AT2G18840

Integral membrane Yip1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006639
Physical Location & Seq
Forward (+)
8158106 .. 8160091
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18840.1

Sequence Viewer

Length: 846 bp
ATGTCACAAGGCGATACAGTACCGCTTCATCCATCGTCTCAATCAGACATTGACGAGATCGAGAATCTGATTAACGAAAGCGTCCAATCAGGTCCCGGAACCGTTCTCGCCGCTCGTCCACCGAGCCCAACCAGACCTTCGATTCCAGTATCTTCTTCTTCTTCTTCTTCTCCGTTTATGCAATCGAATCTTCCACCGCTTCATCCGTCGTCATCAGCTCAGAAAGTGACACATGTCCCCGTTCCTCCGCCTCTTCCGGCGGTAAGTAACTCCAGCAATTTCCAAGGAGCGAGTGCTTTTGGATCTCCGCCTAATACGTTGACGGAGCCTGTGTGGGATACTGTGAAGCGAGATCTGTCTCGGATCGTGAGTAATTTGAAGCTTGTGGTGTTTCCTAATCCGTATAGGGAAGATCCTGGGAAGGCTCTTAGAGATTGGGATCTTTGGGGTCCGTTTTTCTTCATTGTGTTCTTGGGTCTTACTCTTTCATGGTCAGCTTCCGTCAAGAAGTCCGAGGTATTTGCAGTGGCATTTGCACTATTAGCAGCCGGGGCGGTGATCCTTACACTAAACGTGCTTCTCCTGGGTGGACATATAATCTTCTTCCAAAGCTTGAGCCTTCTAGGTTACTGTTTATTTCCGCTAGACGTTGGAGCCGTGATCTGCATGTTGAAAGACAATGTGATACTGAAGATGGTGGTTGTGTCTGTAACCCTTGCCTGGAGCTCATGGGCTGCTTACCCTTTTATGAGCTCAGCGGTTAACCCAAGAAGAAAAGCACTCGCTCTATACCCCGTCTTCCTCATGTATGTGTCAGTCGGTTTTCTCATCATAGCCATCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

281

Amino Acids

30.25

Weight (kDa)

7.79

Isoelectric Point (pI)

