Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006639

Physical Location & Seq

Genomic Coordinates Forward (+)

45806915 .. 45808757

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009061

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTCGCACTCCTACAGCGAAAGCGACACCGTTCCCCTCCACCCTTCCTCCCAGTCCGACATCGACGAGATCGAAAACCTAATCAACGCCAGCGTCCAATCCGGCCCCACCACCGTCCTCCCCGCCAAGCCCCCCAGCCCCCCCCGCGCCTCCATCCCCGTCTCCTCCTCCCCCTTCATCCAATCCAACCTCCCCCAACCCGCCCCTCCCGCCTCCTCCAAGCCCAAGCCGCCGCCGCCGTCCGTCCCCGCCCCTCCCCCCGTCCCCTCCGCCGCCAACAACAACAACGGCCCCACCAACATCGCCGCTTCCGGCTTCGGGTCCCCGCCCAACACGCTAACGGAGCCCGTTTGGGACACCGTCAAGAGGGACTTGTCTCGGATCGTCAGCAATTTGAAGCTCGTCGTCTTCCCTAACCCCTACCGTGAGGACCCCGGAAAGGCTCTCAGGGATTGGGATCTATGGGGTCCTTTCTTCTTCATTGTGTTCTTGGGCCTCACTCTGTCTTGGTCTGCATCTGTCAAGAAGTCTGAAGTTTTCGCTGTTGCATTTGCTGTACTTGCTGCTGGTGCTGTGATTTTGACATTGAATGTACTCCTACTGGGGGGACACATAATTTTCTTTCAGAGCCTAAGTCTTCTTGGTTATTGCTTATTCCCTCTGGATGTTGGAGCTTTAATCTGTATGGTGAAGGACAATGTGATATTGAAGGTGGTTGTAGTAAGTATTACACTGGCTTGGAGTTCTTGGTCTGCATATCCTTTCATGAGTTCAGCAGTCAACCCCAGGAGAAAAGCTCTAGCACTTTACCCAGTTTTCTTGCTGTATGTATCTGTTGGTTTTCTTATCATCGCCATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

288

Amino Acids

30.7

Weight (kDa)

7.76

Isoelectric Point (pI)

