Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006639

Physical Location & Seq

Genomic Coordinates Reverse (-)

18679586 .. 18680161

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTCGCACTCCTACGGCGAAAGCGACACCGTTCCCCTCCACCCTTCCTCCCAGTCCGACATCGACGAGATCGAAAACCTAATCAACGCCAGCGTCCAATCGGGCCCCACCACCGTCCTCCCCGCCAAGCCTCCCAGCCCGCCCCGCGCCTCCATCCCCGTCTCCTCCTCCCCCTTCATCCAATCCAACCTCCCCCAACCGGCCCCTCCCGTCTCCTCCAAGCCCAAGCCGCCGCTGCCGTCCGTCCCCGCCCCTCCCCCCGTCCCCTCCGCCGCCAACAACAACAACAACAACGGCCCCAACATCGCCGCTTCCGGGTTCGGGTCGCCGCCCAACACGCTAACGGAGCCCGTTTGGGACACCGTCAAGAGGGACTTGTCTCGGATCGTCAGCAATTTGAAGCTCGTCGTCTTCCCTAACCCCTACCGTGAGGACCCCGGAAAGGCTCTCAGGGATTGGGATCTATGGGGTCCTTTCTTCTTCATTGTCTTCTTGGGCCTCACTCTCTCCTGGTCTGCATCTGTCAAGAAGGTGATGATCCTTTCTTGCTTGCTTAAATTTTTCCAACTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

191

Amino Acids

20.55

Weight (kDa)

7.87

Isoelectric Point (pI)

