RLG00000014227

Syntaxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003203
Physical Location & Seq
Forward (+)
49587748 .. 49588946
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014227

Sequence Viewer

Length: 978 bp
ATGAATGATCTAATGACCAAGTCGTTCCTCAGTTACGTTGATCTTAAGAAACAGGCCATGAAAGACATTGAAGCAGAACCTGACTTGGAAATGGGGAAACTTGAGCCTGCTGAAGAGCAGAATCTTGCGAAATTTTTTGAAGAAGTGACGGCAATCAAGGCTGACATGGAAGAGATTACGAACCTGCTTCTTGATCTTCAGGACCTGAATGAAGAAACCAAGTCCACTCACAGTGCTAAAGTTCTTAGGGGGCTGAGAGACCGAATCAATGCTGACATGGTTAGTATTCTGAGGAAAGCTAAGAACATTAAAGCAAGATTGGAATCGCTTGATCAGTCTAATATTGCTAACCGAGAGGTGGCTGGGTACAAGGAAGGAAGTCCTGTTGATCGAATGAGGATTTCAGTGACTGGTGGACTGAGAGTCAAGCTGAGAGATATGATGAATGATTTTCTGGCATTGAGAGAACAGATTGTTAAGGAGCACAAAGACGGTCTCAAGAGAAGGTACTATAATGCCACCGGGGAGGAAGCAACTGAAGAAGTGATTGACAAGATTTTGAGAAGTGGGGAGGTCAAAGTTTTTGAAGGGAAAACAGAGCTGGTGATGGAGAATCAGGAAAGAGATGAGGCCTTGAAGGACTTAAAGAGAAGCTTGACAGAACTGCATCAAGTTTTCCTGGACATGGCGGTGTTGGTTGAAGCACAAGGTGAACAGATTAATGATATCGAAAAGAATGTGGCTGATGCCGGGATTTACATAAGTGGTGGAAACAAGGAACTTCTTGATGCCAAGCAGTTGAAAAAGAAAAGAGGAAGGGTGGACTGGCAGAGGAAAGGGTGCTCTAGCGGAGTTTTGGTAGAGCAATATGTTAGAGAATATCGCTTCATCTTTCCACATAAAGTTTTCTTCTGTAATTTGGATCTTTGCGAACAGATATGTGGATCTGAATGCTTTGTTATGGATGTCTTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

326

Amino Acids

37.27

Weight (kDa)

