Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000175

Orthogroup ID

OG0003203

Physical Location & Seq

Genomic Coordinates Reverse (-)

338329 .. 340048

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_175G00432060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAAGAGATTACGAACCTGCTTCTTGATCTTCAGGACCTGAATGAAGAAACCAAGTCCACTCACAGTGCTAAAGTTCTTAGGGGGCTGAGAGACAGAATCAATGCTGACATGGTCAGTATTCTGAGGAAAGCTAAGAACATTAAAGCAAGATTGGAATCGCTTGATCAGTCTAATATTGCTAACCGAGAGGTGGTTGGGTACAAGGAAGGAAGTCCTGTTGATCGAATGAGGATTTCAGTGACTGGGGGACTGAGAGTCAAGCTGAGAGATATGATGAATGATTTTCTGGCATTGAGAGAACAGATTGTTAAGGAGCACAAAGACGGTCTCAAGAGAAGGTACTATAATGCCACCGGAGAGGAAGCAACTGAAGAAGTGATTGAGAAGATTTTGAGAAGTGGGGAGGTCAAAGTTTTTGAAGGGAAAACAGAGCTGGTGATGGAGAATCAGGAAAGAGATGAGGCCTTGAAGGACTTAAAGAGAAGCTTGACAGAACTGCATCAAGTTTTCCTGGACATGGCGGTGTTGGTTGAAGCACAAGGTGAACAGATTAATGATATCGAAAAGAATGTGGCGGATGCTGGGATTTACATAAGTGGTGGAAACAAGGAACTTCTTCATGCCAAGCAGTTGAAAAAGAAAAGAGGAAAGTGGGTTTGTTGGATTATGGCTTTCGTGCTGGTGGTGTTATTGGTGTGCTTTATTTCCATCATAGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

241

Amino Acids

27.47

Weight (kDa)

