Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006639

Physical Location & Seq

Genomic Coordinates Reverse (-)

58416602 .. 58419544

Gene Structure 2943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030249

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAGTTAGGAGAAGGTTTGGAAACTGACCGGTCCAAGGTACTTGATGCATTGGCTCTACAGAACTGTCCTCGAGCATATCTCGAGATTTATTTCTTTGCCATCTGCAACATCCAGTCCGCATTACATGAATTGGTCATTTCCAAGGACCCGGAGAATCTCGGGGAAATTGCGTTTAGGGAGTTTGTGAATTTGGTTAAGGAAGAGAATGATGTTTCCGAAGAGACTTTGTCTGAAGTTTTCGCTGTTGCATTTGCTGTACTTGCTGCTGGTGTTGTCATTTTGACATTGAATGTACTCCTACTGGACAATGTGATATTGAAGGTTGTTGTAGTAAGCATTACACTGGCTTGGAGTTCTTGGTCTGCATATCCTTTCATGAGTTCAGCAGTCAACCCCAGGAGAAAAGCTCTAGCACTTTACCCAGTTTTCTTGCTGGCCGGCCCTGCCTCCGTCTCCGACTTCAAGTACCTCGTGGTGCACCTCCACTGCCCTCTTCTCCGCTGGCATCCAACGAGTCAAGCCATCCTCCGCATCCACCGAGTGAACTCGTGTGCTGACGCCATCGACAACAGATTTGCCATTCTCTGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

199

Amino Acids

21.97

Weight (kDa)

