Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006639

Physical Location & Seq

Genomic Coordinates Reverse (-)

24664654 .. 24668499

Gene Structure 3846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCTAGCGTCCAATCGAACCCCACCACCGTCTTCCCCGCCAAGCCTCCCAGCCCCACCGCACCTCCATCCCCGTCTCCTCCTCCCCTTCATCCAATCTAACCTCCCCAATCGGCCCTTCCTCCTCTTCCAAGCCCTAGCAGCACCGTCCGTCCCCGCCCCTCCTCCCCGTCCCCTCCGCCGCCAACAACAACGGCCCCATAAACATCGCCACTTCGGGTTCGGGTCCCCGCCCAACACCCTAACGGAGCCCGTTTGGGATACCATCAAGAGGGACTTGTGTCGGATCGTCATCAATTTGAAGCTCGTCGTCTTCCTAACCCCTATCGAGGACACCGTAATCCGATGGGAAATGGTATTGATTTTTCACTCGTTGCGATTTTTCTCCGAAGTTTTCACCGTTGCATATGCTGTACTTGCCGATGGTGCTGTCATTGTGACATTGAATGTCCAAACCATCTTCCAAGAGTTGCAATTGTTAGAAGACCAAATGTTGGGACGCAATGTTGGTCCGGACTCGGAGCAAAGCTTTAGATCTCCGAAAGTGACAAGGGATGGGATCACTGAGAAAGATACTGAGGTTACTAACCATACTTGCCTTGAGAGATTCATACTTGATGAGTTCAGAGATGCTAAGAGAGCTATCTATGAAGGTTCAATTGGAGAAGCTAGTAATGGACTGATGCGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

230

Amino Acids

26.04

Weight (kDa)

8.69

Isoelectric Point (pI)

