Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003203

Physical Location & Seq

Genomic Coordinates Reverse (-)

7989748 .. 7991686

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAATGATCTGATGACCAAATCGTTCACCAGTTACGTGGACCTTAAGAAACAGGCCATGAAAGACATTGAAGCAGAACCTGACTTGGAGATGGGGCAACTTGAGCCTGCTGAAGAACAGAATCTTGCAAATTTTTTTGAAGAAGTGACAGCAATCAAGGCTGACATGGAAGAGATTTCGAACCTGCTTCTTGATCTTCAGGATCTGAATGAAGAAACCAAGTCCACACACAGTGCTAAAGTTCTTCGGGGGCTGAGAGACAGAATCAATGCTGACATGGTTAGTATCCTGAGGAAAGCGAAGAACATCAAAGCAAGGTTGGAATCGCTTGATCAGTCTAACATTGCTAACCGAGAGGTGGCTGGGTACAAGGAAGGAAGCCCTGTTGATAGAATGAGGATTTCGGTGACTAGTGGACTGAGAGTCAAGCTGAGAGATATGATGAATGATTTTCTGGCATTGAGGGAACAGATTGTTAAGGAGCACAAAGAGGGTCTCAAGAGGAGGTACTATAATGCAACCGGAGAGGAAGCAACTGAAGAAGTGATTGAGAAGATTTTGAGAAGCGGGGAGGTCAAAGTTTTTGAAGGGAAAACAGAGCTGGTGATGGAGAATCAGGAAAGAGATGAGGCCTTGAAGGACTTGAAGAGAAGCTTGACAGAACTGCATCAAGTTTTCCTGGACATGGCTGTGTTGGTTGAAGCACAAGGTGAACAGATTAATGATATCGAAAAGAATGTGGCTGATGCTGCAGTTTACATAAGTGGTGGAACCAAGGAACTCCTTCATGCTAAGCAGTTGAAGAAGAAAAGAGGAAAGTGGGTTTGTTGGATTATGGCTTTTGTGCTGTTTGTGTTATTGGTGTGCTTTATTTCCATCATAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

297

Amino Acids

33.74

Weight (kDa)

