Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003203

Physical Location & Seq

Genomic Coordinates Reverse (-)

16806876 .. 16807776

Gene Structure 901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAATGATTTGATGACCAAATCGTTCTTAAGTTATGTGGAACTGAAGAAACAGGCGCAGAAGGACCTCGAAGTGGATCTTGATGTCGAAGCAGGCGCAGGCAAACTCAACCCGTCCGGCCAAGAAAACCTCTCTCAGTTCTTCCAAGAAGTCGGAGCAATCAAGGCCGACATGGAAGAGATCAACAATCTCTTGCACGATCTCCAGTGCCTGAACGAAGAGGCAAAGTCCACACACAGCGCCAAGATTCTGCGCGGGCTTAGAGACCGGATGGAGTCTGACATGGTTACAGTGCTTCGGAAAGCGAAGATTATCAAGGCGAGGCTCGAAGCGCTTGATCAGTCTAATGCGATCAACAGAAAAAAGTCCAATGAGTACAAGGAAGGAAGCACTGCGGATCGAACTAGAATGTCCATCACCGGTGGCTTGAGATTTCGGATCATAAGGAACGATCTCAAGAGGAGATACTACAGCGCAACGGGTGATTTGCCATCCGATGAGATGACTGAAAAGATTATTTCTGGAAGCTTGAAAGTTGAGTTGTTCGAAGGGAAGACAGAACTGGATATGGGGAACAAGGTCCGACACGAGGCGGTGATGGATATCCAAAGAAGTCTGACTAAGCTTCATCAGGTGTTTCTCGACATGGCTGTTTTGGTTGAGGCACAAGGGAAAGACATTGAAAATATCGAAGAGAATGTGGCGAATGCTGGTTATTTCATCAGTGGAGGCACAAATAGTCTTCATTATGCCAGCCAGATGAAGAAGAACAAGAAGTGGGTTTACTGGGTGTGGGCTGTGGGACTGATTATACTTATGGTTTGCATTATTTCGATGTTCGCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko04130 ko04721 map00770 map01100 map04130 map04721

Pfam Domains

Protein Families

CTP_transf_like SNARE Syntaxin

Protein Analysis

283

Amino Acids

31.92

Weight (kDa)

