Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003203

Physical Location & Seq

Genomic Coordinates Forward (+)

12741266 .. 12743988

Gene Structure 2723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G094700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAATGATCTAATGACCAAGTCATTCCTCAGTTACGTGGACCTCAAGAAACAGGCCATGAAAGACCTTGAATCGGAACCCGACCTCGAAATGGGCAAACTTGGCCCTGCTGATGAACAGAACCTTACCCAATTTTTCGAACAAGTGACCGCAATCAAGGCTGATATGGAAGAGATTACAAACCTTCTTCTTGATCTTCAGGACCTGAATGAAGAAACCAAGTCTACTCACAGTGCTAAAGTTCTTAGAGGGTTAAGAGATAGAATTAATGCTGACATGGTAGCTATTCTGAGGAAAGCAAAAGGCATCAAAGCAAGATTGGAGTCGCTTGACCGCTCGAATGTGGCTAATCGAAATGTATCAGTGGAGTACAAGGAAGGTAGCCCTGTTGATCGAATGAGGATTTCGGTGACTAATGGTTTGAGAGCTAAGCTGAGAGATATGACGAATGATTTTCAGTCCTTGAGAGAACAGATTGTTAAAGAGCACAAAGAAGGTCTCAAGAGGAGGTATTATAATGCCACTGGGGAGGAAGCAAGTGAGGAAGTGATTGATAAGATGATTTTGGAAAGTGGGCAGATCAAAGTTTTTGAGGGGAAGGCTGAGCTGGCAATGGAGAATCAGCAGAGGCATGAGGCCTTGAAGGACTTGCAGAGAAGCTTGACAGAACTCCATCAAGTTTTCCTGGACATGGCAATGATGGTTGAAAAGCAAGGGGAACAAATGGATGATATTGAACAGAATGTGGCTGATGCTGGAGCTTACATTCATGGTGGAACCAATGCTCTTTTTTCTGCTAAGCAGATGAAGCAGAGAAGAAGAAGATGGGTTTGTTGGATTGGGGCTTTGGTGTTGCTTGTGTTGCTGGTTGAAGTTCCCAGTTCCACTACCGACAACAAAGAAATTATAACCATGAAGGTGAAGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

310

Amino Acids

35.22

Weight (kDa)

