Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006639

Physical Location & Seq

Genomic Coordinates Reverse (-)

12070926 .. 12072707

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCGCACTCGCACTCCCACAGCGACACCGTCCCCCTCCACCCCTCCTCCCAGTCTGACATCGACGAGATCGAAAACCTAATCAACGCCAGCGTCCAATCGGGCCCCACCACCGTCCTCCCCGCCAAGCCTCCCAGCCCCACTCGCGCCTCCATCCCCGTCTCCTCCTCCCCCTTCATCCAATCCAACCTCCCCCCTCCCCCTTCCTCCTCCAAGCCCAATCCCAAGCCGCCATCTGTCCCCGCCCCTCCTCCCGTCCCCTCCGCCACTTCCACCACCAACGGCGCCCCTTCCGGGTTCGGCTCCCCGCCCAACACCTTGACCGAGCCCGTTTGGGACACCGTCAAGCGTGACCTGTCCAGGATCGTCAGCAATCTCAAGCTCGTCGTGTTTCCTAACCCTTACCGTGAGGACCCCGGGAAGGCTCTCAGGGATTGGGATCTGTGGGGCCCTTTCTTCTTCATTGTGTTCTTGGGCCTCACTCTCTCCTGGTCTGCCTCTGTCAAAAAGTCTGAAGTTTTCGCGGTTGCGTTTGCTGTACTTGCTGCTGGTGCTGTGATTTTGACATTGAATGTACTCCTACTGGGCGGACACATAATTTTCTTTCAGAGCCTGAGTCTTCTTGGTTATTGCTTATTCCCTCTGGATGTTGGAGCTTTAATCTGTATGGTGAAGGACAATGTGATATTGAAGGTGGTTGTAGTAAGCATTACACTGGCTTGGAGTTCTTGGTCTGCATATCCTTTCATGAGTTCAGCAGTCAACCCCAGGAGAAAAGCTCTTGCACTTTACCCAGTTTTCTTGCTGTATGTATCTGTTGGTTTTCTTATCATTGCCATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

282

Amino Acids

30.09

Weight (kDa)

8.53

Isoelectric Point (pI)