6.98

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18260 AT2G18260
fragaria_vesca	FvH4_1g13020 FvH4_2g09080 FvH4_2g09080
malus_domestica	MD02G1144800.v1.1 MD05G1064700.v1.1 MD15G1259000.v1.1
prunus_persica	Prupe.7G156800_v2.0.a1 Prupe.8G094700_v2.0.a1 Prupe.8G094700_v2.0.a1
pyrus_communis	pycom02g11470 pycom05g05560 pycom15g22740
rosa_chinensis	RchiOBHm_Chr2g0101181 RchiOBHm_Chr6g0264961
rosa_laevigata	RLG00000014227 RLG00000017053
rosa_multiflora	Rmu_co8052262.1_g000001 Rmu_sc0002934.1_g000038 Rmu_sc0006314.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432060 Rroxscaffold_2G00141520 Rroxscaffold_7G00203130
rosa_rugosa	Rorug02G0100400 Rorug02G0100500 Rorug06G0014100
rosa_samantha	Rh2AG144200 Rh2BG149200 Rh2CG150500 Rh2DG149700 Rh6AG135300 Rh6BG132700 Rh6CG131400 Rh6DG118400
rosa_wichuraiana	Rw2G011300 Rw6G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	255
AciI	CCGC	3 cut(s)	255, 395, 593
AclWI	GGATC	3 cut(s)	84, 405, 446
AcoI	YGGCCR	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	377
AfeI	AGCGCT	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	73, 589
AflII	CTTAAG	1 cut(s)	28
AgeI	ACCGGT	1 cut(s)	419
AgsI	TTSAA	2 cut(s)	532, 683
AluBI	AGCT	2 cut(s)	528, 625
AluI	AGCT	2 cut(s)	528, 625
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	3 cut(s)	84, 405, 446
AlwNI	CAGNNNCTG	1 cut(s)	211
Aor51HI	AGCGCT	1 cut(s)	333
AoxI	GGCC	2 cut(s)	118, 165
AsiGI	ACCGGT	1 cut(s)	419
AspLEI	GCGC	6 cut(s)	58, 98, 242, 255, 334, 476
AspS9I	GGNCC	2 cut(s)	64, 580
AsuHPI	GGTGA	3 cut(s)	409, 494, 607
AsuII	TTCGAA	1 cut(s)	546
AvaII	GGWCC	2 cut(s)	64, 580
BarI	GAAGNNNNNNTAC	2 cut(s)	767, 799
BauI	CACGAG	1 cut(s)	587
BbsI	GAAGAC	2 cut(s)	560, 734
BccI	CCATC	4 cut(s)	265, 422, 499, 592
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	469
BfoI	RGCGCY	2 cut(s)	243, 335
BfrI	CTTAAG	1 cut(s)	28
Bme18I	GGWCC	2 cut(s)	64, 580
BmgT120I	GGNCC	2 cut(s)	64, 580
BmrI	ACTGGG	1 cut(s)	796
BmuI	ACTGGG	1 cut(s)	796
BpiI	GAAGAC	2 cut(s)	560, 734
BpmI	CTGGAG	1 cut(s)	188
Bpu14I	TTCGAA	1 cut(s)	546
BpuEI	CTTGAG	2 cut(s)	440, 448
BsaBI	GATNNNNATC	1 cut(s)	602
BsaI	GGTCTC	1 cut(s)	258
BsaWI	WCCGGW	2 cut(s)	267, 419
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 589
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	3 cut(s)	205, 567, 791
Bse8I	GATNNNNATC	1 cut(s)	602
BseGI	GGATG	2 cut(s)	276, 491
BseJI	GATNNNNATC	1 cut(s)	602
BseLI	CCNNNNNNNGG	2 cut(s)	73, 589
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	3 cut(s)	205, 567, 791
BseRI	GAGGAG	1 cut(s)	475
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	120, 167
BshTI	ACCGGT	1 cut(s)	419
BsiSI	CCGG	3 cut(s)	117, 268, 420
BslFI	GGGAC	1 cut(s)	816
BslI	CCNNNNNNNGG	2 cut(s)	73, 589
BsmAI	GTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	816
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	2 cut(s)	120, 167
Bso31I	GGTCTC	1 cut(s)	258
Bsp119I	TTCGAA	1 cut(s)	546
Bsp143I	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
BspACI	CCGC	3 cut(s)	255, 395, 593
BspANI	GGCC	2 cut(s)	120, 167
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	255
BspHI	TCATGA	1 cut(s)	845
BspPI	GGATC	3 cut(s)	84, 405, 446
BspT104I	TTCGAA	1 cut(s)	546
BspTI	CTTAAG	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	3 cut(s)	205, 567, 791
BssAI	RCCGGY	1 cut(s)	419
BssMI	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
BssSI	CACGAG	1 cut(s)	587
Bst2BI	CACGAG	1 cut(s)	587
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	3 cut(s)	171, 213, 687
BstAFI	CTTAAG	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	546
BstC8I	GCNNGC	4 cut(s)	94, 100, 257, 754
BstDEI	CTNAG	3 cut(s)	135, 260, 621
BstF5I	GGATG	2 cut(s)	276, 491
BstFNI	CGCG	1 cut(s)	255
BstH2I	RGCGCY	2 cut(s)	243, 335
BstHHI	GCGC	6 cut(s)	58, 98, 242, 255, 334, 476
BstKTI	GATC	8 cut(s)	79, 183, 202, 340, 354, 400, 441, 454
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 331