63.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18840 AT4G30260 AT4G30260 AT4G30260
fragaria_vesca	FvH4_4g09840 FvH4_4g09840
malus_domestica	MD13G1256000.v1.1 MD13G1256300.v1.1
prunus_persica	Prupe.1G086600_v2.0.a1
pyrus_communis	pycom13g22680 pycom13g22700
rosa_chinensis	RchiOBHm_Chr4g0402611 RchiOBHm_Chr4g0439321
rosa_laevigata	RLG00000009061 RLG00000029975 RLG00000030249
rosa_multiflora	Rmu_sc0013411.1_g000013
rosa_roxburghii	Rroxscaffold_3G00237110 Rroxscaffold_5G00347330
rosa_rugosa	Rorug01G0138600.1 Rorug04G0037100
rosa_samantha	Rh4AG114600 Rh4BG107000 Rh4DG106900 Rh6BG193500
rosa_wichuraiana	Rw4G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	493
AccIII	TCCGGA	1 cut(s)	511
AciI	CCGC	7 cut(s)	38, 59, 156, 178, 181, 230, 685
AclWI	GGATC	2 cut(s)	293, 566
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	3 cut(s)	270, 328, 493
AgsI	TTSAA	3 cut(s)	301, 445, 657
AjuI	GAANNNNNNNTTGG	4 cut(s)	101, 133, 642, 674
AluBI	AGCT	4 cut(s)	304, 528, 641, 668
AluI	AGCT	4 cut(s)	304, 528, 641, 668
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	2 cut(s)	293, 566
Aor13HI	TCCGGA	1 cut(s)	511
AoxI	GGCC	2 cut(s)	113, 194
ApeKI	GCWGC	1 cut(s)	140
AspS9I	GGNCC	4 cut(s)	114, 195, 225, 509
AsuHPI	GGTGA	1 cut(s)	388
AsuNHI	GCTAGC	1 cut(s)	4
AvaII	GGWCC	2 cut(s)	225, 509
BaeI	ACNNNNGTAYC	2 cut(s)	564, 597
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	3 cut(s)	24, 304, 489
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	6 cut(s)	75, 272, 339, 416, 464, 548
BceAI	ACGGC	1 cut(s)	209
BciVI	GTATCC	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	3 cut(s)	5, 137, 669
BfuI	GTATCC	1 cut(s)	253
BglII	AGATCT	1 cut(s)	533
BisI	GCNGC	2 cut(s)	141, 181
BlsI	GCNGC	2 cut(s)	142, 182
Bme18I	GGWCC	2 cut(s)	225, 509
BmgT120I	GGNCC	4 cut(s)	114, 195, 225, 509
BmiI	GGNNCC	4 cut(s)	197, 226, 227, 249
BmsI	GCATC	2 cut(s)	619, 672
BmtI	GCTAGC	1 cut(s)	8
BoxI	GACNNNNGTC	1 cut(s)	279
BpiI	GAAGAC	3 cut(s)	24, 304, 489
BpuEI	CTTGAG	1 cut(s)	620
BsaBI	GATNNNNATC	1 cut(s)	290
BsaWI	WCCGGW	1 cut(s)	511
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	3 cut(s)	270, 328, 493
Bse3DI	GCAATG	1 cut(s)	508
Bse8I	GATNNNNATC	1 cut(s)	290
BseAI	TCCGGA	1 cut(s)	511
BseGI	GGATG	3 cut(s)	67, 90, 559
BseJI	GATNNNNATC	1 cut(s)	290
BseLI	CCNNNNNNNGG	3 cut(s)	270, 328, 493
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	2 cut(s)	555, 567
BseRI	GAGGAG	4 cut(s)	68, 71, 113, 153
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	49
BshFI	GGCC	2 cut(s)	115, 196
BsiSI	CCGG	1 cut(s)	512
BslFI	GGGAC	5 cut(s)	137, 156, 211, 287, 510
BslI	CCNNNNNNNGG	3 cut(s)	270, 328, 493
BsmAI	GTCTC	1 cut(s)	80
BsmBI	CGTCTC	1 cut(s)	80
BsmFI	GGGAC	5 cut(s)	137, 156, 211, 287, 510
BsnI	GGCC	2 cut(s)	115, 196
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp13I	TCCGGA	1 cut(s)	511
Bsp143I	GATC	3 cut(s)	285, 533, 558
BspACI	CCGC	7 cut(s)	38, 59, 156, 178, 181, 230, 685
BspANI	GGCC	2 cut(s)	115, 196
BspCNI	CTCAG	2 cut(s)	556, 568
BspEI	TCCGGA	1 cut(s)	511
BspHI	TCATGA	1 cut(s)	689
BspLI	GGNNCC	4 cut(s)	197, 226, 227, 249
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	2 cut(s)	293, 566
BsrDI	GCAATG	1 cut(s)	508
BssMI	GATC	3 cut(s)	285, 533, 558
Bst4CI	ACNGT	4 cut(s)	30, 147, 337, 400
Bst6I	CTCTTC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	564, 576, 633
BstF5I	GGATG	3 cut(s)	67, 90, 559
BstKTI	GATC	3 cut(s)	288, 536, 561
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	3 cut(s)	285, 533, 558
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 416, 425, 638
BstPAI	GACNNNNGTC	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	152
BstV2I	GAAGAC	3 cut(s)	24, 304, 489
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
BsuI	GTATCC	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	115, 196
BtgZI	GCGATG	1 cut(s)	191
BtsCI	GGATG	3 cut(s)	67, 90, 559
BtsIMutI	CAGTG	1 cut(s)	561