5.34

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	39 - 196	3.8e-46	Syntaxin
SNARE	PF05739	238 - 288	7e-11	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18260 AT2G18260
fragaria_vesca	FvH4_1g13020 FvH4_2g09080 FvH4_2g09080
malus_domestica	MD02G1144800.v1.1 MD05G1064700.v1.1 MD15G1259000.v1.1
prunus_persica	Prupe.7G156800_v2.0.a1 Prupe.8G094700_v2.0.a1 Prupe.8G094700_v2.0.a1
pyrus_communis	pycom02g11470 pycom05g05560 pycom15g22740
rosa_chinensis	RchiOBHm_Chr2g0101181 RchiOBHm_Chr6g0264961
rosa_laevigata	RLG00000014227 RLG00000017053
rosa_multiflora	Rmu_co8052262.1_g000001 Rmu_sc0002934.1_g000038 Rmu_sc0006314.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432060 Rroxscaffold_2G00141520 Rroxscaffold_7G00203130
rosa_rugosa	Rorug02G0100400 Rorug02G0100500 Rorug06G0014100
rosa_samantha	Rh2AG144200 Rh2BG149200 Rh2CG150500 Rh2DG149700 Rh6AG135300 Rh6BG132700 Rh6CG131400 Rh6DG118400
rosa_wichuraiana	Rw2G011300 Rw6G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	192
AciI	CCGC	1 cut(s)	567
AclWI	GGATC	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	3 cut(s)	132, 182, 558
AdeI	CACNNNGTG	2 cut(s)	233, 710
AfaI	GTAC	2 cut(s)	368, 509
AfiI	CCNNNNNNNGG	2 cut(s)	358, 685
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	7 cut(s)	71, 140, 587, 637, 646, 701, 802
AhdI	GACNNNNNGTC	1 cut(s)	422
AhlI	ACTAGT	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	4 cut(s)	430, 601, 654, 884
AluI	AGCT	4 cut(s)	430, 601, 654, 884
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	2 cut(s)	252, 500
AlwI	GGATC	1 cut(s)	210
AlwNI	CAGNNNCTG	2 cut(s)	80, 205
AoxI	GGCC	2 cut(s)	54, 630
ApeKI	GCWGC	2 cut(s)	749, 884
ApoI	RAATTY	1 cut(s)	130
AseI	ATTAAT	1 cut(s)	720
Asp700I	GAANNNNTTC	1 cut(s)	783
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	4 cut(s)	19, 418, 616, 722
AsuII	TTCGAA	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	40
AxyI	CCTNAGG	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	736, 871
BccI	CCATC	3 cut(s)	85, 601, 884
BciT130I	CCWGG	1 cut(s)	680
BciVI	GTATCC	1 cut(s)	296
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	252, 500
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	750
BfrI	CTTAAG	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	192
BfuI	GTATCC	1 cut(s)	296
BisI	GCNGC	2 cut(s)	750, 885
BlpI	GCTNAGC	1 cut(s)	792
BlsI	GCNGC	2 cut(s)	751, 886
Bme1390I	CCNGG	1 cut(s)	680
Bme18I	GGWCC	1 cut(s)	40
BmeRI	GACNNNNNGTC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	772
BmrFI	CCNGG	1 cut(s)	680
BmsI	GCATC	2 cut(s)	676, 736
Bpu1102I	GCTNAGC	1 cut(s)	792
Bpu14I	TTCGAA	1 cut(s)	179
BpuEI	CTTGAG	2 cut(s)	122, 482
BsaAI	YACGTR	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	774
BsaWI	WCCGGW	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 685
Bse1I	ACTGG	1 cut(s)	30
Bse21I	CCTNAGG	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	680
BseDI	CCNNGG	1 cut(s)	774
BseLI	CCNNNNNNNGG	2 cut(s)	358, 685
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	4 cut(s)	245, 281, 410, 422
BseNI	ACTGG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	517
BseXI	GCAGC	2 cut(s)	736, 871
BseYI	CCCAGC	1 cut(s)	362
BshFI	GGCC	2 cut(s)	56, 632
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	522
BslI	CCNNNNNNNGG	2 cut(s)	358, 685
BsmAI	GTCTC	2 cut(s)	252, 500
BsnI	GGCC	2 cut(s)	56, 632
Bso31I	GGTCTC	1 cut(s)	500
Bsp119I	TTCGAA	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	7, 193, 202, 331
Bsp1720I	GCTNAGC	1 cut(s)	792
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	2 cut(s)	56, 632
BspCNI	CTCAG	4 cut(s)	246, 282, 411, 423
BspLI	GGNNCC	1 cut(s)	772
BspMAI	CTGCAG	1 cut(s)	754
BspMI	ACCTGC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	210
BspT104I	TTCGAA	1 cut(s)	179
BspTI	CTTAAG	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	500
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	774
BssMI	GATC	4 cut(s)	7, 193, 202, 331
BssT1I	CCWWGG	1 cut(s)	774
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	2 cut(s)	165, 641
BstAFI	CTTAAG	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	37
BstBI	TTCGAA	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	5 cut(s)	254, 290, 419, 431, 792
BstKTI	GATC	4 cut(s)	10, 196, 205, 334
BstMAI	GTCTC	2 cut(s)	252, 500
BstMBI	GATC	4 cut(s)	7, 193, 202, 331
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 158, 749
BstNI	CCWGG	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	678
BstSFI	CTRYAG	1 cut(s)	750
BstV1I	GCAGC	2 cut(s)	736, 871
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	202
Bsu36I	CCTNAGG	1 cut(s)	290