6.93

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	1 - 141	1.7e-38	Syntaxin
SNARE	PF05739	183 - 233	1.5e-10	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18260 AT2G18260
fragaria_vesca	FvH4_1g13020 FvH4_2g09080 FvH4_2g09080
malus_domestica	MD02G1144800.v1.1 MD05G1064700.v1.1 MD15G1259000.v1.1
prunus_persica	Prupe.7G156800_v2.0.a1 Prupe.8G094700_v2.0.a1 Prupe.8G094700_v2.0.a1
pyrus_communis	pycom02g11470 pycom05g05560 pycom15g22740
rosa_chinensis	RchiOBHm_Chr2g0101181 RchiOBHm_Chr6g0264961
rosa_laevigata	RLG00000014227 RLG00000017053
rosa_multiflora	Rmu_co8052262.1_g000001 Rmu_sc0002934.1_g000038 Rmu_sc0006314.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432060 Rroxscaffold_2G00141520 Rroxscaffold_7G00203130
rosa_rugosa	Rorug02G0100400 Rorug02G0100500 Rorug06G0014100
rosa_samantha	Rh2AG144200 Rh2BG149200 Rh2CG150500 Rh2DG149700 Rh6AG135300 Rh6BG132700 Rh6CG131400 Rh6DG118400
rosa_wichuraiana	Rw2G011300 Rw6G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	27
AciI	CCGC	2 cut(s)	524, 578
AcuI	CTGAAG	2 cut(s)	17, 393
AdeI	CACNNNGTG	1 cut(s)	545
AfaI	GTAC	2 cut(s)	203, 344
AfiI	CCNNNNNNNGG	2 cut(s)	193, 520
AgsI	TTSAA	4 cut(s)	422, 472, 536, 637
AhdI	GACNNNNNGTC	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	5 cut(s)	134, 265, 436, 489, 719
AluI	AGCT	5 cut(s)	134, 265, 436, 489, 719
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	2 cut(s)	87, 335
AlwNI	CAGNNNCTG	2 cut(s)	40, 245
AoxI	GGCC	1 cut(s)	465
AseI	ATTAAT	1 cut(s)	555
Asp700I	GAANNNNTTC	1 cut(s)	618
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	451, 557
AvaII	GGWCC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	321
BccI	CCATC	2 cut(s)	436, 719
BciT130I	CCWGG	1 cut(s)	515
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	87, 335
BfuAI	ACCTGC	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	37
BmeRI	GACNNNNNGTC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	515
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	511, 571
BmuI	ACTGGG	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	335
BsaWI	WCCGGW	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 520
Bse1I	ACTGG	1 cut(s)	250
Bse8I	GATNNNNATC	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	515
BseGI	GGATG	1 cut(s)	586
BseJI	GATNNNNATC	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	193, 520
BseMII	CTCAG	4 cut(s)	80, 116, 245, 257
BseNI	ACTGG	1 cut(s)	250
BseYI	CCCAGC	1 cut(s)	584
BshFI	GGCC	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	193, 520
BsmAI	GTCTC	2 cut(s)	87, 335
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	1 cut(s)	467
Bso31I	GGTCTC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	28, 166, 223
BspACI	CCGC	2 cut(s)	524, 578
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	4 cut(s)	81, 117, 246, 258
BspMI	ACCTGC	1 cut(s)	27
BspTNI	GGTCTC	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	250
BssMI	GATC	3 cut(s)	28, 166, 223
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	68, 329
BstDEI	CTNAG	6 cut(s)	80, 89, 125, 135, 254, 266
BstF5I	GGATG	1 cut(s)	586
BstKTI	GATC	3 cut(s)	31, 169, 226
BstMAI	GTCTC	2 cut(s)	87, 335
BstMBI	GATC	3 cut(s)	28, 166, 223
BstNI	CCWGG	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	467
BtsCI	GGATG	1 cut(s)	586
BtsIMutI	CAGTG	2 cut(s)	73, 246
BveI	ACCTGC	1 cut(s)	27
CaiI	CAGNNNCTG	2 cut(s)	40, 245
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	202, 343
CviAII	CATG	3 cut(s)	112, 520, 623
CviJI	RGCY	8 cut(s)	88, 134, 265, 436, 467, 489, 674, 719
CviKI_1	RGCY	8 cut(s)	88, 134, 265, 436, 467, 489, 674, 719
CviQI	GTAC	2 cut(s)	202, 343
DdeI	CTNAG	6 cut(s)	80, 89, 125, 135, 254, 266
DpnI	GATC	3 cut(s)	30, 168, 225
DpnII	GATC	3 cut(s)	28, 166, 223
DraIII	CACNNNGTG	1 cut(s)	545
DriI	GACNNNNNGTC	1 cut(s)	257
Eam1105I	GACNNNNNGTC	1 cut(s)	257
EciI	GGCGGA	1 cut(s)	593
Eco147I	AGGCCT	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	335
Eco32I	GATATC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	17, 393
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	513
EcoRV	GATATC	1 cut(s)	562
FaeI	CATG	3 cut(s)	115, 523, 626
FaiI	YATR	8 cut(s)	113, 275, 348, 521, 596, 624, 671, 716
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	3 cut(s)	111, 519, 622
FbaI	TGATCA	1 cut(s)	166
FokI	GGATG	1 cut(s)	593
GsaI	CCCAGC	1 cut(s)	588
HaeIII	GGCC	1 cut(s)	467
HapII	CCGG	1 cut(s)	357
Hin1II	CATG	3 cut(s)	115, 523, 626
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	4 cut(s)	99, 158, 258, 448
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	2 cut(s)	451, 557
Hpy166II	GTNNAC	2 cut(s)	60, 548
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	5 cut(s)	26, 35, 334, 452, 723
Hpy8I	GTNNAC	2 cut(s)	60, 548
HpyAV	CCTTC	4 cut(s)	203, 333, 416, 466
HpyCH4III	ACNGT	2 cut(s)	68, 329
HpyCH4V	TGCA	1 cut(s)	502
HpyF3I	CTNAG	6 cut(s)	80, 89, 125, 135, 254, 266
Hsp92II	CATG	3 cut(s)	115, 523, 626
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	28, 166, 223
LmnI	GCTCC	1 cut(s)	316
LweI	GCATC	2 cut(s)	511, 571
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	3 cut(s)	30, 168, 225
MboI	GATC	3 cut(s)	28, 166, 223
MboII	GAAGA	6 cut(s)	17, 23, 59, 386, 400, 611
MhlI	GDGCHC	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	644
MnlI	CCTC	7 cut(s)	120, 184, 225, 355, 400, 457, 641
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	4 cut(s)	144, 312, 479, 555
MslI	CAYNNNNRTG	1 cut(s)	524
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	515
NdeII	GATC	3 cut(s)	28, 166, 223
NlaIII	CATG	3 cut(s)	115, 523, 626
NmuCI	GTSAC	1 cut(s)	241
PceI	AGGCCT	1 cut(s)	467
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	3 cut(s)	99, 158, 448
PflFI	GACNNNGTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	513
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PpuMI	RGGWCCY	1 cut(s)	37
PshBI	ATTAAT	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	513
PspFI	CCCAGC	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	513
PspPI	GGNCC	1 cut(s)	37
PspPPI	RGGWCCY	1 cut(s)	37
PstNI	CAGNNNCTG	2 cut(s)	40, 245
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	2 cut(s)	203, 344
RsaNI	GTAC	2 cut(s)	202, 343
RseI	CAYNNNNRTG	1 cut(s)	524
SaqAI	TTAA	4 cut(s)	144, 312, 479, 555
Sau3AI	GATC	3 cut(s)	28, 166, 223
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	515
SduI	GDGCHC	1 cut(s)	321
SfaNI	GCATC	2 cut(s)	511, 571
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SseBI	AGGCCT	1 cut(s)	467
SsiI	CCGC	2 cut(s)	524, 578
SspI	AATATT	1 cut(s)	178
StuI	AGGCCT	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	68, 329
TaqI	TCGA	2 cut(s)	226, 564
TfiI	GAWTC	3 cut(s)	99, 158, 448
Tru1I	TTAA	4 cut(s)	144, 312, 479, 555
Tru9I	TTAA	4 cut(s)	144, 312, 479, 555
TscAI	CASTG	2 cut(s)	73, 246
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	3 cut(s)	60, 293, 611
TspRI	CASTG	2 cut(s)	73, 246
Tth111I	GACNNNGTC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	555
XmnI	GAANNNNTTC	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.