Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003203

Physical Location & Seq

Genomic Coordinates Forward (+)

13094652 .. 13096673

Gene Structure 2022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG150500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAATGATTTGATGACCAAATCGTTCTTAAATTATGTGGACCTGAAGAAACAGGCCCAGAAGGACATGGAAGCCGAACTTGACGTTGAAGCTGGCCTAGGAGGACACCTCAATCCCAAAGACCAAGAGAACCTCTCTCAGTTCTTTCATGAAGTCTCAGCAATCAAGGTCGATATGGAAGAGATAACCCATCTCTTGTATGACCTTCAAAGCCTGAATGAAGAGGCCAAATCCACTCACAGTTCCAAGATTCTAAGAGGGCTAAGGGACAGAATGGAGTCTGATATGGCTGCGGTGCTTCGAAAGGCCCGGGTTGTTAAAGCAAGGCTCGAGTCTCTTGATCAGTCCAATTTGATTAGTAGAAAATTGTCTGTGGATTTTAGGGAAGGGAGCACTGTGGACAGAACTAGGATGTCTATTACAGGTGGCTTGCGAGTCAAGTTAAGGGATTTGATGTGTGATTTCCAGTCTTTGAGGGAGAAGATTGTGTCTGATCACAAGGAGGATCTCAAGAGGAGGTACTACAGTGCAGTGGGGGAAATGCCAACTGAGGAGGAGCTCGAAAAGATGGTTTCGGGGAGTGGGAAGGTTAAAATTTTCGAGGGGAAGGGTGAGTTGGAAATTGGGAACAAAGTCAGGCATGAGGCAGTGATGGACATTCAGAGGAGCTTGACTAAGCTGCATCAGGTATTTCTTGACATGGCTGTGCTGGTTGAGGCACAAGGTGAACAGATTGACAATATTGAAGAGAATGTAGCCATTGGGGGAAAGTATATCAGTGGTGGCACTAATAGTCTGCACTATGCTAAGCAGATGCAGAAGAAGAATAACAAATGGGTGCTTTGGCTTTGTGCTGTGGTGCTGATTATATTTCTGGTGTGCTTAATTTCAATGCTGGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko04130 ko04721 map00770 map01100 map04130 map04721

Pfam Domains

Protein Families

CTP_transf_like SNARE Syntaxin

Protein Analysis

301

Amino Acids

34.18

Weight (kDa)

