AT4G30260

Integral membrane Yip1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006639
Physical Location & Seq
Reverse (-)
14816575 .. 14819084
2510 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30260.1

Sequence Viewer

Length: 843 bp
ATGTCGCACAACGATACGATTCCGCTTTATCAATCATCTCAATCAGACATTGACGAGATTGAGAATATGATGAACGACAGTTTTCAATCAGGTCCCGGAACCGTGCTTCCTGCTCGACCACCGAGTCCGATCCGTCCGTCGATTCCCGTTTCATCCTCACCGTTCGTTCAATCCAATCTCCCACCGCTTCCACCGTCGTCTTCCTCCTCCACTCAGAAGGTGATGCCTGTTCCAGCTCCTCCACCACTTCCGTCAGCAGGTAACGAAGGTAACAAGAGTATTGGAGGTAGCGGATTCGGATCTCCGCCAAATACATTGACGGAGCCTGTTTGGGATACTGTGAAGCGTGATCTGTCACGGATCGTGAGTAATTTGAAGCTTGTGGTGTTTCCTAATCCGTATAGGGAAGATCCTGGGAAAGCACTTAGGGATTGGGATCTATGGGGACCTTTTTTCTTCATTGTGTTCTTGGGGCTTACTCTTTCGTGGTCTGCTTCCGTTAAGAAGTCTGAAGTATTTGCCGTGGCATTTGCACTACTTGCAGCTGGGGCAGTGATCCTCACACTAAATGTGCTGCTTCTGGGAGGACATATAATCTTTTTCCAAAGCCTAAGCCTTCTAGGCTACTGTCTATTTCCGCTAGACGTTGGAGCAGTGATCTGCATGTTGAAAGACAATGTGATACTGAAGATGGTCGTTGTGTCTGTGACTCTTGCCTGGAGCTCTTGGGCTGCTTATCCTTTCATGAGCGCCGCAGTGAACCCGAGAAGAAAAGCTCTCGCACTCTACCCGGTCTTCCTCATGTATGTCTCTGTTGGCTTCTTAATCATTGCCATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yip1

Protein Analysis

280

Amino Acids

30.22

Weight (kDa)

7.74

Isoelectric Point (pI)

