Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006639

Physical Location & Seq

Genomic Coordinates Forward (+)

20416027 .. 20417568

Gene Structure 1542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g22680.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCTCACTCCGAACGCGACACCGTCCCCCTCCACCCCTCCTCTCAATCCGACATCGACGAGATCGAAAACCTAATCAACGCCAGCGTCCAATCGGGCCCCACCAACGTCCTCCCGGCCAAACCCCCCAGTCCTCCCCGCGCCTCCATTCCCGTCTCATCATCCCCTTTCATCCCATCAAACCTCCCACCCCCAGCCCCCTCCTCCGCCGCAAAGAAGCCTTCCTCCGTCCCCGCCCCACCTCCCATTCCCTCCGCAACCAACGGCCCCAGTATCTTCCCCTCCGGGTTCGGCTCCCCGCCCAACACCCTAACCGAGCCCGTTTGGGACACCGTGAAGCGCGACTTGTCGAGAATCGTGAGCAATTTGAAGCTTGTGGTGTTCCCCAACCCCTATCGTGAGGATCCGGGAAAGGCCTTGAGGGATTGGGATCTCTGGGGACCTTTCTTCTTCATTGTATTCTTGGGTCTCACACTTTCCTGGTCTGCATCTGTTAAAAAGTCAGAGGTTTTTGCTGTTGCTTTTGCTGTGCTTGCTGCTGGTGCTGTGATTCTGACACTGAATGTACTCCTACTGGGTGGACACATAATATTCTTCCAGAGCCTTAGTCTTCTCGGTTATTGCTTATTTCCTCTGGACGTTGGAGCTCTGATATGTATGGTGAAGGATTATGTGATATTGAAGGTGGTGGTGGTAAGCGTAACACTGGCTTGGAGTTCATGGGCTGCATATCCTTTCATGAGTTCAGCGGTCAACCCCAGGAGAAAAGCCCTTGCACTTTACCCTGTTTTCCTATTGTATGTATCCATCGGTTTCCTTATTATCGCCATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

279

Amino Acids

29.85

Weight (kDa)