5.33

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18840 AT4G30260 AT4G30260 AT4G30260
fragaria_vesca	FvH4_4g09840 FvH4_4g09840
malus_domestica	MD13G1256000.v1.1 MD13G1256300.v1.1
prunus_persica	Prupe.1G086600_v2.0.a1
pyrus_communis	pycom13g22680 pycom13g22700
rosa_chinensis	RchiOBHm_Chr4g0402611 RchiOBHm_Chr4g0439321
rosa_laevigata	RLG00000009061 RLG00000029975 RLG00000030249
rosa_multiflora	Rmu_sc0013411.1_g000013
rosa_roxburghii	Rroxscaffold_3G00237110 Rroxscaffold_5G00347330
rosa_rugosa	Rorug01G0138600.1 Rorug04G0037100
rosa_samantha	Rh4AG114600 Rh4BG107000 Rh4DG106900 Rh6BG193500
rosa_wichuraiana	Rw4G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	120, 502, 532
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	561
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	4 cut(s)	42, 261, 297, 470
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgeI	ACCGGT	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	292, 322, 466
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	1 cut(s)	410
AluI	AGCT	1 cut(s)	410
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	2 cut(s)	218, 460
Alw44I	GTGCAC	1 cut(s)	479
Ama87I	CYCGRG	3 cut(s)	72, 83, 161
AoxI	GGCC	2 cut(s)	438, 442
ApaLI	GTGCAC	1 cut(s)	479
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	190
ArsI	GACNNNNNNTTYG	2 cut(s)	560, 592
AsiGI	ACCGGT	1 cut(s)	30
AspS9I	GGNCC	3 cut(s)	33, 148, 443
AsuC2I	CCSGG	1 cut(s)	152
AvaI	CYCGRG	3 cut(s)	72, 83, 161
AvaII	GGWCC	2 cut(s)	33, 148
BaeGI	GKGCMC	1 cut(s)	483
BauI	CACGAG	2 cut(s)	473, 550
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	3 cut(s)	110, 533, 572
BciT130I	CCWGG	1 cut(s)	400
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	218, 460
BfaI	CTAG	1 cut(s)	413
BfmI	CTRYAG	1 cut(s)	59
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	152, 400
Bme18I	GGWCC	2 cut(s)	33, 148
BmeT110I	CYCGRG	3 cut(s)	72, 83, 161
BmgT120I	GGNCC	3 cut(s)	33, 148, 443
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	2 cut(s)	152, 400
BmrI	ACTGGG	1 cut(s)	419
BmsI	GCATC	3 cut(s)	37, 517, 543
BmuI	ACTGGG	1 cut(s)	419
BplI	GAGNNNNNCTC	4 cut(s)	66, 98, 394, 426
BpuMI	CCSGG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	561
BsaJI	CCNNGG	3 cut(s)	36, 144, 398
BsaWI	WCCGGW	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	2 cut(s)	30, 440
Bse1I	ACTGG	4 cut(s)	115, 309, 351, 425
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	3 cut(s)	36, 144, 398
BseGI	GGATG	4 cut(s)	111, 508, 525, 534
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseNI	ACTGG	4 cut(s)	115, 309, 351, 425
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	253
BshFI	GGCC	2 cut(s)	440, 444
BshTI	ACCGGT	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	483
BsiHKCI	CYCGRG	3 cut(s)	72, 83, 161
BsiSI	CCGG	3 cut(s)	31, 152, 441
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	2 cut(s)	218, 460
BsmBI	CGTCTC	1 cut(s)	460
BsnI	GGCC	2 cut(s)	440, 444
BsoBI	CYCGRG	3 cut(s)	72, 83, 161
Bsp1286I	GDGCHC	1 cut(s)	483
BspACI	CCGC	3 cut(s)	120, 502, 532
BspANI	GGCC	2 cut(s)	440, 444
BspHI	TCATGA	2 cut(s)	378, 593
BspLI	GGNNCC	1 cut(s)	150
BsrFI	RCCGGY	2 cut(s)	30, 440
BsrI	ACTGG	4 cut(s)	115, 309, 351, 425
BssAI	RCCGGY	2 cut(s)	30, 440
BssECI	CCNNGG	3 cut(s)	36, 144, 398
BssNI	GRCGYC	1 cut(s)	561
BssSI	CACGAG	2 cut(s)	473, 550
BssT1I	CCWWGG	2 cut(s)	36, 144
Bst2BI	CACGAG	2 cut(s)	473, 550
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	3 cut(s)	198, 216, 501
BstACI	GRCGYC	1 cut(s)	561
BstC8I	GCNNGC	3 cut(s)	438, 442, 506
BstF5I	GGATG	4 cut(s)	111, 508, 525, 534
BstMAI	GTCTC	2 cut(s)	218, 460
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 446
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	150, 398
BstSFI	CTRYAG	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	483
BstV1I	GCAGC	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	440, 444
BtsCI	GGATG	4 cut(s)	111, 508, 525, 534
BtsI	GCAGTG	1 cut(s)	487
BtsIMutI	CAGTG	2 cut(s)	344, 487
Cac8I	GCNNGC	3 cut(s)	438, 442, 506
CciI	TCATGA	2 cut(s)	378, 593
Cfr10I	RCCGGY	2 cut(s)	30, 440
Cfr13I	GGNCC	3 cut(s)	33, 148, 443