65.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 142 - 274 3.3e-15 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 123
Acc36I ACCTGC 1 cut(s) 248
AciI CCGC 6 cut(s) 23, 185, 291, 305, 638, 753
AclWI GGATC 6 cut(s) 124, 307, 368, 404, 444, 550
AcuI CTGAAG 2 cut(s) 531, 707
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 4 cut(s) 86, 170, 376, 670
AjnI CCWGG 2 cut(s) 412, 716
AloI GAACNNNNNNTCC 2 cut(s) 91, 123
AluBI AGCT 5 cut(s) 236, 379, 545, 723, 776
AluI AGCT 5 cut(s) 236, 379, 545, 723, 776
Alw21I GWGCWC 1 cut(s) 725
Alw26I GTCTC 1 cut(s) 814
AlwI GGATC 6 cut(s) 124, 307, 368, 404, 444, 550
Ama87I CYCGRG 1 cut(s) 763
ApeKI GCWGC 3 cut(s) 542, 574, 731
AseI ATTAAT 1 cut(s) 837
AspLEI GCGC 1 cut(s) 752
AspS9I GGNCC 2 cut(s) 92, 446
AsuC2I CCSGG 2 cut(s) 96, 791
AsuHPI GGTGA 2 cut(s) 150, 232
AvaI CYCGRG 1 cut(s) 763
AvaII GGWCC 2 cut(s) 92, 446
BanII GRGCYC 1 cut(s) 725
BbsI GAAGAC 2 cut(s) 192, 787
Bbv12I GWGCWC 1 cut(s) 725
BbvI GCAGC 3 cut(s) 554, 561, 718
BccI CCATC 1 cut(s) 685
BceAI ACGGC 1 cut(s) 506
BciT130I CCWGG 2 cut(s) 414, 718
BciVI GTATCC 1 cut(s) 328
BcnI CCSGG 2 cut(s) 96, 791
BcoDI GTCTC 1 cut(s) 814
BfaI CTAG 2 cut(s) 620, 641
BfoI RGCGCY 1 cut(s) 753
BfuAI ACCTGC 1 cut(s) 248
BfuI GTATCC 1 cut(s) 328
BglI GCCNNNNNGGC 1 cut(s) 621
BisI GCNGC 4 cut(s) 543, 575, 732, 753
BlsI GCNGC 4 cut(s) 544, 576, 733, 754
Bme1390I CCNGG 4 cut(s) 96, 414, 718, 791
Bme18I GGWCC 2 cut(s) 92, 446
BmeT110I CYCGRG 1 cut(s) 763
BmgT120I GGNCC 2 cut(s) 92, 446
BmiI GGNNCC 4 cut(s) 94, 100, 324, 447
BmrFI CCNGG 4 cut(s) 96, 414, 718, 791
BmsI GCATC 1 cut(s) 213
BpiI GAAGAC 2 cut(s) 192, 787
BpmI CTGGAG 1 cut(s) 739
Bpu10I CCTNAGC 1 cut(s) 611
BpuMI CCSGG 2 cut(s) 96, 791
BsaBI GATNNNNATC 2 cut(s) 298, 435
BsaJI CCNNGG 2 cut(s) 413, 522
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse3DI GCAATG 1 cut(s) 828
Bse8I GATNNNNATC 2 cut(s) 298, 435
BseBI CCWGG 2 cut(s) 414, 718
BseDI CCNNGG 2 cut(s) 413, 522
BseGI GGATG 1 cut(s) 152
BseJI GATNNNNATC 2 cut(s) 298, 435
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 1 cut(s) 828
BseMII CTCAG 1 cut(s) 227
BseRI GAGGAG 2 cut(s) 196, 228
BseXI GCAGC 3 cut(s) 554, 561, 718
BseYI CCCAGC 1 cut(s) 545
BsiHKAI GWGCWC 1 cut(s) 725
BsiHKCI CYCGRG 1 cut(s) 763
BsiSI CCGG 2 cut(s) 96, 791
BslFI GGGAC 2 cut(s) 78, 459
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 814
BsmFI GGGAC 2 cut(s) 78, 459
BsoBI CYCGRG 1 cut(s) 763
Bsp1286I GDGCHC 1 cut(s) 725
Bsp143I GATC 8 cut(s) 129, 299, 349, 360, 409, 436, 555, 657
BspACI CCGC 6 cut(s) 23, 185, 291, 305, 638, 753
BspCNI CTCAG 1 cut(s) 226
BspHI TCATGA 1 cut(s) 744
BspLI GGNNCC 4 cut(s) 94, 100, 324, 447
BspMI ACCTGC 1 cut(s) 248
BspPI GGATC 6 cut(s) 124, 307, 368, 404, 444, 550
BsrDI GCAATG 1 cut(s) 828
BssECI CCNNGG 2 cut(s) 413, 522