8.52

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18840 AT4G30260 AT4G30260 AT4G30260
fragaria_vesca	FvH4_4g09840 FvH4_4g09840
malus_domestica	MD13G1256000.v1.1 MD13G1256300.v1.1
prunus_persica	Prupe.1G086600_v2.0.a1
pyrus_communis	pycom13g22680 pycom13g22700
rosa_chinensis	RchiOBHm_Chr4g0402611 RchiOBHm_Chr4g0439321
rosa_laevigata	RLG00000009061 RLG00000029975 RLG00000030249
rosa_multiflora	Rmu_sc0013411.1_g000013
rosa_roxburghii	Rroxscaffold_3G00237110 Rroxscaffold_5G00347330
rosa_rugosa	Rorug01G0138600.1 Rorug04G0037100
rosa_samantha	Rh4AG114600 Rh4BG107000 Rh4DG106900 Rh6BG193500
rosa_wichuraiana	Rw4G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	18, 141, 342
AciI	CCGC	7 cut(s)	139, 207, 210, 234, 255, 299, 749
AclWI	GGATC	3 cut(s)	398, 411, 438
AcoI	YGGCCR	1 cut(s)	117
AfaI	GTAC	1 cut(s)	567
AgsI	TTSAA	2 cut(s)	370, 682
AjnI	CCWGG	2 cut(s)	479, 758
AluBI	AGCT	2 cut(s)	373, 647
AluI	AGCT	2 cut(s)	373, 647
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	3 cut(s)	9, 160, 473
AlwI	GGATC	3 cut(s)	398, 411, 438
AoxI	GGCC	4 cut(s)	97, 117, 265, 414
ApaI	GGGCCC	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	536, 725
AspLEI	GCGC	2 cut(s)	143, 342
AspS9I	GGNCC	4 cut(s)	97, 98, 266, 440
AsuC2I	CCSGG	3 cut(s)	116, 286, 408
AsuHPI	GGTGA	1 cut(s)	673
AvaII	GGWCC	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	101
BamHI	GGATCC	1 cut(s)	403
BanII	GRGCYC	3 cut(s)	101, 321, 649
BbsI	GAAGAC	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	2 cut(s)	523, 712
BccI	CCATC	2 cut(s)	184, 815
BceAI	ACGGC	1 cut(s)	280
BciT130I	CCWGG	2 cut(s)	481, 760
BciVI	GTATCC	1 cut(s)	814
BcnI	CCSGG	3 cut(s)	116, 286, 408
BcoDI	GTCTC	3 cut(s)	9, 160, 473
BfuI	GTATCC	1 cut(s)	814
BisI	GCNGC	3 cut(s)	210, 537, 726
BlsI	GCNGC	3 cut(s)	211, 538, 727
Bme1390I	CCNGG	5 cut(s)	116, 286, 408, 481, 760
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	4 cut(s)	97, 98, 266, 440
BmiI	GGNNCC	6 cut(s)	99, 100, 268, 295, 405, 441
BmrFI	CCNGG	5 cut(s)	116, 286, 408, 481, 760
BmrI	ACTGGG	3 cut(s)	123, 264, 584
BmsI	GCATC	1 cut(s)	497
BmuI	ACTGGG	3 cut(s)	123, 264, 584
BpiI	GAAGAC	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	439
BpuMI	CCSGG	3 cut(s)	116, 286, 408
BsaBI	GATNNNNATC	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	758
Bse1I	ACTGG	4 cut(s)	129, 270, 579, 711
Bse8I	GATNNNNATC	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	481, 760
BseDI	CCNNGG	1 cut(s)	758
BseGI	GGATG	2 cut(s)	161, 171
BseJI	GATNNNNATC	1 cut(s)	429
BseNI	ACTGG	4 cut(s)	129, 270, 579, 711
BseRI	GAGGAG	2 cut(s)	31, 193
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	523, 712
BseYI	CCCAGC	1 cut(s)	193
Bsh1236I	CGCG	3 cut(s)	18, 141, 342
BshFI	GGCC	4 cut(s)	99, 119, 267, 416
BsiHKAI	GWGCWC	1 cut(s)	649
BsiSI	CCGG	3 cut(s)	116, 285, 407
BslFI	GGGAC	4 cut(s)	11, 215, 341, 453
BsmAI	GTCTC	3 cut(s)	9, 160, 473
BsmBI	CGTCTC	1 cut(s)	160
BsmFI	GGGAC	4 cut(s)	11, 215, 341, 453
BsnI	GGCC	4 cut(s)	99, 119, 267, 416
Bso31I	GGTCTC	1 cut(s)	473
Bsp120I	GGGCCC	1 cut(s)	97
Bsp1286I	GDGCHC	3 cut(s)	101, 321, 649
Bsp143I	GATC	3 cut(s)	63, 403, 430
BspACI	CCGC	7 cut(s)	139, 207, 210, 234, 255, 299, 749
BspANI	GGCC	4 cut(s)	99, 119, 267, 416
BspFNI	CGCG	3 cut(s)	18, 141, 342
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	6 cut(s)	99, 100, 268, 295, 405, 441
BspPI	GGATC	3 cut(s)	398, 411, 438
BspTNI	GGTCTC	1 cut(s)	473
BsrI	ACTGG	4 cut(s)	129, 270, 579, 711
BssECI	CCNNGG	1 cut(s)	758
BssMI	GATC	3 cut(s)	63, 403, 430
Bst2UI	CCWGG	2 cut(s)	481, 760
Bst4CI	ACNGT	2 cut(s)	25, 334
BstC8I	GCNNGC	2 cut(s)	85, 534
BstDEI	CTNAG	1 cut(s)	605
BstF5I	GGATG	2 cut(s)	161, 171
BstFNI	CGCG	3 cut(s)	18, 141, 342
BstHHI	GCGC	2 cut(s)	143, 342
BstKTI	GATC	3 cut(s)	66, 406, 433
BstMAI	GTCTC	3 cut(s)	9, 160, 473
BstMBI	GATC	3 cut(s)	63, 403, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	533, 542
BstNI	CCWGG	2 cut(s)	481, 760
BstSCI	CCNGG	5 cut(s)	114, 284, 406, 479, 758
BstSLI	GKGCMC	1 cut(s)	101
BstUI	CGCG	3 cut(s)	18, 141, 342