58.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yip1	PF04893	143 - 275	4.6e-15	Yip1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18840 AT4G30260 AT4G30260 AT4G30260
fragaria_vesca	FvH4_4g09840 FvH4_4g09840
malus_domestica	MD13G1256000.v1.1 MD13G1256300.v1.1
prunus_persica	Prupe.1G086600_v2.0.a1
pyrus_communis	pycom13g22680 pycom13g22700
rosa_chinensis	RchiOBHm_Chr4g0402611 RchiOBHm_Chr4g0439321
rosa_laevigata	RLG00000009061 RLG00000029975 RLG00000030249
rosa_multiflora	Rmu_sc0013411.1_g000013
rosa_roxburghii	Rroxscaffold_3G00237110 Rroxscaffold_5G00347330
rosa_rugosa	Rorug01G0138600.1 Rorug04G0037100
rosa_samantha	Rh4AG114600 Rh4BG107000 Rh4DG106900 Rh6BG193500
rosa_wichuraiana	Rw4G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccII	CGCG	2 cut(s)	147, 524
AciI	CCGC	7 cut(s)	123, 230, 243, 264, 308, 524, 588
AclWI	GGATC	2 cut(s)	371, 447
AcuI	CTGAAG	1 cut(s)	534
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	2 cut(s)	540, 576
AfiI	CCNNNNNNNGG	2 cut(s)	294, 421
AgsI	TTSAA	2 cut(s)	571, 691
AjnI	CCWGG	3 cut(s)	359, 488, 767
AluBI	AGCT	3 cut(s)	382, 656, 779
AluI	AGCT	3 cut(s)	382, 656, 779
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	2 cut(s)	371, 447
AlwNI	CAGNNNCTG	1 cut(s)	613
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	3 cut(s)	103, 448, 475
ApaI	GGGCCC	2 cut(s)	107, 452
ApeKI	GCWGC	1 cut(s)	545
AspLEI	GCGC	2 cut(s)	149, 287
AspS9I	GGNCC	6 cut(s)	103, 104, 412, 448, 449, 475
AsuC2I	CCSGG	3 cut(s)	295, 417, 418
AsuHPI	GGTGA	1 cut(s)	682
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	412
BaeGI	GKGCMC	2 cut(s)	107, 452
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	3 cut(s)	107, 330, 452
BbsI	GAAGAC	1 cut(s)	611
BbvI	GCAGC	1 cut(s)	532
BccI	CCATC	2 cut(s)	161, 241
BceAI	ACGGC	1 cut(s)	298
BciT130I	CCWGG	3 cut(s)	361, 490, 769
BcnI	CCSGG	3 cut(s)	295, 417, 418
BcoDI	GTCTC	1 cut(s)	166
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	2 cut(s)	230, 546
BlsI	GCNGC	2 cut(s)	231, 547
Bme1390I	CCNGG	6 cut(s)	295, 361, 417, 418, 490, 769
Bme18I	GGWCC	1 cut(s)	412
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	6 cut(s)	103, 104, 412, 448, 449, 475
BmiI	GGNNCC	7 cut(s)	105, 106, 286, 304, 414, 449, 450
BmrFI	CCNGG	6 cut(s)	295, 361, 417, 418, 490, 769
BmrI	ACTGGG	3 cut(s)	46, 593, 788
BmuI	ACTGGG	3 cut(s)	46, 593, 788
BpiI	GAAGAC	1 cut(s)	611
BplI	GAGNNNNNCTC	2 cut(s)	763, 795
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	3 cut(s)	295, 417, 418
BsaBI	GATNNNNATC	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	415, 416, 767
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 32, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 421
Bse1I	ACTGG	4 cut(s)	52, 588, 720, 794
Bse3DI	GCAATG	1 cut(s)	831
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	3 cut(s)	361, 490, 769
BseDI	CCNNGG	3 cut(s)	415, 416, 767
BseGI	GGATG	3 cut(s)	153, 177, 652
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	2 cut(s)	294, 421
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	2 cut(s)	442, 605
BseNI	ACTGG	4 cut(s)	52, 588, 720, 794
BseRI	GAGGAG	5 cut(s)	37, 154, 157, 199, 240
BseSI	GKGCMC	2 cut(s)	107, 452
BseXI	GCAGC	1 cut(s)	532
BseYI	CCCAGC	1 cut(s)	134
Bsh1236I	CGCG	2 cut(s)	147, 524
BshFI	GGCC	3 cut(s)	105, 450, 477