BssMI GATC 8 cut(s) 129, 299, 349, 360, 409, 436, 555, 657
Bst2UI CCWGG 2 cut(s) 414, 718
Bst4CI ACNGT 6 cut(s) 80, 103, 162, 195, 340, 629
BstAPI GCANNNNNTGC 1 cut(s) 539
BstDEI CTNAG 3 cut(s) 213, 425, 611
BstDSI CCRYGG 1 cut(s) 522
BstF5I GGATG 1 cut(s) 152
BstH2I RGCGCY 1 cut(s) 753
BstHHI GCGC 1 cut(s) 752
BstKTI GATC 8 cut(s) 132, 302, 352, 363, 412, 439, 558, 660
BstMAI GTCTC 1 cut(s) 814
BstMBI GATC 8 cut(s) 129, 299, 349, 360, 409, 436, 555, 657
BstMWI GCNNNNNNNGC 3 cut(s) 539, 548, 621
BstNI CCWGG 2 cut(s) 414, 718
BstNSI RCATGY 1 cut(s) 667
BstSCI CCNGG 4 cut(s) 94, 412, 716, 789
BstV1I GCAGC 3 cut(s) 554, 561, 718
BstV2I GAAGAC 2 cut(s) 192, 787
BstX2I RGATCY 3 cut(s) 299, 409, 436
BstYI RGATCY 3 cut(s) 299, 409, 436
BsuI GTATCC 1 cut(s) 328
BtgI CCRYGG 1 cut(s) 522
BtsCI GGATG 1 cut(s) 152
BtsI GCAGTG 3 cut(s) 558, 660, 762
BtsIMutI CAGTG 3 cut(s) 558, 660, 762
BveI ACCTGC 1 cut(s) 248
CciI TCATGA 1 cut(s) 744
CfoI GCGC 1 cut(s) 752
Cfr13I GGNCC 2 cut(s) 92, 446
CviAII CATG 3 cut(s) 664, 745, 802
DdeI CTNAG 3 cut(s) 213, 425, 611
DpnI GATC 8 cut(s) 131, 301, 351, 362, 411, 438, 557, 659
DpnII GATC 8 cut(s) 129, 299, 349, 360, 409, 436, 555, 657
DrdI GACNNNNNNGTC 1 cut(s) 123
DseDI GACNNNNNNGTC 1 cut(s) 123
EciI GGCGGA 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 723
Eco24I GRGCYC 1 cut(s) 725
Eco47I GGWCC 2 cut(s) 92, 446
Eco53kI GAGCTC 1 cut(s) 723
Eco57I CTGAAG 2 cut(s) 531, 707
Eco88I CYCGRG 1 cut(s) 763
EcoICRI GAGCTC 1 cut(s) 723
EcoO109I RGGNCCY 2 cut(s) 92, 446
EcoRII CCWGG 2 cut(s) 412, 716
EcoT38I GRGCYC 1 cut(s) 725
FaeI CATG 3 cut(s) 667, 748, 805
FaiI YATR 9 cut(s) 68, 402, 442, 591, 593, 665, 746, 803, 807
FaqI GGGAC 2 cut(s) 78, 459
FatI CATG 3 cut(s) 663, 744, 801
Fnu4HI GCNGC 4 cut(s) 543, 575, 732, 753
FokI GGATG 1 cut(s) 139
FriOI GRGCYC 1 cut(s) 725
Fsp4HI GCNGC 4 cut(s) 543, 575, 732, 753
FspBI CTAG 2 cut(s) 620, 641
GlaI GCGC 1 cut(s) 751
GluI GCNGC 4 cut(s) 543, 575, 732, 753
GsaI CCCAGC 1 cut(s) 549
GsuI CTGGAG 1 cut(s) 739
HaeII RGCGCY 1 cut(s) 753
HapII CCGG 2 cut(s) 96, 791
HhaI GCGC 1 cut(s) 752
Hin1II CATG 3 cut(s) 667, 748, 805
Hin6I GCGC 1 cut(s) 750
HinP1I GCGC 1 cut(s) 750
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 5 cut(s) 19, 124, 142, 294, 709
HpaII CCGG 2 cut(s) 96, 791
HphI GGTGA 2 cut(s) 150, 232
Hpy166II GTNNAC 1 cut(s) 760
Hpy188I TCNGA 5 cut(s) 46, 129, 216, 299, 511
Hpy188III TCNNGA 2 cut(s) 364, 745
Hpy8I GTNNAC 1 cut(s) 760
Hpy99I CGWCG 2 cut(s) 142, 199
HpyAV CCTTC 3 cut(s) 211, 260, 626
HpyCH4III ACNGT 6 cut(s) 80, 103, 162, 195, 340, 629
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 3 cut(s) 533, 542, 663
HpyF10VI GCNNNNNNNGC 3 cut(s) 539, 548, 621
HpyF3I CTNAG 3 cut(s) 213, 425, 611
HpySE526I ACGT 1 cut(s) 645
Hsp92II CATG 3 cut(s) 667, 748, 805
HspAI GCGC 1 cut(s) 750