60.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 143 - 275 2.6e-15 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 113
AciI CCGC 9 cut(s) 23, 111, 197, 248, 260, 308, 554, 641, 758
AclWI GGATC 5 cut(s) 310, 371, 407, 447, 553
AcuI CTGAAG 1 cut(s) 710
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 720
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 2 cut(s) 379, 673
AjnI CCWGG 3 cut(s) 415, 582, 719
AjuI GAANNNNNNNTTGG 2 cut(s) 121, 153
AluBI AGCT 6 cut(s) 218, 382, 497, 612, 726, 753
AluI AGCT 6 cut(s) 218, 382, 497, 612, 726, 753
Alw21I GWGCWC 2 cut(s) 728, 755
Alw26I GTCTC 2 cut(s) 42, 363
AlwI GGATC 5 cut(s) 310, 371, 407, 447, 553
ApeKI GCWGC 2 cut(s) 545, 734
AspS9I GGNCC 2 cut(s) 92, 449
AsuC2I CCSGG 2 cut(s) 96, 550
AsuHPI GGTGA 1 cut(s) 568
AvaII GGWCC 2 cut(s) 92, 449
BanII GRGCYC 3 cut(s) 128, 728, 755
BbsI GAAGAC 1 cut(s) 790
Bbv12I GWGCWC 2 cut(s) 728, 755
BbvI GCAGC 2 cut(s) 557, 721
BccI CCATC 3 cut(s) 40, 688, 845
BceAI ACGGC 1 cut(s) 641
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BciT130I CCWGG 3 cut(s) 417, 584, 721
BciVI GTATCC 1 cut(s) 331
BcnI CCSGG 2 cut(s) 96, 550
BcoDI GTCTC 2 cut(s) 42, 363
BfaI CTAG 2 cut(s) 623, 644
BfuI GTATCC 1 cut(s) 331
BglII AGATCT 1 cut(s) 352
BisI GCNGC 3 cut(s) 111, 546, 735
BlpI GCTNAGC 1 cut(s) 754
BlsI GCNGC 3 cut(s) 112, 547, 736
Bme1390I CCNGG 5 cut(s) 96, 417, 550, 584, 721
Bme18I GGWCC 2 cut(s) 92, 449
BmgT120I GGNCC 2 cut(s) 92, 449
BmiI GGNNCC 5 cut(s) 94, 100, 327, 450, 655
BmrFI CCNGG 5 cut(s) 96, 417, 550, 584, 721
BoxI GACNNNNGTC 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 790
BpmI CTGGAG 2 cut(s) 256, 742
Bpu1102I GCTNAGC 1 cut(s) 754
BpuEI CTTGAG 1 cut(s) 634
BpuMI CCSGG 2 cut(s) 96, 550
BsaBI GATNNNNATC 1 cut(s) 438
BsaJI CCNNGG 5 cut(s) 283, 416, 513, 549, 583
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 720
Bse1I ACTGG 1 cut(s) 146
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 3 cut(s) 417, 584, 721
BseDI CCNNGG 5 cut(s) 283, 416, 513, 549, 583
BseGI GGATG 2 cut(s) 28, 202
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 720
BseMII CTCAG 2 cut(s) 233, 768
BseNI ACTGG 1 cut(s) 146
BseXI GCAGC 2 cut(s) 557, 721
BsiHKAI GWGCWC 2 cut(s) 728, 755
BsiSI CCGG 3 cut(s) 96, 257, 549
BslFI GGGAC 2 cut(s) 78, 221
BslI CCNNNNNNNGG 1 cut(s) 720
BsmAI GTCTC 2 cut(s) 42, 363
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 2 cut(s) 78, 221
Bsp1286I GDGCHC 3 cut(s) 128, 728, 755
Bsp143I GATC 8 cut(s) 57, 302, 352, 363, 412, 439, 558, 660
Bsp1720I GCTNAGC 1 cut(s) 754
BspACI CCGC 9 cut(s) 23, 111, 197, 248, 260, 308, 554, 641, 758
BspCNI CTCAG 2 cut(s) 232, 767
BspLI GGNNCC 5 cut(s) 94, 100, 327, 450, 655
BspPI GGATC 5 cut(s) 310, 371, 407, 447, 553
BsrBI CCGCTC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 5 cut(s) 283, 416, 513, 549, 583
BssMI GATC 8 cut(s) 57, 302, 352, 363, 412, 439, 558, 660