62.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yip1	PF04893	149 - 281	4.8e-15	Yip1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18840 AT4G30260 AT4G30260 AT4G30260
fragaria_vesca	FvH4_4g09840 FvH4_4g09840
malus_domestica	MD13G1256000.v1.1 MD13G1256300.v1.1
prunus_persica	Prupe.1G086600_v2.0.a1
pyrus_communis	pycom13g22680 pycom13g22700
rosa_chinensis	RchiOBHm_Chr4g0402611 RchiOBHm_Chr4g0439321
rosa_laevigata	RLG00000009061 RLG00000029975 RLG00000030249
rosa_multiflora	Rmu_sc0013411.1_g000013
rosa_roxburghii	Rroxscaffold_3G00237110 Rroxscaffold_5G00347330
rosa_rugosa	Rorug01G0138600.1 Rorug04G0037100
rosa_samantha	Rh4AG114600 Rh4BG107000 Rh4DG106900 Rh6BG193500
rosa_wichuraiana	Rw4G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	147
AclWI	GGATC	2 cut(s)	389, 465
AcuI	CTGAAG	1 cut(s)	552
AfaI	GTAC	2 cut(s)	558, 594
AfiI	CCNNNNNNNGG	4 cut(s)	318, 366, 439, 604
AgsI	TTSAA	3 cut(s)	397, 589, 709
AjnI	CCWGG	1 cut(s)	785
AluBI	AGCT	3 cut(s)	400, 674, 797
AluI	AGCT	3 cut(s)	400, 674, 797
Alw26I	GTCTC	2 cut(s)	166, 381
AlwI	GGATC	2 cut(s)	389, 465
AoxI	GGCC	3 cut(s)	103, 289, 493
ApeKI	GCWGC	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	6 cut(s)	104, 290, 321, 430, 467, 493
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	1 cut(s)	700
AvaII	GGWCC	3 cut(s)	321, 430, 467
BanII	GRGCYC	1 cut(s)	348
BbsI	GAAGAC	2 cut(s)	400, 629
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	2 cut(s)	223, 304
BciT130I	CCWGG	1 cut(s)	787
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	166, 381
BfaI	CTAG	1 cut(s)	800
BfmI	CTRYAG	1 cut(s)	13
BisI	GCNGC	6 cut(s)	230, 233, 236, 273, 306, 564
BlsI	GCNGC	6 cut(s)	231, 234, 237, 274, 307, 565
Bme1390I	CCNGG	2 cut(s)	435, 787
Bme18I	GGWCC	3 cut(s)	321, 430, 467
BmgT120I	GGNCC	6 cut(s)	104, 290, 321, 430, 467, 493
BmiI	GGNNCC	7 cut(s)	106, 292, 322, 323, 345, 432, 468
BmrFI	CCNGG	2 cut(s)	435, 787
BmrI	ACTGGG	3 cut(s)	46, 611, 806
BmsI	GCATC	1 cut(s)	524
BmuI	ACTGGG	3 cut(s)	46, 611, 806
BpiI	GAAGAC	2 cut(s)	400, 629
BplI	GAGNNNNNCTC	2 cut(s)	781, 813
BpuMI	CCSGG	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	433, 785
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	4 cut(s)	318, 366, 439, 604
Bse1I	ACTGG	4 cut(s)	52, 606, 738, 812
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	787
BseDI	CCNNGG	2 cut(s)	433, 785
BseGI	GGATG	3 cut(s)	153, 177, 670
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	4 cut(s)	318, 366, 439, 604
BseMII	CTCAG	1 cut(s)	460
BseNI	ACTGG	4 cut(s)	52, 606, 738, 812
BseRI	GAGGAG	3 cut(s)	154, 157, 205
BseXI	GCAGC	1 cut(s)	550
BseYI	CCCAGC	1 cut(s)	134
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	105, 291, 495
BsiSI	CCGG	3 cut(s)	102, 312, 435
BslFI	GGGAC	6 cut(s)	230, 248, 307, 368, 383, 621
BslI	CCNNNNNNNGG	4 cut(s)	318, 366, 439, 604
BsmAI	GTCTC	2 cut(s)	166, 381
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	6 cut(s)	230, 248, 307, 368, 383, 621
BsnI	GGCC	3 cut(s)	105, 291, 495
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	69, 381, 457
BspANI	GGCC	3 cut(s)	105, 291, 495
BspCNI	CTCAG	1 cut(s)	459
BspFNI	CGCG	1 cut(s)	147
BspHI	TCATGA	1 cut(s)	765
BspLI	GGNNCC	7 cut(s)	106, 292, 322, 323, 345, 432, 468
BspPI	GGATC	2 cut(s)	389, 465
BsrI	ACTGG	4 cut(s)	52, 606, 738, 812
BssECI	CCNNGG	2 cut(s)	433, 785
BssMI	GATC	3 cut(s)	69, 381, 457
Bst2UI	CCWGG	1 cut(s)	787
Bst4CI	ACNGT	4 cut(s)	31, 115, 361, 425
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	446, 632
BstF5I	GGATG	3 cut(s)	153, 177, 670
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	3 cut(s)	72, 384, 460
BstMAI	GTCTC	2 cut(s)	166, 381
BstMBI	GATC	3 cut(s)	69, 381, 457
BstMWI	GCNNNNNNNGC	8 cut(s)	144, 209, 229, 235, 334, 343, 560, 569
BstNI	CCWGG	1 cut(s)	787
BstSCI	CCNGG	2 cut(s)	433, 785
BstSFI	CTRYAG	1 cut(s)	13
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	550
BstV2I	GAAGAC	2 cut(s)	400, 629
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	3 cut(s)	105, 291, 495
BtgZI	GCGATG	2 cut(s)	286, 835
BtsCI	GGATG	3 cut(s)	153, 177, 670
BtsIMutI	CAGTG	1 cut(s)	731
Cac8I	GCNNGC	1 cut(s)	91
CciI	TCATGA	1 cut(s)	765
