Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006639

Physical Location & Seq

Genomic Coordinates Reverse (-)

16454830 .. 16455556

Gene Structure 727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG106900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCGCACTCCTACGGCGAAGGCGACACCGTTCCCCTCCACCCTTCCTCCCAGTCCGACATCGACGAGATCGAAAACCTAATCAACGCCAGCGTCCAGTCCGGCCCCACCACCGTCCTCCCCGCCAAGCCTCCCAGCCCCCCACGCGCCTCCATCCCCGTCTCCTCCTCCTCCCCCTTCATCCAATCCAACCTCCCCCAACCGGCCCCTCCCGCCTCCTCCAAGCCCAAGCCTGCTCTGCCGCCGTCTGTCCCCGCCCCTCCCCCCGTCCCCTCCGCCGCCAACAACAACAACATCGCCGCTTCCGGCTTCGGCTCCCCGTCCAACACCCTAACGGAGCCCGTTTGGGACACCGTCAAGAGGGACCTGTCTCGGATCGTCAGCAATTTGAAGCTCGTCGTCTTCCCTAACCCCTACCGTGAGGACCCCGGAAAGGCTCTCAGGGATTGGGATCTATGGGGTCCTTTCTTCTTCATTGTGTTCTTGGGCCTCACTCTCTCCTGGTCTGCATCTGTCAAGAAGTCTGAAGTTTTCGCTGTTGCATTTGCTGTACTTGCTGCTGGTGCTGTGATTTTGACATTGAATGTACTCCTACTGGTAATAACTCCTCTCTCCCTCTTTTACTCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

210

Amino Acids

22.28

Weight (kDa)

6.08

Isoelectric Point (pI)

