Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006639

Physical Location & Seq

Genomic Coordinates Reverse (-)

61706355 .. 61707149

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40739

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTACTCCTACTGGGTGGACACTCAGAGCCCAAGTCTTCTTGGTTATTGCTTATTCCCTCTGGATGTTGGAGCTTTAATCTATATGGTGAAGGACAATGTGATATTGAAGGTTGTTGTAGTAAGCATTACACTAGCTTGGAGTTCTTGGTCTGCATATCCTTTCATGAGTTCAGCAGCCAACCCCGGGAGAAAAGCTCTACCACTTTACCCAGTTTTCTTGCTGTATGTATCTGTTGGTTTTCTTCTAAAAATGCAAGACGGGTTATATTTCAGTGATACTTTGAAATTGAGATATTGTTTTCTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

103

Amino Acids

11.69

Weight (kDa)

8.56

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yip1	PF04893	10 - 81	2.4e-06	Yip1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18840 AT4G30260 AT4G30260 AT4G30260
fragaria_vesca	FvH4_4g09840 FvH4_4g09840
malus_domestica	MD13G1256000.v1.1 MD13G1256300.v1.1
prunus_persica	Prupe.1G086600_v2.0.a1
pyrus_communis	pycom13g22680 pycom13g22700
rosa_chinensis	RchiOBHm_Chr4g0402611 RchiOBHm_Chr4g0439321
rosa_laevigata	RLG00000009061 RLG00000029975 RLG00000030249
rosa_multiflora	Rmu_sc0013411.1_g000013
rosa_roxburghii	Rroxscaffold_3G00237110 Rroxscaffold_5G00347330
rosa_rugosa	Rorug01G0138600.1 Rorug04G0037100
rosa_samantha	Rh4AG114600 Rh4BG107000 Rh4DG106900 Rh6BG193500
rosa_wichuraiana	Rw4G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	310
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	2 cut(s)	109, 286
AluBI	AGCT	3 cut(s)	74, 137, 197
AluI	AGCT	3 cut(s)	74, 137, 197
Ama87I	CYCGRG	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	176
AsuC2I	CCSGG	2 cut(s)	186, 187
AsuHPI	GGTGA	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	188
BcnI	CCSGG	2 cut(s)	186, 187
BfaI	CTAG	1 cut(s)	134
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	2 cut(s)	186, 187
BmeT110I	CYCGRG	1 cut(s)	185
BmrFI	CCNGG	2 cut(s)	186, 187
BmrI	ACTGGG	2 cut(s)	22, 206
BmuI	ACTGGG	2 cut(s)	22, 206
BpiI	GAAGAC	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpuMI	CCSGG	2 cut(s)	186, 187
BsaJI	CCNNGG	2 cut(s)	184, 185
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	2 cut(s)	17, 212
BseDI	CCNNGG	2 cut(s)	184, 185
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	17, 212
BseXI	GCAGC	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	186
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	37
BspHI	TCATGA	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	17, 212
BssECI	CCNNGG	2 cut(s)	184, 185
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	184, 185
BstV1I	GCAGC	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	280
CciI	TCATGA	1 cut(s)	165
Cfr9I	CCCGGG	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	5 cut(s)	30, 74, 137, 179, 197
CviKI_1	RGCY	5 cut(s)	30, 74, 137, 179, 197
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	1 cut(s)	169
FaiI	YATR	7 cut(s)	84, 86, 157, 167, 228, 268, 310
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	1 cut(s)	177
HapII	CCGG	1 cut(s)	186
Hin1II	CATG	1 cut(s)	169
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	2 cut(s)	62, 166
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	85, 103
HpyCH4V	TGCA	2 cut(s)	155, 256
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	3 cut(s)	47, 199, 225
Lsp1109I	GCAGC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	134
MboII	GAAGA	2 cut(s)	29, 236
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	77
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	2 cut(s)	186, 187
NciI	CCSGG	2 cut(s)	186, 187
NlaIII	CATG	1 cut(s)	169
PagI	TCATGA	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	178
PsiI	TTATAA	1 cut(s)	310
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	186, 187
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	4 cut(s)	76, 114, 139, 199
SmaI	CCCGGG	1 cut(s)	187
Sse9I	AATT	1 cut(s)	287
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	184, 185
TasI	AATT	1 cut(s)	287
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	154
TspMI	CCCGGG	1 cut(s)	185
TspRI	CASTG	1 cut(s)	280
XmaI	CCCGGG	1 cut(s)	185
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.