5.3

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin PF00804 39 - 196 2e-45 Syntaxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 192
AciI CCGC 2 cut(s) 689, 849
AclWI GGATC 2 cut(s) 930, 952
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 3 cut(s) 132, 182, 558
AdeI CACNNNGTG 1 cut(s) 710
AfaI GTAC 2 cut(s) 368, 509
AfiI CCNNNNNNNGG 2 cut(s) 358, 685
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 6 cut(s) 71, 140, 587, 637, 701, 802
AhdI GACNNNNNGTC 1 cut(s) 422
AjnI CCWGG 1 cut(s) 678
AluBI AGCT 4 cut(s) 299, 430, 601, 654
AluI AGCT 4 cut(s) 299, 430, 601, 654
Alw21I GWGCWC 2 cut(s) 486, 845
Alw26I GTCTC 2 cut(s) 252, 500
AlwI GGATC 2 cut(s) 930, 952
AlwNI CAGNNNCTG 3 cut(s) 80, 205, 410
AoxI GGCC 2 cut(s) 54, 630
ApoI RAATTY 1 cut(s) 131
AseI ATTAAT 1 cut(s) 720
AspS9I GGNCC 1 cut(s) 202
AsuC2I CCSGG 2 cut(s) 523, 751
AsuHPI GGTGA 2 cut(s) 616, 722
AvaII GGWCC 1 cut(s) 202
Bbv12I GWGCWC 2 cut(s) 486, 845
BccI CCATC 1 cut(s) 601
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 680
BclI TGATCA 1 cut(s) 331
BcnI CCSGG 2 cut(s) 523, 751
BcoDI GTCTC 2 cut(s) 252, 500
BfaI CTAG 1 cut(s) 846
BfrI CTTAAG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 192
Bme1390I CCNGG 3 cut(s) 523, 680, 751
Bme18I GGWCC 1 cut(s) 202
BmeRI GACNNNNNGTC 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 202
BmrFI CCNGG 3 cut(s) 523, 680, 751
BmsI GCATC 3 cut(s) 676, 736, 778
BpuEI CTTGAG 2 cut(s) 122, 482
BpuMI CCSGG 2 cut(s) 523, 751
BsaBI GATNNNNATC 1 cut(s) 322
BsaI GGTCTC 2 cut(s) 252, 500
BsaJI CCNNGG 1 cut(s) 522
BsaXI ACNNNNNCTCC 2 cut(s) 843, 873
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 685
Bse1I ACTGG 2 cut(s) 415, 830
Bse8I GATNNNNATC 1 cut(s) 322
BseBI CCWGG 1 cut(s) 680
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 1 cut(s) 970
BseJI GATNNNNATC 1 cut(s) 322
BseLI CCNNNNNNNGG 2 cut(s) 358, 685
BseMII CTCAG 5 cut(s) 43, 245, 281, 410, 422
BseNI ACTGG 2 cut(s) 415, 830
BseYI CCCAGC 1 cut(s) 362
BshFI GGCC 2 cut(s) 56, 632
BsiHKAI GWGCWC 2 cut(s) 486, 845
BsiSI CCGG 2 cut(s) 522, 750
BslI CCNNNNNNNGG 2 cut(s) 358, 685
BsmAI GTCTC 2 cut(s) 252, 500
BsmI GAATGC 1 cut(s) 956
BsnI GGCC 2 cut(s) 56, 632
Bso31I GGTCTC 2 cut(s) 252, 500
Bsp1286I GDGCHC 2 cut(s) 486, 845
Bsp143I GATC 7 cut(s) 7, 40, 193, 331, 388, 922, 944
BspACI CCGC 2 cut(s) 689, 849
BspANI GGCC 2 cut(s) 56, 632
BspCNI CTCAG 5 cut(s) 42, 246, 282, 411, 423
BspMI ACCTGC 1 cut(s) 192
BspPI GGATC 2 cut(s) 930, 952
BspQI GCTCTTC 1 cut(s) 108
BspTI CTTAAG 1 cut(s) 44
BspTNI GGTCTC 2 cut(s) 252, 500
BsrI ACTGG 2 cut(s) 415, 830
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 7 cut(s) 7, 40, 193, 331, 388, 922, 944
Bst2UI CCWGG 1 cut(s) 680
Bst4CI ACNGT 2 cut(s) 233, 494
Bst6I CTCTTC 2 cut(s) 108, 165
BstAFI CTTAAG 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 7 cut(s) 29, 245, 254, 290, 300, 419, 431
BstF5I GGATG 1 cut(s) 970
BstKTI GATC 7 cut(s) 10, 43, 196, 334, 391, 925, 947
BstMAI GTCTC 2 cut(s) 252, 500
BstMBI GATC 7 cut(s) 7, 40, 193, 331, 388, 922, 944
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 680
BstSCI CCNGG 3 cut(s) 521, 678, 749
BstX2I RGATCY 2 cut(s) 922, 944
BstYI RGATCY 2 cut(s) 922, 944
BsuRI GGCC 2 cut(s) 56, 632
BtsCI GGATG 1 cut(s) 970
BtsIMutI CAGTG 2 cut(s) 238, 411
BveI ACCTGC 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 108
CaiI CAGNNNCTG 3 cut(s) 80, 205, 410
Cfr13I GGNCC 1 cut(s) 202
Csp6I GTAC 2 cut(s) 367, 508
CviAII CATG 4 cut(s) 58, 166, 277, 685
CviQI GTAC 2 cut(s) 367, 508
DdeI CTNAG 7 cut(s) 29, 245, 254, 290, 300, 419, 431
DpnI GATC 7 cut(s) 9, 42, 195, 333, 390, 924, 946
DpnII GATC 7 cut(s) 7, 40, 193, 331, 388, 922, 944
DraIII CACNNNGTG 1 cut(s) 710
DriI GACNNNNNGTC 1 cut(s) 422
Eam1104I CTCTTC 2 cut(s) 108, 165
Eam1105I GACNNNNNGTC 1 cut(s) 422
EarI CTCTTC 2 cut(s) 108, 165
Eco147I AGGCCT 1 cut(s) 632
Eco31I GGTCTC 2 cut(s) 252, 500
Eco32I GATATC 1 cut(s) 727
Eco47I GGWCC 1 cut(s) 202
Eco57I CTGAAG 3 cut(s) 132, 182, 558