BshNI	GGYRCC	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	294, 417
BslFI	GGGAC	4 cut(s)	17, 224, 242, 350
BslI	CCNNNNNNNGG	2 cut(s)	294, 421
BsmAI	GTCTC	1 cut(s)	166
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	4 cut(s)	17, 224, 242, 350
BsnI	GGCC	3 cut(s)	105, 450, 477
BsoBI	CYCGRG	1 cut(s)	416
Bsp120I	GGGCCC	2 cut(s)	103, 448
Bsp1286I	GDGCHC	3 cut(s)	107, 330, 452
Bsp143I	GATC	3 cut(s)	69, 363, 439
BspACI	CCGC	7 cut(s)	123, 230, 243, 264, 308, 524, 588
BspANI	GGCC	3 cut(s)	105, 450, 477
BspCNI	CTCAG	2 cut(s)	441, 606
BspFNI	CGCG	2 cut(s)	147, 524
BspHI	TCATGA	1 cut(s)	747
BspLI	GGNNCC	7 cut(s)	105, 106, 286, 304, 414, 449, 450
BspPI	GGATC	2 cut(s)	371, 447
BspT107I	GGYRCC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	831
BsrI	ACTGG	4 cut(s)	52, 588, 720, 794
BssECI	CCNNGG	3 cut(s)	415, 416, 767
BssMI	GATC	3 cut(s)	69, 363, 439
BssNI	GRCGYC	1 cut(s)	285
Bst2UI	CCWGG	3 cut(s)	361, 490, 769
Bst4CI	ACNGT	4 cut(s)	31, 115, 343, 407
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	428, 614
BstF5I	GGATG	3 cut(s)	153, 177, 652
BstFNI	CGCG	2 cut(s)	147, 524
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	149, 287
BstKTI	GATC	3 cut(s)	72, 366, 442
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	3 cut(s)	69, 363, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 542, 551
BstNI	CCWGG	3 cut(s)	361, 490, 769
BstSCI	CCNGG	6 cut(s)	293, 359, 415, 416, 488, 767
BstSLI	GKGCMC	2 cut(s)	107, 452
BstUI	CGCG	2 cut(s)	147, 524
BstV1I	GCAGC	1 cut(s)	532
BstV2I	GAAGAC	1 cut(s)	611
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuRI	GGCC	3 cut(s)	105, 450, 477
BtsCI	GGATG	3 cut(s)	153, 177, 652
BtsIMutI	CAGTG	1 cut(s)	713
Cac8I	GCNNGC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	613
CciI	TCATGA	1 cut(s)	747
CfoI	GCGC	2 cut(s)	149, 287
Cfr13I	GGNCC	6 cut(s)	103, 104, 412, 448, 449, 475
Cfr9I	CCCGGG	1 cut(s)	416
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	539, 575
CviAII	CATG	1 cut(s)	748
CviQI	GTAC	2 cut(s)	539, 575
DdeI	CTNAG	2 cut(s)	428, 614
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	3 cut(s)	71, 365, 441
DpnII	GATC	3 cut(s)	69, 363, 439
EciI	GGCGGA	2 cut(s)	253, 603
Eco24I	GRGCYC	3 cut(s)	107, 330, 452
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	416
EcoO109I	RGGNCCY	4 cut(s)	104, 412, 448, 449
EcoRII	CCWGG	3 cut(s)	359, 488, 767
EcoT38I	GRGCYC	3 cut(s)	107, 330, 452
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	1 cut(s)	751
FaiI	YATR	5 cut(s)	596, 668, 739, 749, 810
FaqI	GGGAC	4 cut(s)	17, 224, 242, 350
FatI	CATG	1 cut(s)	747
FauI	CCCGC	3 cut(s)	130, 250, 315
Fnu4HI	GCNGC	2 cut(s)	230, 546
FokI	GGATG	3 cut(s)	140, 164, 659
FriOI	GRGCYC	3 cut(s)	107, 330, 452
Fsp4HI	GCNGC	2 cut(s)	230, 546
GlaI	GCGC	2 cut(s)	148, 286
GluI	GCNGC	2 cut(s)	230, 546
GsaI	CCCAGC	1 cut(s)	138
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	105, 450, 477
HapII	CCGG	2 cut(s)	294, 417
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	2 cut(s)	149, 287
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	751
Hin6I	GCGC	2 cut(s)	147, 285
HinP1I	GCGC	2 cut(s)	147, 285
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HinfI	GANTC	1 cut(s)	616
HpaII	CCGG	2 cut(s)	294, 417
HphI	GGTGA	1 cut(s)	682
Hpy166II	GTNNAC	1 cut(s)	763