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	689
Cfr13I	GGNCC	4 cut(s)	114, 195, 225, 509
CseI	GACGC	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	1 cut(s)	690
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	3 cut(s)	564, 576, 633
DpnI	GATC	3 cut(s)	287, 535, 560
DpnII	GATC	3 cut(s)	285, 533, 558
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	225, 509
EcoO109I	RGGNCCY	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	1 cut(s)	693
FaiI	YATR	7 cut(s)	201, 406, 408, 591, 611, 648, 691
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	5 cut(s)	137, 156, 211, 287, 510
FatI	CATG	1 cut(s)	689
FauI	CCCGC	3 cut(s)	45, 163, 237
FauNDI	CATATG	1 cut(s)	406
Fnu4HI	GCNGC	2 cut(s)	141, 181
FokI	GGATG	3 cut(s)	54, 77, 566
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	141, 181
FspBI	CTAG	3 cut(s)	5, 137, 669
GluI	GCNGC	2 cut(s)	141, 181
GsaI	CCCAGC	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	115, 196
HapII	CCGG	1 cut(s)	512
HgaI	GACGC	1 cut(s)	507
Hin1II	CATG	1 cut(s)	693
HindIII	AAGCTT	1 cut(s)	526
HinfI	GANTC	2 cut(s)	515, 606
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	1 cut(s)	388
Hpy188I	TCNGA	6 cut(s)	285, 344, 388, 520, 540, 626
Hpy188III	TCNNGA	3 cut(s)	268, 512, 690
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	97, 127, 644
HpyCH4III	ACNGT	4 cut(s)	30, 147, 337, 400
HpyCH4V	TGCA	2 cut(s)	404, 472
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 416, 425, 638
HpyF3I	CTNAG	3 cut(s)	564, 576, 633
Hsp92II	CATG	1 cut(s)	693
KflI	GGGWCCC	1 cut(s)	225
Kpn2I	TCCGGA	1 cut(s)	511
Kzo9I	GATC	3 cut(s)	285, 533, 558
LmnI	GCTCC	2 cut(s)	247, 520
LpnPI	CCDG	2 cut(s)	63, 525
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	2 cut(s)	619, 672
MaeI	CTAG	3 cut(s)	5, 137, 669
MaeIII	GTNAC	3 cut(s)	436, 544, 580
MalI	GATC	3 cut(s)	287, 535, 560
MboI	GATC	3 cut(s)	285, 533, 558
MboII	GAAGA	5 cut(s)	24, 118, 304, 451, 494
MfeI	CAATTG	2 cut(s)	473, 657
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	3 cut(s)	295, 473, 657
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	263
MroI	TCCGGA	1 cut(s)	511
MspI	CCGG	1 cut(s)	512
MunI	CAATTG	2 cut(s)	473, 657
MwoI	GCNNNNNNNGC	4 cut(s)	140, 416, 425, 638
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	3 cut(s)	285, 533, 558
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	693
NlaIV	GGNNCC	4 cut(s)	197, 226, 227, 249
NmuCI	GTSAC	2 cut(s)	436, 544
PagI	TCATGA	1 cut(s)	689
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	606
PflMI	CCANNNNNTGG	1 cut(s)	493
PkrI	GCNGC	2 cut(s)	142, 182
PleI	GAGTC	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	509
PpuMI	RGGWCCY	1 cut(s)	225
PshAI	GACNNNNGTC	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	49
PspN4I	GGNNCC	4 cut(s)	197, 226, 227, 249
PspPI	GGNCC	4 cut(s)	114, 195, 225, 509
PspPPI	RGGWCCY	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
SatI	GCNGC	2 cut(s)	141, 181
Sau3AI	GATC	3 cut(s)	285, 533, 558
Sau96I	GGNCC	4 cut(s)	114, 195, 225, 509
SchI	GAGTC	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	8 cut(s)	66, 105, 306, 530, 582, 643, 655, 670
SfaNI	GCATC	2 cut(s)	619, 672
SinI	GGWCC	2 cut(s)	225, 509
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	3 cut(s)	295, 473, 657
SsiI	CCGC	7 cut(s)	38, 59, 156, 178, 181, 230, 685
SspMI	CTAG	3 cut(s)	5, 137, 669
TaaI	ACNGT	4 cut(s)	30, 147, 337, 400
TaqI	TCGA	2 cut(s)	16, 327
TasI	AATT	3 cut(s)	295, 473, 657
TatI	WGTACW	1 cut(s)	412
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	606
TscAI	CASTG	1 cut(s)	568
TseFI	GTSAC	2 cut(s)	436, 544
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	2 cut(s)	436, 544
TspDTI	ATGAA	3 cut(s)	79, 598, 663
TspGWI	ACGGA	2 cut(s)	139, 260
TspRI	CASTG	1 cut(s)	568
Van91I	CCANNNNNTGG	1 cut(s)	493
VpaK11BI	GGWCC	2 cut(s)	225, 509
XspI	CTAG	3 cut(s)	5, 137, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.