6.28

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	43 - 201	1.4e-42	Syntaxin
SNARE	PF05739	243 - 293	1e-07	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18260 AT2G18260
fragaria_vesca	FvH4_1g13020 FvH4_2g09080 FvH4_2g09080
malus_domestica	MD02G1144800.v1.1 MD05G1064700.v1.1 MD15G1259000.v1.1
prunus_persica	Prupe.7G156800_v2.0.a1 Prupe.8G094700_v2.0.a1 Prupe.8G094700_v2.0.a1
pyrus_communis	pycom02g11470 pycom05g05560 pycom15g22740
rosa_chinensis	RchiOBHm_Chr2g0101181 RchiOBHm_Chr6g0264961
rosa_laevigata	RLG00000014227 RLG00000017053
rosa_multiflora	Rmu_co8052262.1_g000001 Rmu_sc0002934.1_g000038 Rmu_sc0006314.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432060 Rroxscaffold_2G00141520 Rroxscaffold_7G00203130
rosa_rugosa	Rorug02G0100400 Rorug02G0100500 Rorug06G0014100
rosa_samantha	Rh2AG144200 Rh2BG149200 Rh2CG150500 Rh2DG149700 Rh6AG135300 Rh6BG132700 Rh6CG131400 Rh6DG118400
rosa_wichuraiana	Rw2G011300 Rw6G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	513
AcsI	RAATTY	1 cut(s)	594
AcuI	CTGAAG	1 cut(s)	65
AdeI	CACNNNGTG	1 cut(s)	725
AfaI	GTAC	1 cut(s)	521
AgsI	TTSAA	4 cut(s)	89, 209, 746, 891
AjuI	GAANNNNNNNTTGG	2 cut(s)	599, 631
AluBI	AGCT	4 cut(s)	92, 559, 669, 679
AluI	AGCT	4 cut(s)	92, 559, 669, 679
Alw21I	GWGCWC	2 cut(s)	395, 561
Alw26I	GTCTC	2 cut(s)	160, 339
AlwI	GGATC	1 cut(s)	513
Ama87I	CYCGRG	2 cut(s)	309, 329
AoxI	GGCC	4 cut(s)	54, 94, 225, 306
ApeKI	GCWGC	2 cut(s)	290, 679
ApoI	RAATTY	1 cut(s)	594
AspA2I	CCTAGG	1 cut(s)	97
AspS9I	GGNCC	3 cut(s)	40, 55, 307
AsuC2I	CCSGG	2 cut(s)	310, 311
AsuHPI	GGTGA	2 cut(s)	623, 737
AsuII	TTCGAA	1 cut(s)	301
AvaI	CYCGRG	2 cut(s)	309, 329
AvaII	GGWCC	1 cut(s)	40
AvrII	CCTAGG	1 cut(s)	97
BaeI	ACNNNNGTAYC	2 cut(s)	511, 544
BanII	GRGCYC	1 cut(s)	561
Bbv12I	GWGCWC	2 cut(s)	395, 561
BbvI	GCAGC	2 cut(s)	277, 666
BccI	CCATC	3 cut(s)	198, 562, 646
BclI	TGATCA	2 cut(s)	340, 493
BcnI	CCSGG	2 cut(s)	310, 311
BcoDI	GTCTC	2 cut(s)	160, 339
BfaI	CTAG	2 cut(s)	98, 408
BfmI	CTRYAG	1 cut(s)	523
BisI	GCNGC	2 cut(s)	291, 680
BlnI	CCTAGG	1 cut(s)	97
BlpI	GCTNAGC	1 cut(s)	807
BlsI	GCNGC	2 cut(s)	292, 681
Bme1390I	CCNGG	2 cut(s)	310, 311
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	2 cut(s)	309, 329
BmgT120I	GGNCC	3 cut(s)	40, 55, 307
BmrFI	CCNGG	2 cut(s)	310, 311
BmsI	GCATC	2 cut(s)	691, 804
BplI	GAGNNNNNCTC	4 cut(s)	93, 125, 119, 151
Bpu10I	CCTNAGC	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	807
Bpu14I	TTCGAA	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	494
BpuMI	CCSGG	2 cut(s)	310, 311
BsaJI	CCNNGG	2 cut(s)	97, 309
Bse1I	ACTGG	1 cut(s)	466
BseDI	CCNNGG	2 cut(s)	97, 309
BseGI	GGATG	1 cut(s)	417
BseMII	CTCAG	3 cut(s)	152, 171, 540
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	4 cut(s)	529, 566, 569, 679
BseXI	GCAGC	2 cut(s)	277, 666
BsgI	GTGCAG	2 cut(s)	549, 782
BshFI	GGCC	4 cut(s)	56, 96, 227, 308
BsiHKAI	GWGCWC	2 cut(s)	395, 561
BsiHKCI	CYCGRG	2 cut(s)	309, 329
BsiSI	CCGG	1 cut(s)	310
BslFI	GGGAC	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	160, 339
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	4 cut(s)	56, 96, 227, 308
BsoBI	CYCGRG	2 cut(s)	309, 329
Bsp119I	TTCGAA	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	395, 561
Bsp143I	GATC	3 cut(s)	340, 493, 505
Bsp1720I	GCTNAGC	1 cut(s)	807
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	4 cut(s)	56, 96, 227, 308
BspCNI	CTCAG	3 cut(s)	151, 170, 541
BspHI	TCATGA	1 cut(s)	148
BspPI	GGATC	1 cut(s)	513
BspT104I	TTCGAA	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	2 cut(s)	97, 309
BssMI	GATC	3 cut(s)	340, 493, 505
BssT1I	CCWWGG	1 cut(s)	97
Bst4CI	ACNGT	3 cut(s)	242, 397, 527
Bst6I	CTCTTC	3 cut(s)	174, 216, 741
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	3 cut(s)	94, 431, 897
BstDEI	CTNAG	7 cut(s)	138, 157, 254, 263, 549, 675, 807
BstF5I	GGATG	1 cut(s)	417
BstKTI	GATC	3 cut(s)	343, 496, 508
BstMAI	GTCTC	2 cut(s)	160, 339
BstMBI	GATC	3 cut(s)	340, 493, 505
BstSCI	CCNGG	2 cut(s)	308, 309
BstSFI	CTRYAG	1 cut(s)	523
BstV1I	GCAGC	2 cut(s)	277, 666
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuRI	GGCC	4 cut(s)	56, 96, 227, 308
BtsCI	GGATG	1 cut(s)	417
BtsI	GCAGTG	2 cut(s)	537, 654
BtsIMutI	CAGTG	5 cut(s)	393, 532, 537, 654, 784