66.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18840 AT4G30260 AT4G30260 AT4G30260
fragaria_vesca	FvH4_4g09840 FvH4_4g09840
malus_domestica	MD13G1256000.v1.1 MD13G1256300.v1.1
prunus_persica	Prupe.1G086600_v2.0.a1
pyrus_communis	pycom13g22680 pycom13g22700
rosa_chinensis	RchiOBHm_Chr4g0402611 RchiOBHm_Chr4g0439321
rosa_laevigata	RLG00000009061 RLG00000029975 RLG00000030249
rosa_multiflora	Rmu_sc0013411.1_g000013
rosa_roxburghii	Rroxscaffold_3G00237110 Rroxscaffold_5G00347330
rosa_rugosa	Rorug01G0138600.1 Rorug04G0037100
rosa_samantha	Rh4AG114600 Rh4BG107000 Rh4DG106900 Rh6BG193500
rosa_wichuraiana	Rw4G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	147
AciI	CCGC	7 cut(s)	123, 213, 242, 255, 276, 279, 300
AclWI	GGATC	2 cut(s)	383, 459
AcuI	CTGAAG	1 cut(s)	546
AfaI	GTAC	2 cut(s)	552, 588
AfiI	CCNNNNNNNGG	3 cut(s)	202, 360, 433
AgsI	TTSAA	2 cut(s)	391, 583
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
Alw26I	GTCTC	2 cut(s)	166, 375
AlwI	GGATC	2 cut(s)	383, 459
AoxI	GGCC	3 cut(s)	103, 204, 487
ApeKI	GCWGC	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	6 cut(s)	104, 205, 364, 424, 461, 487
AsuC2I	CCSGG	1 cut(s)	429
AvaII	GGWCC	3 cut(s)	364, 424, 461
BanII	GRGCYC	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	2 cut(s)	31, 229
BciT130I	CCWGG	1 cut(s)	502
BcnI	CCSGG	1 cut(s)	429
BcoDI	GTCTC	2 cut(s)	166, 375
BisI	GCNGC	4 cut(s)	242, 279, 300, 558
BlsI	GCNGC	4 cut(s)	243, 280, 301, 559
Bme1390I	CCNGG	2 cut(s)	429, 502
Bme18I	GGWCC	3 cut(s)	364, 424, 461
BmgT120I	GGNCC	6 cut(s)	104, 205, 364, 424, 461, 487
BmiI	GGNNCC	7 cut(s)	106, 207, 316, 339, 365, 426, 462
BmrFI	CCNGG	2 cut(s)	429, 502
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	518
BmuI	ACTGGG	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	394
BpuMI	CCSGG	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 360, 433
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	3 cut(s)	52, 97, 600
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	2 cut(s)	153, 180
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	3 cut(s)	202, 360, 433
BseMII	CTCAG	1 cut(s)	454
BseNI	ACTGG	3 cut(s)	52, 97, 600
BseRI	GAGGAG	5 cut(s)	154, 157, 160, 208, 597
BseXI	GCAGC	1 cut(s)	544
BseYI	CCCAGC	1 cut(s)	134
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	105, 206, 489
BsiSI	CCGG	4 cut(s)	102, 203, 306, 429
BslFI	GGGAC	4 cut(s)	236, 254, 362, 377
BslI	CCNNNNNNNGG	3 cut(s)	202, 360, 433
BsmAI	GTCTC	2 cut(s)	166, 375
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	4 cut(s)	236, 254, 362, 377
BsnI	GGCC	3 cut(s)	105, 206, 489
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	69, 375, 451
BspACI	CCGC	7 cut(s)	123, 213, 242, 255, 276, 279, 300
BspANI	GGCC	3 cut(s)	105, 206, 489
BspCNI	CTCAG	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	7 cut(s)	106, 207, 316, 339, 365, 426, 462
BspPI	GGATC	2 cut(s)	383, 459
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	3 cut(s)	52, 97, 600
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	3 cut(s)	69, 375, 451
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	4 cut(s)	31, 115, 355, 419
BstC8I	GCNNGC	2 cut(s)	91, 234
BstDEI	CTNAG	1 cut(s)	440
BstF5I	GGATG	2 cut(s)	153, 180
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	3 cut(s)	72, 378, 454
BstMAI	GTCTC	2 cut(s)	166, 375
BstMBI	GATC	3 cut(s)	69, 375, 451
BstMWI	GCNNNNNNNGC	5 cut(s)	144, 212, 238, 554, 563
BstNI	CCWGG	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	427, 500
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	544
BstV2I	GAAGAC	1 cut(s)	394
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	3 cut(s)	105, 206, 489
BtgZI	GCGATG	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	153, 180
Cac8I	GCNNGC	2 cut(s)	91, 234
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	6 cut(s)	104, 205, 364, 424, 461, 487
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	551, 587
CviQI	GTAC	2 cut(s)	551, 587
DdeI	CTNAG	1 cut(s)	440
DpnI	GATC	3 cut(s)	71, 377, 453
DpnII	GATC	3 cut(s)	69, 375, 451
EciI	GGCGGA	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	342
Eco47I	GGWCC	3 cut(s)	364, 424, 461
Eco57I	CTGAAG	1 cut(s)	546
EcoO109I	RGGNCCY	3 cut(s)	364, 424, 461
EcoRII	CCWGG	1 cut(s)	500
EcoT38I	GRGCYC	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	166
FaiI	YATR	1 cut(s)	457
FaqI	GGGAC	4 cut(s)	236, 254, 362, 377
FauI	CCCGC	3 cut(s)	130, 220, 262
Fnu4HI	GCNGC	4 cut(s)	242, 279, 300, 558
FokI	GGATG	2 cut(s)	140, 167
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	4 cut(s)	242, 279, 300, 558
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	4 cut(s)	242, 279, 300, 558
GsaI	CCCAGC	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	105, 206, 489
HapII	CCGG	4 cut(s)	102, 203, 306, 429
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HpaII	CCGG	4 cut(s)	102, 203, 306, 429
Hpy188I	TCNGA	3 cut(s)	58, 375, 526
Hpy188III	TCNNGA	2 cut(s)	358, 517
Hpy99I	CGWCG	2 cut(s)	68, 401
HpyAV	CCTTC	3 cut(s)	14, 54, 187
HpyCH4III	ACNGT	4 cut(s)	31, 115, 355, 419
HpyCH4V	TGCA	2 cut(s)	509, 542
HpyF10VI	GCNNNNNNNGC	5 cut(s)	144, 212, 238, 554, 563
HpyF3I	CTNAG	1 cut(s)	440
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	69, 375, 451
LmnI	GCTCC	2 cut(s)	320, 337
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	1 cut(s)	518
MalI	GATC	3 cut(s)	71, 377, 453
MboI	GATC	3 cut(s)	69, 375, 451
MboII	GAAGA	3 cut(s)	394, 460, 463
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	1 cut(s)	385
MmeI	TCCRAC	3 cut(s)	81, 213, 348
MspI	CCGG	4 cut(s)	102, 203, 306, 429
MspR9I	CCNGG	2 cut(s)	429, 502
MvaI	CCWGG	1 cut(s)	502
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	5 cut(s)	144, 212, 238, 554, 563
NciI	CCSGG	1 cut(s)	429
NdeII	GATC	3 cut(s)	69, 375, 451
NlaIV	GGNNCC	7 cut(s)	106, 207, 316, 339, 365, 426, 462
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 69
PflFI	GACNNNGTC	1 cut(s)	353
PkrI	GCNGC	4 cut(s)	243, 280, 301, 559
PpuMI	RGGWCCY	3 cut(s)	364, 424, 461
Psp5II	RGGWCCY	3 cut(s)	364, 424, 461
Psp6I	CCWGG	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	7 cut(s)	106, 207, 316, 339, 365, 426, 462
PspPI	GGNCC	6 cut(s)	104, 205, 364, 424, 461, 487
PspPPI	RGGWCCY	3 cut(s)	364, 424, 461
PsuI	RGATCY	1 cut(s)	451
PsyI	GACNNNGTC	1 cut(s)	353
RsaI	GTAC	2 cut(s)	552, 588
RsaNI	GTAC	2 cut(s)	551, 587
SatI	GCNGC	4 cut(s)	242, 279, 300, 558
Sau3AI	GATC	3 cut(s)	69, 375, 451
Sau96I	GGNCC	6 cut(s)	104, 205, 364, 424, 461, 487
ScrFI	CCNGG	2 cut(s)	429, 502
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	4 cut(s)	81, 195, 369, 396
SfaNI	GCATC	1 cut(s)	518
SinI	GGWCC	3 cut(s)	364, 424, 461
Sse9I	AATT	1 cut(s)	385
SsiI	CCGC	7 cut(s)	123, 213, 242, 255, 276, 279, 300
StyD4I	CCNGG	2 cut(s)	427, 500
TaaI	ACNGT	4 cut(s)	31, 115, 355, 419
TaqI	TCGA	2 cut(s)	63, 72
TasI	AATT	1 cut(s)	385
TatI	WGTACW	2 cut(s)	550, 586
TauI	GCSGC	3 cut(s)	244, 281, 302
TseI	GCWGC	1 cut(s)	557
TspDTI	ATGAA	2 cut(s)	169, 463
TspGWI	ACGGA	1 cut(s)	350
Tth111I	GACNNNGTC	1 cut(s)	353
VpaK11BI	GGWCC	3 cut(s)	364, 424, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.