5.74

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18260 AT2G18260
fragaria_vesca	FvH4_1g13020 FvH4_2g09080 FvH4_2g09080
malus_domestica	MD02G1144800.v1.1 MD05G1064700.v1.1 MD15G1259000.v1.1
prunus_persica	Prupe.7G156800_v2.0.a1 Prupe.8G094700_v2.0.a1 Prupe.8G094700_v2.0.a1
pyrus_communis	pycom02g11470 pycom05g05560 pycom15g22740
rosa_chinensis	RchiOBHm_Chr2g0101181 RchiOBHm_Chr6g0264961
rosa_laevigata	RLG00000014227 RLG00000017053
rosa_multiflora	Rmu_co8052262.1_g000001 Rmu_sc0002934.1_g000038 Rmu_sc0006314.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432060 Rroxscaffold_2G00141520 Rroxscaffold_7G00203130
rosa_rugosa	Rorug02G0100400 Rorug02G0100500 Rorug06G0014100
rosa_samantha	Rh2AG144200 Rh2BG149200 Rh2CG150500 Rh2DG149700 Rh6AG135300 Rh6BG132700 Rh6CG131400 Rh6DG118400
rosa_wichuraiana	Rw2G011300 Rw6G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	516, 908
AccBSI	CCGCTC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	224
AciI	CCGC	2 cut(s)	150, 334
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	3 cut(s)	73, 91, 691
AgsI	TTSAA	5 cut(s)	71, 643, 707, 737, 872
AjnI	CCWGG	1 cut(s)	684
AluBI	AGCT	6 cut(s)	284, 428, 433, 607, 660, 761
AluI	AGCT	6 cut(s)	284, 428, 433, 607, 660, 761
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	1 cut(s)	503
AlwNI	CAGNNNCTG	1 cut(s)	205
AoxI	GGCC	3 cut(s)	54, 103, 636
ArsI	GACNNNNNNTTYG	2 cut(s)	403, 435
AseI	ATTAAT	1 cut(s)	267
AspS9I	GGNCC	3 cut(s)	40, 104, 202
AsuHPI	GGTGA	1 cut(s)	421
AsuII	TTCGAA	1 cut(s)	138
AvaII	GGWCC	2 cut(s)	40, 202
Bbv12I	GWGCWC	1 cut(s)	489
BccI	CCATC	3 cut(s)	681, 694, 819
BciT130I	CCWGG	1 cut(s)	686
BcoDI	GTCTC	1 cut(s)	503
BlpI	GCTNAGC	3 cut(s)	429, 603, 798
Bme1390I	CCNGG	1 cut(s)	686
Bme18I	GGWCC	2 cut(s)	40, 202
BmgT120I	GGNCC	3 cut(s)	40, 104, 202
BmiI	GGNNCC	2 cut(s)	78, 778
BmrFI	CCNGG	1 cut(s)	686
BmrI	ACTGGG	2 cut(s)	534, 873
BmsI	GCATC	2 cut(s)	315, 742
BmuI	ACTGGG	2 cut(s)	534, 873
BpmI	CTGGAG	1 cut(s)	777
Bpu1102I	GCTNAGC	3 cut(s)	429, 603, 798
Bpu14I	TTCGAA	1 cut(s)	138
BpuEI	CTTGAG	3 cut(s)	29, 484, 485
BsaAI	YACGTR	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 91, 691
Bse1I	ACTGG	2 cut(s)	529, 879
Bse3DI	GCAATG	2 cut(s)	618, 702
BseBI	CCWGG	1 cut(s)	686
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	3 cut(s)	73, 91, 691
BseMI	GCAATG	2 cut(s)	618, 702
BseMII	CTCAG	4 cut(s)	43, 281, 425, 594
BseNI	ACTGG	2 cut(s)	529, 879
BseRI	GAGGAG	1 cut(s)	520
BshFI	GGCC	3 cut(s)	56, 105, 638
BsiHKAI	GWGCWC	1 cut(s)	489
BslI	CCNNNNNNNGG	3 cut(s)	73, 91, 691
BsmAI	GTCTC	1 cut(s)	503
BsnI	GGCC	3 cut(s)	56, 105, 638
Bso31I	GGTCTC	1 cut(s)	503
Bsp119I	TTCGAA	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	4 cut(s)	7, 193, 391, 579
Bsp1720I	GCTNAGC	3 cut(s)	429, 603, 798
BspACI	CCGC	2 cut(s)	150, 334
BspANI	GGCC	3 cut(s)	56, 105, 638
BspCNI	CTCAG	4 cut(s)	42, 282, 426, 595
BspLI	GGNNCC	2 cut(s)	78, 778
BspT104I	TTCGAA	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	503
BsrBI	CCGCTC	1 cut(s)	336
BsrDI	GCAATG	2 cut(s)	618, 702
BsrI	ACTGG	2 cut(s)	529, 879
BssMI	GATC	4 cut(s)	7, 193, 391, 579
Bst2UI	CCWGG	1 cut(s)	686
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	37
BstBI	TTCGAA	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	7 cut(s)	29, 245, 290, 429, 434, 603, 798
BstF5I	GGATG	1 cut(s)	733
BstKTI	GATC	4 cut(s)	10, 196, 394, 582
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	4 cut(s)	7, 193, 391, 579
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 158, 608, 808, 862
BstNI	CCWGG	1 cut(s)	686
BstSCI	CCNGG	1 cut(s)	684
BsuRI	GGCC	3 cut(s)	56, 105, 638
BtsCI	GGATG	1 cut(s)	733
BtsIMutI	CAGTG	3 cut(s)	238, 369, 522
Cac8I	GCNNGC	1 cut(s)	609
CaiI	CAGNNNCTG	1 cut(s)	205
Cfr13I	GGNCC	3 cut(s)	40, 104, 202
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	6 cut(s)	58, 277, 632, 691, 770, 913