70.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18840 AT4G30260 AT4G30260 AT4G30260
fragaria_vesca	FvH4_4g09840 FvH4_4g09840
malus_domestica	MD13G1256000.v1.1 MD13G1256300.v1.1
prunus_persica	Prupe.1G086600_v2.0.a1
pyrus_communis	pycom13g22680 pycom13g22700
rosa_chinensis	RchiOBHm_Chr4g0402611 RchiOBHm_Chr4g0439321
rosa_laevigata	RLG00000009061 RLG00000029975 RLG00000030249
rosa_multiflora	Rmu_sc0013411.1_g000013
rosa_roxburghii	Rroxscaffold_3G00237110 Rroxscaffold_5G00347330
rosa_rugosa	Rorug01G0138600.1 Rorug04G0037100
rosa_samantha	Rh4AG114600 Rh4BG107000 Rh4DG106900 Rh6BG193500
rosa_wichuraiana	Rw4G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	147
AclWI	GGATC	3 cut(s)	392, 468, 532
AcsI	RAATTY	1 cut(s)	557
AfiI	CCNNNNNNNGG	5 cut(s)	199, 315, 321, 369, 442
AgsI	TTSAA	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	509
AluBI	AGCT	1 cut(s)	403
AluI	AGCT	1 cut(s)	403
Alw26I	GTCTC	3 cut(s)	166, 217, 384
AlwI	GGATC	3 cut(s)	392, 468, 532
AoxI	GGCC	4 cut(s)	103, 201, 295, 496
ApaI	GGGCCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	235
ApoI	RAATTY	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	7 cut(s)	103, 104, 202, 296, 433, 470, 496
AsuC2I	CCSGG	2 cut(s)	316, 438
AsuHPI	GGTGA	1 cut(s)	544
AvaII	GGWCC	2 cut(s)	433, 470
BaeGI	GKGCMC	1 cut(s)	107
BanII	GRGCYC	2 cut(s)	107, 351
BbsI	GAAGAC	2 cut(s)	403, 481
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	3 cut(s)	31, 223, 310
BciT130I	CCWGG	1 cut(s)	511
BcnI	CCSGG	2 cut(s)	316, 438
BcoDI	GTCTC	3 cut(s)	166, 217, 384
BisI	GCNGC	6 cut(s)	230, 233, 236, 273, 309, 329
BlsI	GCNGC	6 cut(s)	231, 234, 237, 274, 310, 330
Bme1390I	CCNGG	3 cut(s)	316, 438, 511
Bme18I	GGWCC	2 cut(s)	433, 470
BmgT120I	GGNCC	7 cut(s)	103, 104, 202, 296, 433, 470, 496
BmiI	GGNNCC	7 cut(s)	105, 106, 204, 298, 348, 435, 471
BmrFI	CCNGG	3 cut(s)	316, 438, 511
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	527
BmuI	ACTGGG	1 cut(s)	46
BpiI	GAAGAC	2 cut(s)	403, 481
BpuMI	CCSGG	2 cut(s)	316, 438
BsaBI	GATNNNNATC	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	436
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	5 cut(s)	199, 315, 321, 369, 442
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	511
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	2 cut(s)	153, 177
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	5 cut(s)	199, 315, 321, 369, 442
BseMII	CTCAG	1 cut(s)	463
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	3 cut(s)	154, 157, 205
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	222
BseYI	CCCAGC	1 cut(s)	134
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	4 cut(s)	105, 203, 297, 498
BsiSI	CCGG	3 cut(s)	200, 315, 438
BslFI	GGGAC	4 cut(s)	230, 248, 371, 386
BslI	CCNNNNNNNGG	5 cut(s)	199, 315, 321, 369, 442
BsmAI	GTCTC	3 cut(s)	166, 217, 384
BsmBI	CGTCTC	2 cut(s)	166, 217
BsmFI	GGGAC	4 cut(s)	230, 248, 371, 386
BsnI	GGCC	4 cut(s)	105, 203, 297, 498
Bsp120I	GGGCCC	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	107, 351
Bsp143I	GATC	4 cut(s)	69, 384, 460, 537
BspANI	GGCC	4 cut(s)	105, 203, 297, 498
BspCNI	CTCAG	1 cut(s)	462
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	7 cut(s)	105, 106, 204, 298, 348, 435, 471
BspPI	GGATC	3 cut(s)	392, 468, 532
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	4 cut(s)	69, 384, 460, 537
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	4 cut(s)	31, 115, 364, 428
BstC8I	GCNNGC	3 cut(s)	91, 140, 551
BstDEI	CTNAG	1 cut(s)	449
BstF5I	GGATG	2 cut(s)	153, 177
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	4 cut(s)	72, 387, 463, 540
BstMAI	GTCTC	3 cut(s)	166, 217, 384
BstMBI	GATC	4 cut(s)	69, 384, 460, 537
BstMWI	GCNNNNNNNGC	5 cut(s)	144, 229, 235, 337, 346
BstNI	CCWGG	1 cut(s)	511
BstSCI	CCNGG	3 cut(s)	314, 436, 509
