s)	358, 685
BseMII	CTCAG	6 cut(s)	43, 245, 259, 281, 410, 422
BseNI	ACTGG	1 cut(s)	415
BseYI	CCCAGC	2 cut(s)	362, 749
BshFI	GGCC	2 cut(s)	56, 632
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	522
BslI	CCNNNNNNNGG	2 cut(s)	358, 685
BsmAI	GTCTC	2 cut(s)	252, 500
BsnI	GGCC	2 cut(s)	56, 632
Bso31I	GGTCTC	2 cut(s)	252, 500
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	5 cut(s)	7, 40, 193, 331, 388
BspACI	CCGC	2 cut(s)	689, 743
BspANI	GGCC	2 cut(s)	56, 632
BspCNI	CTCAG	6 cut(s)	42, 246, 258, 282, 411, 423
BspMI	ACCTGC	1 cut(s)	192
BspTI	CTTAAG	1 cut(s)	44
BspTNI	GGTCTC	2 cut(s)	252, 500
BsrI	ACTGG	1 cut(s)	415
BssMI	GATC	5 cut(s)	7, 40, 193, 331, 388
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	2 cut(s)	233, 494
Bst6I	CTCTTC	1 cut(s)	165
BstAFI	CTTAAG	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	7 cut(s)	29, 245, 254, 290, 300, 419, 431
BstF5I	GGATG	1 cut(s)	751
BstKTI	GATC	5 cut(s)	10, 43, 196, 334, 391
BstMAI	GTCTC	2 cut(s)	252, 500
BstMBI	GATC	5 cut(s)	7, 40, 193, 331, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	678
BsuRI	GGCC	2 cut(s)	56, 632
BtsCI	GGATG	1 cut(s)	751
BtsIMutI	CAGTG	2 cut(s)	238, 411
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	108
CaiI	CAGNNNCTG	3 cut(s)	80, 205, 410
Cfr13I	GGNCC	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	367, 508
CviAII	CATG	5 cut(s)	58, 166, 277, 685, 788
CviQI	GTAC	2 cut(s)	367, 508
DdeI	CTNAG	7 cut(s)	29, 245, 254, 290, 300, 419, 431
DpnI	GATC	5 cut(s)	9, 42, 195, 333, 390
DpnII	GATC	5 cut(s)	7, 40, 193, 331, 388
DraIII	CACNNNGTG	1 cut(s)	710
DriI	GACNNNNNGTC	1 cut(s)	422
Eam1104I	CTCTTC	1 cut(s)	165
Eam1105I	GACNNNNNGTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	165
EciI	GGCGGA	1 cut(s)	758
Eco147I	AGGCCT	1 cut(s)	632
Eco31I	GGTCTC	2 cut(s)	252, 500
Eco32I	GATATC	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	202
Eco57I	CTGAAG	3 cut(s)	132, 182, 558
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	678
EcoRV	GATATC	1 cut(s)	727
FaeI	CATG	5 cut(s)	61, 169, 280, 688, 791
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FatI	CATG	5 cut(s)	57, 165, 276, 684, 787
FbaI	TGATCA	1 cut(s)	331
FokI	GGATG	1 cut(s)	758
GsaI	CCCAGC	2 cut(s)	366, 753
HaeIII	GGCC	2 cut(s)	56, 632
HapII	CCGG	1 cut(s)	522
Hin1II	CATG	5 cut(s)	61, 169, 280, 688, 791
HindIII	AAGCTT	1 cut(s)	652
HinfI	GANTC	5 cut(s)	121, 264, 323, 423, 613
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	2 cut(s)	616, 722
Hpy166II	GTNNAC	3 cut(s)	225, 416, 713
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	5 cut(s)	191, 200, 499, 617, 888
Hpy8I	GTNNAC	3 cut(s)	225, 416, 713
HpyAV	CCTTC	4 cut(s)	368, 498, 581, 631
HpyCH4III	ACNGT	2 cut(s)	233, 494
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	667
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	7 cut(s)	29, 245, 254, 290, 300, 419, 431
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	5 cut(s)	61, 169, 280, 688, 791
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	5 cut(s)	7, 40, 193, 331, 388
LmnI	GCTCC	1 cut(s)	481
LweI	GCATC	2 cut(s)	676, 736
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	3 cut(s)	32, 145, 406
MalI	GATC	5 cut(s)	9, 42, 195, 333, 390
MboI	GATC	5 cut(s)	7, 40, 193, 331, 388
MboII	GAAGA	8 cut(s)	125, 152, 182, 188, 224, 551, 565, 776
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	809
MnlI	CCTC	8 cut(s)	38, 285, 349, 390, 520, 565, 622, 806
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	5 cut(s)	45, 309, 477, 644, 720
MslI	CAYNNNNRTG	1 cut(s)	689
MspCI	CTTAAG	1 cut(s)	44
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	5 cut(s)	7, 40, 193, 331, 388
NlaIII	CATG	5 cut(s)	61, 169, 280, 688, 791
NmuCI	GTSAC	2 cut(s)	145, 406
PceI	AGGCCT	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	4 cut(s)	121, 264, 323, 613
PflFI	GACNNNGTC	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	678
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PpuMI	RGGWCCY	1 cut(s)	202
PshBI	ATTAAT	1 cut(s)	720
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	678
PspFI	CCCAGC	2 cut(s)	362, 749
PspGI	CCWGG	1 cut(s)	678
PspPI	GGNCC	1 cut(s)	202
PspPPI	RGGWCCY	1 cut(s)	202
PstNI	CAGNNNCTG	3 cut(s)	80, 205, 410
PsyI	GACNNNGTC	1 cut(s)	19
RsaI	GTAC	2 cut(s)	368, 509
RsaNI	GTAC	2 cut(s)	367, 508
RseI	CAYNNNNRTG	1 cut(s)	689
SaqAI	TTAA	5 cut(s)	45, 309, 477, 644, 720
Sau3AI	GATC	5 cut(s)	7, 40, 193, 331, 388
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	2 cut(s)	676, 736
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	689
SmlI	CTYRAG	3 cut(s)	44, 101, 497
SmoI	CTYRAG	3 cut(s)	44, 101, 497
Sse9I	AATT	1 cut(s)	131
SseBI	AGGCCT	1 cut(s)	632
SsiI	CCGC	2 cut(s)	689, 743
SspI	AATATT	1 cut(s)	343
StuI	AGGCCT	1 cut(s)	632
StyD4I	CCNGG	1 cut(s)	678
TaaI	ACNGT	2 cut(s)	233, 494
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	391, 729
TaqII	GACCGA	1 cut(s)	276
TasI	AATT	1 cut(s)	131
TfiI	GAWTC	4 cut(s)	121, 264, 323, 613
Tru1I	TTAA	5 cut(s)	45, 309, 477, 644, 720
Tru9I	TTAA	5 cut(s)	45, 309, 477, 644, 720
TscAI	CASTG	2 cut(s)	238, 411
TseFI	GTSAC	2 cut(s)	145, 406
Tsp45I	GTSAC	2 cut(s)	145, 406
TspDTI	ATGAA	5 cut(s)	17, 74, 225, 458, 776
TspRI	CASTG	2 cut(s)	238, 411
Tth111I	GACNNNGTC	1 cut(s)	19
Vha464I	CTTAAG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	202
VspI	ATTAAT	1 cut(s)	720
XapI	RAATTY	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.