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	4 cut(s)	41, 260, 296, 469
CspAI	ACCGGT	1 cut(s)	30
CviAII	CATG	3 cut(s)	128, 379, 594
CviJI	RGCY	6 cut(s)	56, 350, 410, 440, 444, 524
CviKI_1	RGCY	6 cut(s)	56, 350, 410, 440, 444, 524
CviQI	GTAC	4 cut(s)	41, 260, 296, 469
DraIII	CACNNNGTG	1 cut(s)	544
EaeI	YGGCCR	1 cut(s)	438
Eam1104I	CTCTTC	3 cut(s)	198, 216, 501
EarI	CTCTTC	3 cut(s)	198, 216, 501
Eco130I	CCWWGG	2 cut(s)	36, 144
Eco47I	GGWCC	2 cut(s)	33, 148
Eco57I	CTGAAG	1 cut(s)	255
Eco88I	CYCGRG	3 cut(s)	72, 83, 161
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	398
EcoT14I	CCWWGG	2 cut(s)	36, 144
EcoT22I	ATGCAT	1 cut(s)	52
ErhI	CCWWGG	2 cut(s)	36, 144
Esp3I	CGTCTC	1 cut(s)	460
FaeI	CATG	3 cut(s)	131, 382, 597
FaiI	YATR	5 cut(s)	79, 129, 370, 380, 595
FatI	CATG	3 cut(s)	127, 378, 593
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	4 cut(s)	98, 495, 512, 521
FseI	GGCCGGCC	1 cut(s)	444
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	440, 444
HapII	CCGG	3 cut(s)	31, 152, 441
HgaI	GACGC	1 cut(s)	569
Hin1I	GRCGYC	1 cut(s)	561
Hin1II	CATG	3 cut(s)	131, 382, 597
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	2 cut(s)	157, 517
HpaII	CCGG	3 cut(s)	31, 152, 441
Hpy166II	GTNNAC	3 cut(s)	394, 481, 547
Hpy188I	TCNGA	3 cut(s)	220, 235, 460
Hpy188III	TCNNGA	4 cut(s)	83, 85, 379, 594
Hpy8I	GTNNAC	3 cut(s)	394, 481, 547
HpyAV	CCTTC	2 cut(s)	8, 316
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	5 cut(s)	50, 108, 251, 368, 481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 446
Hsp92I	GRCGYC	1 cut(s)	561
Hsp92II	CATG	3 cut(s)	131, 382, 597
KroI	GCCGGC	1 cut(s)	440
KroNI	GCCGGC	1 cut(s)	442
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	3 cut(s)	37, 517, 543
MaeI	CTAG	1 cut(s)	413
MboII	GAAGA	3 cut(s)	215, 233, 488
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	3 cut(s)	131, 168, 190
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	2 cut(s)	483, 536
MnlI	CCTC	6 cut(s)	81, 460, 482, 494, 504, 539
Mph1103I	ATGCAT	1 cut(s)	52
MroNI	GCCGGC	1 cut(s)	440
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	504
MspI	CCGG	3 cut(s)	31, 152, 441
MspR9I	CCNGG	2 cut(s)	152, 400
MvaI	CCWGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	2 cut(s)	263, 446
NaeI	GCCGGC	1 cut(s)	442
NciI	CCSGG	1 cut(s)	152
NgoMIV	GCCGGC	1 cut(s)	440
NlaIII	CATG	3 cut(s)	131, 382, 597
NlaIV	GGNNCC	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	52
PaeR7I	CTCGAG	2 cut(s)	72, 83
PagI	TCATGA	2 cut(s)	378, 593
PdiI	GCCGGC	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	157
PflFI	GACNNNGTC	1 cut(s)	229
PinAI	ACCGGT	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
PpuMI	RGGWCCY	1 cut(s)	148
Psp5II	RGGWCCY	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	3 cut(s)	33, 148, 443
PspPPI	RGGWCCY	1 cut(s)	148
PspXI	VCTCGAGB	1 cut(s)	72
PsyI	GACNNNGTC	1 cut(s)	229
RigI	GGCCGGCC	1 cut(s)	444
RsaI	GTAC	4 cut(s)	42, 261, 297, 470
RsaNI	GTAC	4 cut(s)	41, 260, 296, 469
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	267
Sau96I	GGNCC	3 cut(s)	33, 148, 443
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	2 cut(s)	152, 400
SduI	GDGCHC	1 cut(s)	483
SetI	ASST	6 cut(s)	19, 42, 327, 412, 474, 486
SfaNI	GCATC	3 cut(s)	37, 517, 543
SfcI	CTRYAG	1 cut(s)	59
Sfr274I	CTCGAG	2 cut(s)	72, 83
SinI	GGWCC	2 cut(s)	33, 148
SlaI	CTCGAG	2 cut(s)	72, 83
SmlI	CTYRAG	2 cut(s)	72, 83
SmoI	CTYRAG	2 cut(s)	72, 83
Sse9I	AATT	3 cut(s)	131, 168, 190
SsiI	CCGC	3 cut(s)	120, 502, 532
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	2 cut(s)	150, 398
StyI	CCWWGG	2 cut(s)	36, 144
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	3 cut(s)	73, 84, 567
TasI	AATT	3 cut(s)	131, 168, 190
TatI	WGTACW	2 cut(s)	259, 295
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	2 cut(s)	351, 494
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	3 cut(s)	144, 367, 582
TspGWI	ACGGA	1 cut(s)	442
TspRI	CASTG	2 cut(s)	351, 494
Tth111I	GACNNNGTC	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	479
VpaK11BI	GGWCC	2 cut(s)	33, 148
XapI	RAATTY	1 cut(s)	190
XhoI	CTCGAG	2 cut(s)	72, 83
XspI	CTAG	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.