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 3 cut(s) 417, 584, 721
Bst4CI ACNGT 4 cut(s) 19, 103, 343, 632
Bst6I CTCTTC 1 cut(s) 258
BstDEI CTNAG 3 cut(s) 219, 428, 754
BstF5I GGATG 2 cut(s) 28, 202
BstKTI GATC 8 cut(s) 60, 305, 355, 366, 415, 442, 561, 663
BstMAI GTCTC 2 cut(s) 42, 363
BstMBI GATC 8 cut(s) 57, 302, 352, 363, 412, 439, 558, 660
BstMWI GCNNNNNNNGC 2 cut(s) 542, 551
BstNI CCWGG 3 cut(s) 417, 584, 721
BstNSI RCATGY 2 cut(s) 236, 670
BstPAI GACNNNNGTC 1 cut(s) 233
BstSCI CCNGG 5 cut(s) 94, 415, 548, 582, 719
BstV1I GCAGC 2 cut(s) 557, 721
BstV2I GAAGAC 1 cut(s) 790
BstX2I RGATCY 4 cut(s) 302, 352, 412, 439
BstYI RGATCY 4 cut(s) 302, 352, 412, 439
BsuI GTATCC 1 cut(s) 331
BtsCI GGATG 2 cut(s) 28, 202
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 1 cut(s) 531
Cfr13I GGNCC 2 cut(s) 92, 449
CseI GACGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 20
CviAII CATG 5 cut(s) 233, 489, 667, 729, 805
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 3 cut(s) 219, 428, 754
DpnI GATC 8 cut(s) 59, 304, 354, 365, 414, 441, 560, 662
DpnII GATC 8 cut(s) 57, 302, 352, 363, 412, 439, 558, 660
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
EciI GGCGGA 2 cut(s) 237, 297
Ecl136II GAGCTC 2 cut(s) 726, 753
Eco130I CCWWGG 1 cut(s) 283
Eco24I GRGCYC 3 cut(s) 128, 728, 755
Eco47I GGWCC 2 cut(s) 92, 449
Eco53kI GAGCTC 2 cut(s) 726, 753
Eco57I CTGAAG 1 cut(s) 710
EcoICRI GAGCTC 2 cut(s) 726, 753
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 3 cut(s) 415, 582, 719
EcoT14I CCWWGG 1 cut(s) 283
EcoT38I GRGCYC 3 cut(s) 128, 728, 755
ErhI CCWWGG 1 cut(s) 283
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 5 cut(s) 236, 492, 670, 732, 808
FaqI GGGAC 2 cut(s) 78, 221
FatI CATG 5 cut(s) 232, 488, 666, 728, 804
Fnu4HI GCNGC 3 cut(s) 111, 546, 735
FokI GGATG 2 cut(s) 15, 189
FriOI GRGCYC 3 cut(s) 128, 728, 755
Fsp4HI GCNGC 3 cut(s) 111, 546, 735
FspBI CTAG 2 cut(s) 623, 644
GluI GCNGC 3 cut(s) 111, 546, 735
GsuI CTGGAG 2 cut(s) 256, 742
HapII CCGG 3 cut(s) 96, 257, 549
HgaI GACGC 1 cut(s) 70
Hin1II CATG 5 cut(s) 236, 492, 670, 732, 808
HincII GTYRAC 2 cut(s) 321, 763
HindII GTYRAC 2 cut(s) 321, 763
HindIII AAGCTT 2 cut(s) 380, 610
HinfI GANTC 3 cut(s) 64, 142, 187
HpaI GTTAAC 1 cut(s) 763
HpaII CCGG 3 cut(s) 96, 257, 549
HphI GGTGA 1 cut(s) 568
Hpy166II GTNNAC 4 cut(s) 119, 321, 590, 763
Hpy188I TCNGA 5 cut(s) 46, 69, 222, 363, 514
Hpy188III TCNNGA 3 cut(s) 61, 367, 505
Hpy8I GTNNAC 4 cut(s) 119, 321, 590, 763
Hpy99I CGWCG 1 cut(s) 211
HpyAV CCTTC 3 cut(s) 147, 415, 629
HpyCH4III ACNGT 4 cut(s) 19, 103, 343, 632
HpyCH4IV ACGT 3 cut(s) 317, 573, 648
HpyCH4V TGCA 4 cut(s) 181, 524, 536, 666
HpyF10VI GCNNNNNNNGC 2 cut(s) 542, 551
HpyF3I CTNAG 3 cut(s) 219, 428, 754
HpySE526I ACGT 3 cut(s) 317, 573, 648
Hsp92II CATG 5 cut(s) 236, 492, 670, 732, 808
KspAI GTTAAC 1 cut(s) 763
Kzo9I GATC 8 cut(s) 57, 302, 352, 363, 412, 439, 558, 660