Cac8I	GCNNGC	3 cut(s)	94, 431, 897
CciI	TCATGA	1 cut(s)	148
Cfr13I	GGNCC	3 cut(s)	40, 55, 307
Cfr9I	CCCGGG	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	4 cut(s)	67, 149, 641, 700
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	7 cut(s)	138, 157, 254, 263, 549, 675, 807
DpnI	GATC	3 cut(s)	342, 495, 507
DpnII	GATC	3 cut(s)	340, 493, 505
DraIII	CACNNNGTG	1 cut(s)	725
Eam1104I	CTCTTC	3 cut(s)	174, 216, 741
EarI	CTCTTC	3 cut(s)	174, 216, 741
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	65
Eco88I	CYCGRG	2 cut(s)	309, 329
EcoICRI	GAGCTC	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	4 cut(s)	70, 152, 644, 703
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	4 cut(s)	66, 148, 640, 699
FbaI	TGATCA	2 cut(s)	340, 493
Fnu4HI	GCNGC	2 cut(s)	291, 680
FokI	GGATG	1 cut(s)	424
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	2 cut(s)	291, 680
FspBI	CTAG	2 cut(s)	98, 408
GluI	GCNGC	2 cut(s)	291, 680
HaeIII	GGCC	4 cut(s)	56, 96, 227, 308
HapII	CCGG	1 cut(s)	310
Hin1II	CATG	4 cut(s)	70, 152, 644, 703
HinfI	GANTC	4 cut(s)	250, 278, 332, 435
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	2 cut(s)	623, 737
Hpy166II	GTNNAC	3 cut(s)	40, 400, 728
Hpy188I	TCNGA	3 cut(s)	283, 493, 663
Hpy188III	TCNNGA	5 cut(s)	149, 338, 511, 695, 903
Hpy8I	GTNNAC	3 cut(s)	40, 400, 728
HpyAV	CCTTC	5 cut(s)	55, 215, 380, 580, 601
HpyCH4III	ACNGT	3 cut(s)	242, 397, 527
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	4 cut(s)	530, 682, 799, 817
HpyF3I	CTNAG	7 cut(s)	138, 157, 254, 263, 549, 675, 807
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	70, 152, 644, 703
Ksp22I	TGATCA	2 cut(s)	340, 493
Kzo9I	GATC	3 cut(s)	340, 493, 505
LmnI	GCTCC	3 cut(s)	390, 556, 666
Lsp1109I	GCAGC	2 cut(s)	277, 666
LweI	GCATC	2 cut(s)	691, 804
MaeI	CTAG	2 cut(s)	98, 408
MaeII	ACGT	1 cut(s)	84
MalI	GATC	3 cut(s)	342, 495, 507
MboI	GATC	3 cut(s)	340, 493, 505
MboII	GAAGA	7 cut(s)	58, 191, 233, 493, 758, 832, 835
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	2 cut(s)	395, 561
MluCI	AATT	6 cut(s)	31, 349, 365, 594, 621, 885
MlyI	GAGTC	3 cut(s)	287, 341, 444
MmeI	TCCRAC	1 cut(s)	597
MseI	TTAA	5 cut(s)	29, 318, 443, 591, 884
MslI	CAYNNNNRTG	1 cut(s)	704
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	2 cut(s)	310, 311
NciI	CCSGG	2 cut(s)	310, 311
NdeII	GATC	3 cut(s)	340, 493, 505
NlaIII	CATG	4 cut(s)	70, 152, 644, 703
NspV	TTCGAA	1 cut(s)	301
PaeR7I	CTCGAG	1 cut(s)	329
PagI	TCATGA	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	292, 681
PleI	GAGTC	3 cut(s)	286, 340, 443
PpsI	GAGTC	3 cut(s)	286, 340, 443
Psp124BI	GAGCTC	1 cut(s)	561
PspPI	GGNCC	3 cut(s)	40, 55, 307
PspXI	VCTCGAGB	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
RseI	CAYNNNNRTG	1 cut(s)	704
SacI	GAGCTC	1 cut(s)	561
SaqAI	TTAA	5 cut(s)	29, 318, 443, 591, 884
SatI	GCNGC	2 cut(s)	291, 680
Sau3AI	GATC	3 cut(s)	340, 493, 505
Sau96I	GGNCC	3 cut(s)	40, 55, 307
SchI	GAGTC	3 cut(s)	287, 341, 444
ScrFI	CCNGG	2 cut(s)	310, 311
SduI	GDGCHC	2 cut(s)	395, 561
SfaNI	GCATC	2 cut(s)	691, 804
SfcI	CTRYAG	1 cut(s)	523
Sfr274I	CTCGAG	1 cut(s)	329
SfuI	TTCGAA	1 cut(s)	301
SinI	GGWCC	1 cut(s)	40
SlaI	CTCGAG	1 cut(s)	329
SmaI	CCCGGG	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	2 cut(s)	329, 509
SmoI	CTYRAG	2 cut(s)	329, 509
Sse9I	AATT	6 cut(s)	31, 349, 365, 594, 621, 885
SsiI	CCGC	1 cut(s)	293
SspI	AATATT	1 cut(s)	742
SspMI	CTAG	2 cut(s)	98, 408
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	2 cut(s)	308, 309
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	3 cut(s)	242, 397, 527
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	5 cut(s)	171, 301, 330, 561, 600
TasI	AATT	6 cut(s)	31, 349, 365, 594, 621, 885
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	5 cut(s)	29, 318, 443, 591, 884
Tru9I	TTAA	5 cut(s)	29, 318, 443, 591, 884
TscAI	CASTG	5 cut(s)	400, 532, 537, 654, 784
TseI	GCWGC	2 cut(s)	290, 679
TspDTI	ATGAA	4 cut(s)	17, 137, 165, 234
TspMI	CCCGGG	1 cut(s)	309
TspRI	CASTG	5 cut(s)	400, 532, 537, 654, 784
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	594
XhoI	CTCGAG	1 cut(s)	329
XmaI	CCCGGG	1 cut(s)	309
XmaJI	CCTAGG	1 cut(s)	97
XspI	CTAG	2 cut(s)	98, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.