Hpy188I	TCNGA	3 cut(s)	58, 514, 609
Hpy188III	TCNNGA	2 cut(s)	644, 748
Hpy8I	GTNNAC	1 cut(s)	763
Hpy99I	CGWCG	2 cut(s)	68, 389
HpyAV	CCTTC	6 cut(s)	184, 213, 300, 415, 667, 685
HpyCH4III	ACNGT	4 cut(s)	31, 115, 343, 407
HpyCH4V	TGCA	2 cut(s)	737, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 542, 551
HpyF3I	CTNAG	2 cut(s)	428, 614
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	751
HspAI	GCGC	2 cut(s)	147, 285
KasI	GGCGCC	1 cut(s)	284
Kzo9I	GATC	3 cut(s)	69, 363, 439
LmnI	GCTCC	2 cut(s)	308, 653
Lsp1109I	GCAGC	1 cut(s)	532
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	3 cut(s)	71, 365, 441
MboI	GATC	3 cut(s)	69, 363, 439
MboII	GAAGA	3 cut(s)	448, 451, 611
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	3 cut(s)	107, 330, 452
MluCI	AATT	1 cut(s)	597
Mly113I	GGCGCC	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	625
MmeI	TCCRAC	2 cut(s)	210, 631
MseI	TTAA	2 cut(s)	659, 844
MspI	CCGG	2 cut(s)	294, 417
MspR9I	CCNGG	6 cut(s)	295, 361, 417, 418, 490, 769
MvaI	CCWGG	3 cut(s)	361, 490, 769
MvnI	CGCG	2 cut(s)	147, 524
MwoI	GCNNNNNNNGC	3 cut(s)	144, 542, 551
NarI	GGCGCC	1 cut(s)	285
NciI	CCSGG	3 cut(s)	295, 417, 418
NdeII	GATC	3 cut(s)	69, 363, 439
NlaIII	CATG	1 cut(s)	751
NlaIV	GGNNCC	7 cut(s)	105, 106, 286, 304, 414, 449, 450
NmuCI	GTSAC	1 cut(s)	350
PagI	TCATGA	1 cut(s)	747
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PflFI	GACNNNGTC	2 cut(s)	29, 341
PfoI	TCCNGGA	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	231, 547
PleI	GAGTC	1 cut(s)	624
PluTI	GGCGCC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	624
PpuMI	RGGWCCY	1 cut(s)	412
Psp5II	RGGWCCY	1 cut(s)	412
Psp6I	CCWGG	3 cut(s)	359, 488, 767
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	3 cut(s)	359, 488, 767
PspN4I	GGNNCC	7 cut(s)	105, 106, 286, 304, 414, 449, 450
PspOMI	GGGCCC	2 cut(s)	103, 448
PspPI	GGNCC	6 cut(s)	103, 104, 412, 448, 449, 475
PspPPI	RGGWCCY	1 cut(s)	412
PstNI	CAGNNNCTG	1 cut(s)	613
PsuI	RGATCY	1 cut(s)	439
PsyI	GACNNNGTC	2 cut(s)	29, 341
RsaI	GTAC	2 cut(s)	540, 576
RsaNI	GTAC	2 cut(s)	539, 575
SaqAI	TTAA	2 cut(s)	659, 844
SatI	GCNGC	2 cut(s)	230, 546
Sau3AI	GATC	3 cut(s)	69, 363, 439
Sau96I	GGNCC	6 cut(s)	103, 104, 412, 448, 449, 475
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	6 cut(s)	295, 361, 417, 418, 490, 769
SduI	GDGCHC	3 cut(s)	107, 330, 452
SetI	ASST	8 cut(s)	81, 192, 320, 357, 384, 658, 696, 781
SfoI	GGCGCC	1 cut(s)	286
SinI	GGWCC	1 cut(s)	412
SmaI	CCCGGG	1 cut(s)	418
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	1 cut(s)	597
SsiI	CCGC	7 cut(s)	123, 230, 243, 264, 308, 524, 588
SspDI	GGCGCC	1 cut(s)	284
StyD4I	CCNGG	6 cut(s)	293, 359, 415, 416, 488, 767
TaaI	ACNGT	4 cut(s)	31, 115, 343, 407
TaqI	TCGA	2 cut(s)	63, 72
TaqII	GACCGA	1 cut(s)	338
TasI	AATT	1 cut(s)	597
TatI	WGTACW	2 cut(s)	538, 574
TauI	GCSGC	1 cut(s)	232
Tru1I	TTAA	2 cut(s)	659, 844
Tru9I	TTAA	2 cut(s)	659, 844
TscAI	CASTG	1 cut(s)	720
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	1 cut(s)	545
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	3 cut(s)	166, 451, 736
TspMI	CCCGGG	1 cut(s)	416
TspRI	CASTG	1 cut(s)	720
Tth111I	GACNNNGTC	2 cut(s)	29, 341
VpaK11BI	GGWCC	1 cut(s)	412
XmaI	CCCGGG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.