BstSFI	CTRYAG	1 cut(s)	469
BstUI	CGCG	1 cut(s)	255
BstV2I	GAAGAC	2 cut(s)	560, 734
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	120, 167
BtsCI	GGATG	2 cut(s)	276, 491
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	4 cut(s)	212, 297, 390, 730
Cac8I	GCNNGC	4 cut(s)	94, 100, 257, 754
CaiI	CAGNNNCTG	1 cut(s)	211
CciI	TCATGA	1 cut(s)	845
CfoI	GCGC	6 cut(s)	58, 98, 242, 255, 334, 476
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	64, 580
Csp6I	GTAC	1 cut(s)	376
CspAI	ACCGGT	1 cut(s)	419
CviAII	CATG	4 cut(s)	172, 283, 646, 846
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	3 cut(s)	135, 260, 621
DpnI	GATC	8 cut(s)	78, 182, 201, 339, 353, 399, 440, 453
DpnII	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	3 cut(s)	171, 213, 687
EarI	CTCTTC	3 cut(s)	171, 213, 687
Eco31I	GGTCTC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	604
Eco47I	GGWCC	2 cut(s)	64, 580
Eco47III	AGCGCT	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	604
FaeI	CATG	4 cut(s)	175, 286, 649, 849
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	1 cut(s)	816
FatI	CATG	4 cut(s)	171, 282, 645, 845
FauI	CCCGC	1 cut(s)	248
FbaI	TGATCA	1 cut(s)	337
FokI	GGATG	2 cut(s)	283, 478
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	6 cut(s)	57, 97, 241, 254, 333, 475
GsuI	CTGGAG	1 cut(s)	188
HaeII	RGCGCY	2 cut(s)	243, 335
HaeIII	GGCC	2 cut(s)	120, 167
HapII	CCGG	3 cut(s)	117, 268, 420
HhaI	GCGC	6 cut(s)	58, 98, 242, 255, 334, 476
Hin1II	CATG	4 cut(s)	175, 286, 649, 849
Hin6I	GCGC	6 cut(s)	56, 96, 240, 253, 332, 474
HinP1I	GCGC	6 cut(s)	56, 96, 240, 253, 332, 474
HindIII	AAGCTT	2 cut(s)	526, 623
HinfI	GANTC	2 cut(s)	247, 275
HpaII	CCGG	3 cut(s)	117, 268, 420
HphI	GGTGA	3 cut(s)	409, 494, 607
Hpy166II	GTNNAC	2 cut(s)	231, 784
Hpy188I	TCNGA	7 cut(s)	155, 280, 300, 438, 496, 584, 618
Hpy188III	TCNNGA	5 cut(s)	80, 457, 522, 641, 846
Hpy8I	GTNNAC	2 cut(s)	231, 784
HpyAV	CCTTC	3 cut(s)	55, 377, 542
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	196, 825
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 331
HpyF3I	CTNAG	3 cut(s)	135, 260, 621
Hsp92II	CATG	4 cut(s)	175, 286, 649, 849
HspAI	GCGC	6 cut(s)	56, 96, 240, 253, 332, 474
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
LmnI	GCTCC	1 cut(s)	155
MaeI	CTAG	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	8 cut(s)	78, 182, 201, 339, 353, 399, 440, 453
MboI	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
MflI	RGATCY	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	2 cut(s)	133, 607
MnlI	CCTC	8 cut(s)	77, 140, 214, 315, 453, 583, 655, 722
MseI	TTAA	1 cut(s)	29
MspCI	CTTAAG	1 cut(s)	28
MspI	CCGG	3 cut(s)	117, 268, 420
Mva1269I	GAATGC	1 cut(s)	712
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	164, 331
NdeII	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
NlaIII	CATG	4 cut(s)	175, 286, 649, 849
NspV	TTCGAA	1 cut(s)	546
PagI	TCATGA	1 cut(s)	845
PctI	GAATGC	1 cut(s)	712
PfeI	GAWTC	1 cut(s)	247
PinAI	ACCGGT	1 cut(s)	419
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
PspPI	GGNCC	2 cut(s)	64, 580
PspPPI	RGGWCCY	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	29
Sau3AI	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
Sau96I	GGNCC	2 cut(s)	64, 580
SchI	GAGTC	1 cut(s)	284
SetI	ASST	6 cut(s)	69, 132, 530, 582, 627, 636
SfcI	CTRYAG	1 cut(s)	469
SfuI	TTCGAA	1 cut(s)	546
SgrAI	CRCCGGYG	1 cut(s)	419
SinI	GGWCC	2 cut(s)	64, 580
SmlI	CTYRAG	3 cut(s)	28, 427, 455
SmoI	CTYRAG	3 cut(s)	28, 427, 455
SsiI	CCGC	3 cut(s)	255, 395, 593
SspMI	CTAG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	292
TaqI	TCGA	8 cut(s)	69, 87, 327, 400, 546, 642, 690, 833
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	4 cut(s)	212, 297, 397, 730
TspDTI	ATGAA	5 cut(s)	17, 617, 709, 734, 776
TspRI	CASTG	4 cut(s)	212, 297, 397, 730
Vha464I	CTTAAG	1 cut(s)	28
VpaK11BI	GGWCC	2 cut(s)	64, 580
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.