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	7 cut(s)	29, 245, 290, 429, 434, 603, 798
DpnI	GATC	4 cut(s)	9, 195, 393, 581
DpnII	GATC	4 cut(s)	7, 193, 391, 579
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco147I	AGGCCT	1 cut(s)	638
Eco31I	GGTCTC	1 cut(s)	503
Eco47I	GGWCC	2 cut(s)	40, 202
Eco57I	CTGAAG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	684
FaeI	CATG	6 cut(s)	61, 280, 635, 694, 773, 916
FatI	CATG	6 cut(s)	57, 276, 631, 690, 769, 912
FblI	GTMKAC	1 cut(s)	224
FokI	GGATG	1 cut(s)	740
GsuI	CTGGAG	1 cut(s)	777
HaeIII	GGCC	3 cut(s)	56, 105, 638
Hin1II	CATG	6 cut(s)	61, 280, 635, 694, 773, 916
HindIII	AAGCTT	1 cut(s)	658
HinfI	GANTC	3 cut(s)	71, 323, 619
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	2 cut(s)	40, 225
Hpy188I	TCNGA	2 cut(s)	76, 291
Hpy188III	TCNNGA	4 cut(s)	46, 191, 200, 502
Hpy8I	GTNNAC	2 cut(s)	40, 225
HpyAV	CCTTC	7 cut(s)	194, 371, 488, 592, 637, 910, 916
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	652
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 158, 608, 808, 862
HpyF3I	CTNAG	7 cut(s)	29, 245, 290, 429, 434, 603, 798
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	6 cut(s)	61, 280, 635, 694, 773, 916
Kzo9I	GATC	4 cut(s)	7, 193, 391, 579
LmnI	GCTCC	1 cut(s)	758
LweI	GCATC	2 cut(s)	315, 742
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	3 cut(s)	32, 145, 409
MalI	GATC	4 cut(s)	9, 195, 393, 581
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	4 cut(s)	7, 193, 391, 579
MboII	GAAGA	7 cut(s)	179, 182, 188, 224, 828, 831, 834
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	3 cut(s)	131, 264, 903
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	815
MseI	TTAA	3 cut(s)	254, 267, 480
MslI	CAYNNNNRTG	2 cut(s)	695, 917
MspR9I	CCNGG	1 cut(s)	686
MvaI	CCWGG	1 cut(s)	686
MwoI	GCNNNNNNNGC	5 cut(s)	102, 158, 608, 808, 862
NdeII	GATC	4 cut(s)	7, 193, 391, 579
NlaIII	CATG	6 cut(s)	61, 280, 635, 694, 773, 916
NlaIV	GGNNCC	2 cut(s)	78, 778
NmuCI	GTSAC	2 cut(s)	145, 409
NspV	TTCGAA	1 cut(s)	138
PceI	AGGCCT	1 cut(s)	638
PfeI	GAWTC	2 cut(s)	71, 619
PflFI	GACNNNGTC	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	684
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Ppu21I	YACGTR	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	202
PshBI	ATTAAT	1 cut(s)	267
PsiI	TTATAA	2 cut(s)	516, 908
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	684
PspGI	CCWGG	1 cut(s)	684
PspN4I	GGNNCC	2 cut(s)	78, 778
PspPI	GGNCC	3 cut(s)	40, 104, 202
PspPPI	RGGWCCY	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	205
PsyI	GACNNNGTC	1 cut(s)	19
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	2 cut(s)	695, 917
SaqAI	TTAA	3 cut(s)	254, 267, 480
Sau3AI	GATC	4 cut(s)	7, 193, 391, 579
Sau96I	GGNCC	3 cut(s)	40, 104, 202
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	686
SduI	GDGCHC	1 cut(s)	489
SfaNI	GCATC	2 cut(s)	315, 742
SfuI	TTCGAA	1 cut(s)	138
SinI	GGWCC	2 cut(s)	40, 202
SmiMI	CAYNNNNRTG	2 cut(s)	695, 917
SmlI	CTYRAG	3 cut(s)	44, 463, 500
SmoI	CTYRAG	3 cut(s)	44, 463, 500
Sse9I	AATT	3 cut(s)	131, 264, 903
SseBI	AGGCCT	1 cut(s)	638
SsiI	CCGC	2 cut(s)	150, 334
StuI	AGGCCT	1 cut(s)	638
StyD4I	CCNGG	1 cut(s)	684
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	5 cut(s)	87, 138, 338, 352, 394
TasI	AATT	3 cut(s)	131, 264, 903
TatI	WGTACW	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	71, 619
Tru1I	TTAA	3 cut(s)	254, 267, 480
Tru9I	TTAA	3 cut(s)	254, 267, 480
TscAI	CASTG	3 cut(s)	238, 369, 529
TseFI	GTSAC	2 cut(s)	145, 409
Tsp45I	GTSAC	2 cut(s)	145, 409
TspDTI	ATGAA	7 cut(s)	17, 74, 129, 225, 758, 821, 929
TspRI	CASTG	3 cut(s)	238, 369, 529
Tth111I	GACNNNGTC	1 cut(s)	19
VpaK11BI	GGWCC	2 cut(s)	40, 202
VspI	ATTAAT	1 cut(s)	267
XmiI	GTMKAC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.