Kzo9I GATC 8 cut(s) 129, 299, 349, 360, 409, 436, 555, 657
LmnI GCTCC 4 cut(s) 241, 322, 650, 720
Lsp1109I GCAGC 3 cut(s) 554, 561, 718
LweI GCATC 1 cut(s) 213
MaeI CTAG 2 cut(s) 620, 641
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 4 cut(s) 260, 269, 354, 706
MalI GATC 8 cut(s) 131, 301, 351, 362, 411, 438, 557, 659
MboI GATC 8 cut(s) 129, 299, 349, 360, 409, 436, 555, 657
MboII GAAGA 6 cut(s) 192, 419, 448, 700, 780, 787
MflI RGATCY 3 cut(s) 299, 409, 436
MhlI GDGCHC 1 cut(s) 725
MluCI AATT 2 cut(s) 370, 838
MlyI GAGTC 2 cut(s) 133, 703
MmeI TCCRAC 1 cut(s) 628
MnlI CCTC 8 cut(s) 166, 214, 217, 249, 278, 569, 578, 809
MseI TTAA 3 cut(s) 501, 824, 837
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 2 cut(s) 96, 791
MspR9I CCNGG 4 cut(s) 96, 414, 718, 791
MvaI CCWGG 2 cut(s) 414, 718
MwoI GCNNNNNNNGC 3 cut(s) 539, 548, 621
NciI CCSGG 2 cut(s) 96, 791
NdeII GATC 8 cut(s) 129, 299, 349, 360, 409, 436, 555, 657
NlaIII CATG 3 cut(s) 667, 748, 805
NlaIV GGNNCC 4 cut(s) 94, 100, 324, 447
NmuCI GTSAC 2 cut(s) 354, 706
NspI RCATGY 1 cut(s) 667
PagI TCATGA 1 cut(s) 744
PfeI GAWTC 3 cut(s) 19, 142, 294
PfoI TCCNGGA 1 cut(s) 94
PkrI GCNGC 4 cut(s) 544, 576, 733, 754
PleI GAGTC 2 cut(s) 132, 703
PpsI GAGTC 2 cut(s) 132, 703
PpuMI RGGWCCY 2 cut(s) 92, 446
PshBI ATTAAT 1 cut(s) 837
Psp124BI GAGCTC 1 cut(s) 725
Psp5II RGGWCCY 2 cut(s) 92, 446
Psp6I CCWGG 2 cut(s) 412, 716
PspFI CCCAGC 1 cut(s) 545
PspGI CCWGG 2 cut(s) 412, 716
PspN4I GGNNCC 4 cut(s) 94, 100, 324, 447
PspPI GGNCC 2 cut(s) 92, 446
PspPPI RGGWCCY 2 cut(s) 92, 446
PsuI RGATCY 3 cut(s) 299, 409, 436
PvuII CAGCTG 1 cut(s) 545
SacI GAGCTC 1 cut(s) 725
SaqAI TTAA 3 cut(s) 501, 824, 837
SatI GCNGC 4 cut(s) 543, 575, 732, 753
Sau3AI GATC 8 cut(s) 129, 299, 349, 360, 409, 436, 555, 657
Sau96I GGNCC 2 cut(s) 92, 446
SchI GAGTC 2 cut(s) 133, 703
ScrFI CCNGG 4 cut(s) 96, 414, 718, 791
SduI GDGCHC 1 cut(s) 725
SfaNI GCATC 1 cut(s) 213
SinI GGWCC 2 cut(s) 92, 446
Sse9I AATT 2 cut(s) 370, 838
SsiI CCGC 6 cut(s) 23, 185, 291, 305, 638, 753
SspMI CTAG 2 cut(s) 620, 641
SstI GAGCTC 1 cut(s) 725
StyD4I CCNGG 4 cut(s) 94, 412, 716, 789
TaaI ACNGT 6 cut(s) 80, 103, 162, 195, 340, 629
TaiI ACGT 1 cut(s) 648
TaqI TCGA 2 cut(s) 115, 140
TasI AATT 2 cut(s) 370, 838
TauI GCSGC 1 cut(s) 755
TfiI GAWTC 3 cut(s) 19, 142, 294
Tru1I TTAA 3 cut(s) 501, 824, 837
Tru9I TTAA 3 cut(s) 501, 824, 837
TscAI CASTG 3 cut(s) 558, 660, 762
TseFI GTSAC 2 cut(s) 354, 706
TseI GCWGC 3 cut(s) 542, 574, 731
Tsp45I GTSAC 2 cut(s) 354, 706
TspDTI ATGAA 4 cut(s) 86, 141, 448, 733
TspGWI ACGGA 7 cut(s) 122, 126, 240, 335, 373, 387, 487
TspRI CASTG 3 cut(s) 558, 660, 762
VpaK11BI GGWCC 2 cut(s) 92, 446
VspI ATTAAT 1 cut(s) 837
XceI RCATGY 1 cut(s) 667
XspI CTAG 2 cut(s) 620, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.