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	222
BstV2I	GAAGAC	2 cut(s)	403, 481
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	4 cut(s)	105, 203, 297, 498
BtgZI	GCGATG	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	153, 177
Cac8I	GCNNGC	3 cut(s)	91, 140, 551
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	7 cut(s)	103, 104, 202, 296, 433, 470, 496
CseI	GACGC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	4 cut(s)	71, 386, 462, 539
DpnII	GATC	4 cut(s)	69, 384, 460, 537
EciI	GGCGGA	1 cut(s)	259
Eco24I	GRGCYC	2 cut(s)	107, 351
Eco47I	GGWCC	2 cut(s)	433, 470
EcoO109I	RGGNCCY	3 cut(s)	104, 433, 470
EcoRII	CCWGG	1 cut(s)	509
EcoT38I	GRGCYC	2 cut(s)	107, 351
Esp3I	CGTCTC	2 cut(s)	166, 217
FaiI	YATR	1 cut(s)	466
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	4 cut(s)	230, 248, 371, 386
FauI	CCCGC	4 cut(s)	130, 147, 152, 256
Fnu4HI	GCNGC	6 cut(s)	230, 233, 236, 273, 309, 329
FokI	GGATG	2 cut(s)	140, 164
FriOI	GRGCYC	2 cut(s)	107, 351
Fsp4HI	GCNGC	6 cut(s)	230, 233, 236, 273, 309, 329
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	6 cut(s)	230, 233, 236, 273, 309, 329
GsaI	CCCAGC	1 cut(s)	138
HaeIII	GGCC	4 cut(s)	105, 203, 297, 498
HapII	CCGG	3 cut(s)	200, 315, 438
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HpaII	CCGG	3 cut(s)	200, 315, 438
HphI	GGTGA	1 cut(s)	544
Hpy188I	TCNGA	2 cut(s)	58, 384
Hpy188III	TCNNGA	2 cut(s)	367, 526
Hpy99I	CGWCG	2 cut(s)	68, 410
HpyAV	CCTTC	3 cut(s)	54, 184, 523
HpyCH4III	ACNGT	4 cut(s)	31, 115, 364, 428
HpyCH4V	TGCA	1 cut(s)	518
HpyF10VI	GCNNNNNNNGC	5 cut(s)	144, 229, 235, 337, 346
HpyF3I	CTNAG	1 cut(s)	449
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	69, 384, 460, 537
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	9 cut(s)	65, 103, 148, 213, 328, 436, 451, 496, 523
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	1 cut(s)	527
MalI	GATC	4 cut(s)	71, 386, 462, 539
MboI	GATC	4 cut(s)	69, 384, 460, 537
MboII	GAAGA	4 cut(s)	403, 469, 472, 481
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	2 cut(s)	107, 351
MluCI	AATT	2 cut(s)	394, 557
MmeI	TCCRAC	2 cut(s)	81, 210
MseI	TTAA	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	235
MspI	CCGG	3 cut(s)	200, 315, 438
MspR9I	CCNGG	3 cut(s)	316, 438, 511
MvaI	CCWGG	1 cut(s)	511
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	5 cut(s)	144, 229, 235, 337, 346
NciI	CCSGG	2 cut(s)	316, 438
NdeII	GATC	4 cut(s)	69, 384, 460, 537
NlaIV	GGNNCC	7 cut(s)	105, 106, 204, 298, 348, 435, 471
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 69
PflFI	GACNNNGTC	1 cut(s)	362
PkrI	GCNGC	6 cut(s)	231, 234, 237, 274, 310, 330
PpuMI	RGGWCCY	2 cut(s)	433, 470
Psp5II	RGGWCCY	2 cut(s)	433, 470
Psp6I	CCWGG	1 cut(s)	509
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	509
PspN4I	GGNNCC	7 cut(s)	105, 106, 204, 298, 348, 435, 471
PspOMI	GGGCCC	1 cut(s)	103
PspPI	GGNCC	7 cut(s)	103, 104, 202, 296, 433, 470, 496
PspPPI	RGGWCCY	2 cut(s)	433, 470
PsuI	RGATCY	1 cut(s)	460
PsyI	GACNNNGTC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	6 cut(s)	230, 233, 236, 273, 309, 329
Sau3AI	GATC	4 cut(s)	69, 384, 460, 537
Sau96I	GGNCC	7 cut(s)	103, 104, 202, 296, 433, 470, 496
ScrFI	CCNGG	3 cut(s)	316, 438, 511
SduI	GDGCHC	2 cut(s)	107, 351
SetI	ASST	4 cut(s)	81, 192, 405, 534
SfaNI	GCATC	1 cut(s)	527
SinI	GGWCC	2 cut(s)	433, 470
Sse9I	AATT	2 cut(s)	394, 557
StyD4I	CCNGG	3 cut(s)	314, 436, 509
TaaI	ACNGT	4 cut(s)	31, 115, 364, 428
TaqI	TCGA	2 cut(s)	63, 72
TasI	AATT	2 cut(s)	394, 557
TauI	GCSGC	5 cut(s)	232, 235, 275, 311, 331
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TseI	GCWGC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	166, 472
TspGWI	ACGGA	2 cut(s)	232, 359
Tth111I	GACNNNGTC	1 cut(s)	362
VpaK11BI	GGWCC	2 cut(s)	433, 470
XapI	RAATTY	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.