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	6 cut(s)	104, 290, 321, 430, 467, 493
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	557, 593
CviAII	CATG	1 cut(s)	766
CviQI	GTAC	2 cut(s)	557, 593
DdeI	CTNAG	2 cut(s)	446, 632
DpnI	GATC	3 cut(s)	71, 383, 459
DpnII	GATC	3 cut(s)	69, 381, 457
EciI	GGCGGA	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	348
Eco47I	GGWCC	3 cut(s)	321, 430, 467
Eco57I	CTGAAG	1 cut(s)	552
EcoO109I	RGGNCCY	3 cut(s)	321, 430, 467
EcoRII	CCWGG	1 cut(s)	785
EcoT38I	GRGCYC	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	1 cut(s)	769
FaiI	YATR	6 cut(s)	463, 614, 686, 757, 767, 828
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	6 cut(s)	230, 248, 307, 368, 383, 621
FatI	CATG	1 cut(s)	765
FauI	CCCGC	6 cut(s)	130, 152, 208, 217, 256, 333
Fnu4HI	GCNGC	6 cut(s)	230, 233, 236, 273, 306, 564
FokI	GGATG	3 cut(s)	140, 164, 677
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	6 cut(s)	230, 233, 236, 273, 306, 564
FspBI	CTAG	1 cut(s)	800
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	6 cut(s)	230, 233, 236, 273, 306, 564
GsaI	CCCAGC	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	105, 291, 495
HapII	CCGG	3 cut(s)	102, 312, 435
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	1 cut(s)	769
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HpaII	CCGG	3 cut(s)	102, 312, 435
HphI	GGTGA	1 cut(s)	700
Hpy166II	GTNNAC	1 cut(s)	781
Hpy188I	TCNGA	4 cut(s)	58, 381, 532, 627
Hpy188III	TCNNGA	4 cut(s)	364, 523, 662, 766
Hpy8I	GTNNAC	1 cut(s)	781
Hpy99I	CGWCG	2 cut(s)	68, 407
HpyAV	CCTTC	4 cut(s)	54, 184, 685, 703
HpyCH4III	ACNGT	4 cut(s)	31, 115, 361, 425
HpyCH4V	TGCA	3 cut(s)	515, 548, 755
HpyF10VI	GCNNNNNNNGC	8 cut(s)	144, 209, 229, 235, 334, 343, 560, 569
HpyF3I	CTNAG	2 cut(s)	446, 632
Hsp92II	CATG	1 cut(s)	769
HspAI	GCGC	1 cut(s)	147
KflI	GGGWCCC	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	69, 381, 457
LmnI	GCTCC	2 cut(s)	343, 671
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	1 cut(s)	524
MaeI	CTAG	1 cut(s)	800
MalI	GATC	3 cut(s)	71, 383, 459
MboI	GATC	3 cut(s)	69, 381, 457
MboII	GAAGA	4 cut(s)	400, 466, 469, 629
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	2 cut(s)	391, 615
MmeI	TCCRAC	3 cut(s)	81, 210, 649
MseI	TTAA	2 cut(s)	677, 862
MspI	CCGG	3 cut(s)	102, 312, 435
MspR9I	CCNGG	2 cut(s)	435, 787
MvaI	CCWGG	1 cut(s)	787
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	8 cut(s)	144, 209, 229, 235, 334, 343, 560, 569
NciI	CCSGG	1 cut(s)	435
NdeII	GATC	3 cut(s)	69, 381, 457
NlaIII	CATG	1 cut(s)	769
NlaIV	GGNNCC	7 cut(s)	106, 292, 322, 323, 345, 432, 468
PagI	TCATGA	1 cut(s)	765
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	6 cut(s)	231, 234, 237, 274, 307, 565
PpuMI	RGGWCCY	3 cut(s)	321, 430, 467
Psp5II	RGGWCCY	3 cut(s)	321, 430, 467
Psp6I	CCWGG	1 cut(s)	785
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	785
PspN4I	GGNNCC	7 cut(s)	106, 292, 322, 323, 345, 432, 468
PspPI	GGNCC	6 cut(s)	104, 290, 321, 430, 467, 493
PspPPI	RGGWCCY	3 cut(s)	321, 430, 467
PsuI	RGATCY	1 cut(s)	457
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	2 cut(s)	558, 594
RsaNI	GTAC	2 cut(s)	557, 593
SaqAI	TTAA	2 cut(s)	677, 862
SatI	GCNGC	6 cut(s)	230, 233, 236, 273, 306, 564
Sau3AI	GATC	3 cut(s)	69, 381, 457
Sau96I	GGNCC	6 cut(s)	104, 290, 321, 430, 467, 493
ScrFI	CCNGG	2 cut(s)	435, 787
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	6 cut(s)	81, 192, 402, 676, 714, 799
SfaNI	GCATC	1 cut(s)	524
SfcI	CTRYAG	1 cut(s)	13
SinI	GGWCC	3 cut(s)	321, 430, 467
Sse9I	AATT	2 cut(s)	391, 615
SspMI	CTAG	1 cut(s)	800
StyD4I	CCNGG	2 cut(s)	433, 785
TaaI	ACNGT	4 cut(s)	31, 115, 361, 425
TaqI	TCGA	2 cut(s)	63, 72
TasI	AATT	2 cut(s)	391, 615
TatI	WGTACW	2 cut(s)	556, 592
TauI	GCSGC	5 cut(s)	232, 235, 238, 275, 308
Tru1I	TTAA	2 cut(s)	677, 862
Tru9I	TTAA	2 cut(s)	677, 862
TscAI	CASTG	1 cut(s)	738
TseI	GCWGC	1 cut(s)	563
TspDTI	ATGAA	3 cut(s)	166, 469, 754
TspGWI	ACGGA	2 cut(s)	232, 356
TspRI	CASTG	1 cut(s)	738
Tth111I	GACNNNGTC	1 cut(s)	359
VpaK11BI	GGWCC	3 cut(s)	321, 430, 467
XspI	CTAG	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.