EcoO109I RGGNCCY 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 678
EcoRV GATATC 1 cut(s) 727
FaeI CATG 4 cut(s) 61, 169, 280, 688
FalI AAGNNNNNCTT 2 cut(s) 638, 670
FatI CATG 4 cut(s) 57, 165, 276, 684
FbaI TGATCA 1 cut(s) 331
FspBI CTAG 1 cut(s) 846
GsaI CCCAGC 1 cut(s) 366
HaeIII GGCC 2 cut(s) 56, 632
HapII CCGG 2 cut(s) 522, 750
Hin1II CATG 4 cut(s) 61, 169, 280, 688
HindIII AAGCTT 1 cut(s) 652
HinfI GANTC 5 cut(s) 121, 264, 323, 423, 613
HpaII CCGG 2 cut(s) 522, 750
HphI GGTGA 2 cut(s) 616, 722
Hpy166II GTNNAC 4 cut(s) 225, 416, 713, 823
Hpy188I TCNGA 3 cut(s) 291, 949, 977
Hpy188III TCNNGA 5 cut(s) 191, 200, 499, 617, 785
Hpy8I GTNNAC 4 cut(s) 225, 416, 713, 823
HpyAV CCTTC 5 cut(s) 368, 498, 581, 631, 810
HpyCH4III ACNGT 2 cut(s) 233, 494
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 667
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 7 cut(s) 29, 245, 254, 290, 300, 419, 431
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 4 cut(s) 61, 169, 280, 688
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 7 cut(s) 7, 40, 193, 331, 388, 922, 944
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 481
LweI GCATC 3 cut(s) 676, 736, 778
MaeI CTAG 1 cut(s) 846
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 3 cut(s) 32, 145, 406
MalI GATC 7 cut(s) 9, 42, 195, 333, 390, 924, 946
MboI GATC 7 cut(s) 7, 40, 193, 331, 388, 922, 944
MboII GAAGA 7 cut(s) 125, 152, 182, 188, 224, 551, 901
MflI RGATCY 2 cut(s) 922, 944
MhlI GDGCHC 2 cut(s) 486, 845
MluCI AATT 2 cut(s) 131, 916
MlyI GAGTC 1 cut(s) 432
MnlI CCTC 9 cut(s) 38, 285, 349, 390, 520, 565, 622, 806, 825
MseI TTAA 5 cut(s) 45, 309, 477, 644, 720
MslI CAYNNNNRTG 1 cut(s) 689
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 2 cut(s) 522, 750
MspR9I CCNGG 3 cut(s) 523, 680, 751
Mva1269I GAATGC 1 cut(s) 956
MvaI CCWGG 1 cut(s) 680
MwoI GCNNNNNNNGC 1 cut(s) 158
NciI CCSGG 2 cut(s) 523, 751
NdeII GATC 7 cut(s) 7, 40, 193, 331, 388, 922, 944
NlaIII CATG 4 cut(s) 61, 169, 280, 688
NmuCI GTSAC 2 cut(s) 145, 406
PceI AGGCCT 1 cut(s) 632
PciSI GCTCTTC 1 cut(s) 108
PctI GAATGC 1 cut(s) 956
PfeI GAWTC 4 cut(s) 121, 264, 323, 613
PflFI GACNNNGTC 1 cut(s) 19
PfoI TCCNGGA 1 cut(s) 678
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
PpuMI RGGWCCY 1 cut(s) 202
PshBI ATTAAT 1 cut(s) 720
Psp5II RGGWCCY 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 678
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 1 cut(s) 678
PspPI GGNCC 1 cut(s) 202
PspPPI RGGWCCY 1 cut(s) 202
PstNI CAGNNNCTG 3 cut(s) 80, 205, 410
PsuI RGATCY 2 cut(s) 922, 944
PsyI GACNNNGTC 1 cut(s) 19
RsaI GTAC 2 cut(s) 368, 509
RsaNI GTAC 2 cut(s) 367, 508
RseI CAYNNNNRTG 1 cut(s) 689
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 5 cut(s) 45, 309, 477, 644, 720
Sau3AI GATC 7 cut(s) 7, 40, 193, 331, 388, 922, 944
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 3 cut(s) 523, 680, 751
SduI GDGCHC 2 cut(s) 486, 845
SfaNI GCATC 3 cut(s) 676, 736, 778
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 689
SmlI CTYRAG 3 cut(s) 44, 101, 497
SmoI CTYRAG 3 cut(s) 44, 101, 497
Sse9I AATT 2 cut(s) 131, 916
SseBI AGGCCT 1 cut(s) 632
SsiI CCGC 2 cut(s) 689, 849
SspI AATATT 1 cut(s) 343
SspMI CTAG 1 cut(s) 846
StuI AGGCCT 1 cut(s) 632
StyD4I CCNGG 3 cut(s) 521, 678, 749
TaaI ACNGT 2 cut(s) 233, 494
TaiI ACGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 391, 729
TaqII GACCGA 1 cut(s) 276
TasI AATT 2 cut(s) 131, 916
TfiI GAWTC 4 cut(s) 121, 264, 323, 613
Tru1I TTAA 5 cut(s) 45, 309, 477, 644, 720
Tru9I TTAA 5 cut(s) 45, 309, 477, 644, 720
TscAI CASTG 2 cut(s) 238, 411
TseFI GTSAC 2 cut(s) 145, 406
Tsp45I GTSAC 2 cut(s) 145, 406
TspDTI ATGAA 5 cut(s) 17, 74, 225, 458, 877
TspRI CASTG 2 cut(s) 238, 411
Tth111I GACNNNGTC 1 cut(s) 19
Vha464I CTTAAG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 202
VspI ATTAAT 1 cut(s) 720
XapI RAATTY 1 cut(s) 131
XspI CTAG 1 cut(s) 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.