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	2 cut(s)	56, 632
BtsIMutI	CAGTG	1 cut(s)	238
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	108
CaiI	CAGNNNCTG	2 cut(s)	80, 205
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	367, 508
CviAII	CATG	5 cut(s)	58, 166, 277, 685, 788
CviQI	GTAC	2 cut(s)	367, 508
DdeI	CTNAG	5 cut(s)	254, 290, 419, 431, 792
DpnI	GATC	4 cut(s)	9, 195, 204, 333
DpnII	GATC	4 cut(s)	7, 193, 202, 331
DraIII	CACNNNGTG	2 cut(s)	233, 710
DriI	GACNNNNNGTC	1 cut(s)	422
Eam1104I	CTCTTC	2 cut(s)	165, 641
Eam1105I	GACNNNNNGTC	1 cut(s)	422
EarI	CTCTTC	2 cut(s)	165, 641
Eco130I	CCWWGG	1 cut(s)	774
Eco147I	AGGCCT	1 cut(s)	632
Eco31I	GGTCTC	1 cut(s)	500
Eco32I	GATATC	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	3 cut(s)	132, 182, 558
Eco81I	CCTNAGG	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	678
EcoRV	GATATC	1 cut(s)	727
EcoT14I	CCWWGG	1 cut(s)	774
ErhI	CCWWGG	1 cut(s)	774
FaeI	CATG	5 cut(s)	61, 169, 280, 688, 791
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FatI	CATG	5 cut(s)	57, 165, 276, 684, 787
FauI	CCCGC	1 cut(s)	560
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	750, 885
Fsp4HI	GCNGC	2 cut(s)	750, 885
FspBI	CTAG	1 cut(s)	411
GluI	GCNGC	2 cut(s)	750, 885
GsaI	CCCAGC	1 cut(s)	366
HaeIII	GGCC	2 cut(s)	56, 632
HapII	CCGG	1 cut(s)	522
Hin1II	CATG	5 cut(s)	61, 169, 280, 688, 791
HindIII	AAGCTT	1 cut(s)	652
HinfI	GANTC	5 cut(s)	121, 264, 323, 423, 613
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	4 cut(s)	19, 418, 616, 722
Hpy166II	GTNNAC	6 cut(s)	27, 40, 225, 416, 713, 757
Hpy188I	TCNGA	2 cut(s)	12, 207
Hpy188III	TCNNGA	5 cut(s)	191, 200, 289, 499, 617
Hpy8I	GTNNAC	6 cut(s)	27, 40, 225, 416, 713, 757
HpyAV	CCTTC	4 cut(s)	368, 581, 631, 794
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	4 cut(s)	128, 518, 667, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 158, 749
HpyF3I	CTNAG	5 cut(s)	254, 290, 419, 431, 792
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	5 cut(s)	61, 169, 280, 688, 791
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	4 cut(s)	7, 193, 202, 331
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	2 cut(s)	736, 871
LweI	GCATC	2 cut(s)	676, 736
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	3 cut(s)	32, 145, 406
MalI	GATC	4 cut(s)	9, 195, 204, 333
MboI	GATC	4 cut(s)	7, 193, 202, 331
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	432
MmeI	TCCRAC	2 cut(s)	300, 809
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	3 cut(s)	45, 477, 720
MslI	CAYNNNNRTG	1 cut(s)	689
MspCI	CTTAAG	1 cut(s)	44
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	3 cut(s)	103, 158, 749
NdeII	GATC	4 cut(s)	7, 193, 202, 331
NlaIII	CATG	5 cut(s)	61, 169, 280, 688, 791
NlaIV	GGNNCC	1 cut(s)	772
NmuCI	GTSAC	2 cut(s)	145, 406
NspV	TTCGAA	1 cut(s)	179
PceI	AGGCCT	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	4 cut(s)	121, 264, 323, 613
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	2 cut(s)	751, 886
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
Ppu21I	YACGTR	1 cut(s)	37
PshBI	ATTAAT	1 cut(s)	720
Psp6I	CCWGG	1 cut(s)	678
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	1 cut(s)	772
PspPI	GGNCC	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	754
PstNI	CAGNNNCTG	2 cut(s)	80, 205
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	2 cut(s)	368, 509
RsaNI	GTAC	2 cut(s)	367, 508
RseI	CAYNNNNRTG	1 cut(s)	689
SaqAI	TTAA	3 cut(s)	45, 477, 720
SatI	GCNGC	2 cut(s)	750, 885
Sau3AI	GATC	4 cut(s)	7, 193, 202, 331
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	2 cut(s)	676, 736
SfcI	CTRYAG	1 cut(s)	750
SfuI	TTCGAA	1 cut(s)	179
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	689
SmlI	CTYRAG	3 cut(s)	44, 101, 497
SmoI	CTYRAG	3 cut(s)	44, 101, 497
SpeI	ACTAGT	1 cut(s)	410
Sse9I	AATT	1 cut(s)	130
SseBI	AGGCCT	1 cut(s)	632
SsiI	CCGC	1 cut(s)	567
SspMI	CTAG	1 cut(s)	411
StuI	AGGCCT	1 cut(s)	632
StyD4I	CCNGG	1 cut(s)	678
StyI	CCWWGG	1 cut(s)	774
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	179, 729
TasI	AATT	1 cut(s)	130
TfiI	GAWTC	4 cut(s)	121, 264, 323, 613
Tru1I	TTAA	3 cut(s)	45, 477, 720
Tru9I	TTAA	3 cut(s)	45, 477, 720
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	2 cut(s)	145, 406
TseI	GCWGC	2 cut(s)	749, 884
Tsp45I	GTSAC	2 cut(s)	145, 406
TspDTI	ATGAA	5 cut(s)	17, 74, 225, 458, 776
TspRI	CASTG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	40
VspI	ATTAAT	1 cut(s)	720
XapI	RAATTY	1 cut(s)	130
XmnI	GAANNNNTTC	1 cut(s)	783
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.