LmnI GCTCC 4 cut(s) 287, 325, 653, 723
Lsp1109I GCAGC 2 cut(s) 557, 721
MaeI CTAG 2 cut(s) 623, 644
MaeII ACGT 3 cut(s) 317, 573, 648
MaeIII GTNAC 5 cut(s) 3, 226, 266, 626, 709
MalI GATC 8 cut(s) 59, 304, 354, 365, 414, 441, 560, 662
MbiI CCGCTC 1 cut(s) 113
MboI GATC 8 cut(s) 57, 302, 352, 363, 412, 439, 558, 660
MfeI CAATTG 1 cut(s) 841
MflI RGATCY 4 cut(s) 302, 352, 412, 439
MhlI GDGCHC 3 cut(s) 128, 728, 755
MluCI AATT 3 cut(s) 277, 373, 841
MmeI TCCRAC 1 cut(s) 631
MnlI CCTC 4 cut(s) 255, 261, 508, 812
MseI TTAA 2 cut(s) 72, 762
MslI CAYNNNNRTG 1 cut(s) 809
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 3 cut(s) 96, 257, 549
MspR9I CCNGG 5 cut(s) 96, 417, 550, 584, 721
MunI CAATTG 1 cut(s) 841
MvaI CCWGG 3 cut(s) 417, 584, 721
MwoI GCNNNNNNNGC 2 cut(s) 542, 551
NciI CCSGG 2 cut(s) 96, 550
NdeII GATC 8 cut(s) 57, 302, 352, 363, 412, 439, 558, 660
NlaIII CATG 5 cut(s) 236, 492, 670, 732, 808
NlaIV GGNNCC 5 cut(s) 94, 100, 327, 450, 655
NmuCI GTSAC 2 cut(s) 3, 226
NspI RCATGY 2 cut(s) 236, 670
PciI ACATGT 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 654
PfeI GAWTC 3 cut(s) 64, 142, 187
PfoI TCCNGGA 1 cut(s) 94
PkrI GCNGC 3 cut(s) 112, 547, 736
PpuMI RGGWCCY 1 cut(s) 92
PscI ACATGT 1 cut(s) 232
PshAI GACNNNNGTC 1 cut(s) 233
Psp124BI GAGCTC 2 cut(s) 728, 755
Psp5II RGGWCCY 1 cut(s) 92
Psp6I CCWGG 3 cut(s) 415, 582, 719
PspGI CCWGG 3 cut(s) 415, 582, 719
PspN4I GGNNCC 5 cut(s) 94, 100, 327, 450, 655
PspPI GGNCC 2 cut(s) 92, 449
PspPPI RGGWCCY 1 cut(s) 92
PsuI RGATCY 4 cut(s) 302, 352, 412, 439
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 809
SacI GAGCTC 2 cut(s) 728, 755
SaqAI TTAA 2 cut(s) 72, 762
SatI GCNGC 3 cut(s) 111, 546, 735
Sau3AI GATC 8 cut(s) 57, 302, 352, 363, 412, 439, 558, 660
Sau96I GGNCC 2 cut(s) 92, 449
ScrFI CCNGG 5 cut(s) 96, 417, 550, 584, 721
SduI GDGCHC 3 cut(s) 128, 728, 755
SinI GGWCC 2 cut(s) 92, 449
SmiMI CAYNNNNRTG 1 cut(s) 809
SmlI CTYRAG 1 cut(s) 613
SmoI CTYRAG 1 cut(s) 613
Sse9I AATT 3 cut(s) 277, 373, 841
SsiI CCGC 9 cut(s) 23, 111, 197, 248, 260, 308, 554, 641, 758
SspMI CTAG 2 cut(s) 623, 644
SstI GAGCTC 2 cut(s) 728, 755
StyD4I CCNGG 5 cut(s) 94, 415, 548, 582, 719
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 4 cut(s) 19, 103, 343, 632
TaiI ACGT 3 cut(s) 320, 576, 651
TaqI TCGA 3 cut(s) 60, 140, 185
TasI AATT 3 cut(s) 277, 373, 841
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 3 cut(s) 64, 142, 187
Tru1I TTAA 2 cut(s) 72, 762
Tru9I TTAA 2 cut(s) 72, 762
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 2 cut(s) 3, 226
TseI GCWGC 2 cut(s) 545, 734
Tsp45I GTSAC 2 cut(s) 3, 226
TspDTI ATGAA 4 cut(s) 17, 191, 451, 477
TspGWI ACGGA 6 cut(s) 162, 195, 338, 390, 441, 490
TspRI CASTG 1 cut(s) 531
VpaK11BI GGWCC 2 cut(s) 92, 449
XceI RCATGY 2 cut(s) 236, 670
XspI CTAG 2 cut(s) 623, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.