BstV1I	GCAGC	2 cut(s)	523, 712
BstV2I	GAAGAC	1 cut(s)	602
BstX2I	RGATCY	2 cut(s)	403, 430
BstYI	RGATCY	2 cut(s)	403, 430
BsuI	GTATCC	1 cut(s)	814
BsuRI	GGCC	4 cut(s)	99, 119, 267, 416
BtsCI	GGATG	2 cut(s)	161, 171
BtsIMutI	CAGTG	2 cut(s)	557, 704
Cac8I	GCNNGC	2 cut(s)	85, 534
CciI	TCATGA	1 cut(s)	738
CfoI	GCGC	2 cut(s)	143, 342
Cfr13I	GGNCC	4 cut(s)	97, 98, 266, 440
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	566
CviAII	CATG	2 cut(s)	720, 739
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	1 cut(s)	605
DpnI	GATC	3 cut(s)	65, 405, 432
DpnII	GATC	3 cut(s)	63, 403, 430
EaeI	YGGCCR	1 cut(s)	117
EciI	GGCGGA	1 cut(s)	196
Ecl136II	GAGCTC	1 cut(s)	647
Eco147I	AGGCCT	1 cut(s)	416
Eco24I	GRGCYC	3 cut(s)	101, 321, 649
Eco31I	GGTCTC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	440
Eco53kI	GAGCTC	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	647
EcoO109I	RGGNCCY	2 cut(s)	98, 440
EcoRII	CCWGG	2 cut(s)	479, 758
EcoT38I	GRGCYC	3 cut(s)	101, 321, 649
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	2 cut(s)	723, 742
FaiI	YATR	8 cut(s)	587, 655, 659, 672, 721, 730, 740, 801
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	4 cut(s)	11, 215, 341, 453
FatI	CATG	2 cut(s)	719, 738
FauI	CCCGC	3 cut(s)	146, 241, 306
Fnu4HI	GCNGC	3 cut(s)	210, 537, 726
FokI	GGATG	2 cut(s)	148, 158
FriOI	GRGCYC	3 cut(s)	101, 321, 649
Fsp4HI	GCNGC	3 cut(s)	210, 537, 726
GlaI	GCGC	2 cut(s)	142, 341
GluI	GCNGC	3 cut(s)	210, 537, 726
GsaI	CCCAGC	1 cut(s)	197
HaeIII	GGCC	4 cut(s)	99, 119, 267, 416
HapII	CCGG	3 cut(s)	116, 285, 407
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	2 cut(s)	143, 342
Hin1II	CATG	2 cut(s)	723, 742
Hin6I	GCGC	2 cut(s)	141, 340
HinP1I	GCGC	2 cut(s)	141, 340
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	2 cut(s)	354, 550
HpaII	CCGG	3 cut(s)	116, 285, 407
HphI	GGTGA	1 cut(s)	673
Hpy166II	GTNNAC	2 cut(s)	581, 754
Hpy188I	TCNGA	5 cut(s)	13, 52, 505, 555, 651
Hpy188III	TCNNGA	6 cut(s)	351, 358, 398, 598, 635, 739
Hpy8I	GTNNAC	2 cut(s)	581, 754
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	3 cut(s)	231, 658, 676
HpyCH4III	ACNGT	2 cut(s)	25, 334
HpyCH4IV	ACGT	2 cut(s)	108, 639
HpyCH4V	TGCA	3 cut(s)	488, 728, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	533, 542
HpyF3I	CTNAG	1 cut(s)	605
HpySE526I	ACGT	2 cut(s)	108, 639
Hsp92II	CATG	2 cut(s)	723, 742
HspAI	GCGC	2 cut(s)	141, 340
Kzo9I	GATC	3 cut(s)	63, 403, 430
LmnI	GCTCC	2 cut(s)	299, 644
Lsp1109I	GCAGC	2 cut(s)	523, 712
LweI	GCATC	1 cut(s)	497
MaeII	ACGT	2 cut(s)	108, 639
MaeIII	GTNAC	1 cut(s)	700
MalI	GATC	3 cut(s)	65, 405, 432
MboI	GATC	3 cut(s)	63, 403, 430
MboII	GAAGA	5 cut(s)	268, 439, 442, 586, 602
MflI	RGATCY	2 cut(s)	403, 430
MhlI	GDGCHC	3 cut(s)	101, 321, 649
MluCI	AATT	1 cut(s)	364
MmeI	TCCRAC	2 cut(s)	75, 622
MseI	TTAA	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	749
MspI	CCGG	3 cut(s)	116, 285, 407
MspR9I	CCNGG	5 cut(s)	116, 286, 408, 481, 760
MvaI	CCWGG	2 cut(s)	481, 760
MvnI	CGCG	3 cut(s)	18, 141, 342
MwoI	GCNNNNNNNGC	2 cut(s)	533, 542
NciI	CCSGG	3 cut(s)	116, 286, 408
NdeII	GATC	3 cut(s)	63, 403, 430
NlaIII	CATG	2 cut(s)	723, 742
NlaIV	GGNNCC	6 cut(s)	99, 100, 268, 295, 405, 441
PagI	TCATGA	1 cut(s)	738
PceI	AGGCCT	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	354, 550
PflFI	GACNNNGTC	1 cut(s)	23
PfoI	TCCNGGA	1 cut(s)	406
PkrI	GCNGC	3 cut(s)	211, 538, 727
PpuMI	RGGWCCY	1 cut(s)	440
Psp124BI	GAGCTC	1 cut(s)	649
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	479, 758
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	2 cut(s)	479, 758
PspN4I	GGNNCC	6 cut(s)	99, 100, 268, 295, 405, 441
PspOMI	GGGCCC	1 cut(s)	97
PspPI	GGNCC	4 cut(s)	97, 98, 266, 440
PspPPI	RGGWCCY	1 cut(s)	440
PsuI	RGATCY	2 cut(s)	403, 430
PsyI	GACNNNGTC	1 cut(s)	23
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
SacI	GAGCTC	1 cut(s)	649
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	3 cut(s)	210, 537, 726
Sau3AI	GATC	3 cut(s)	63, 403, 430
Sau96I	GGNCC	4 cut(s)	97, 98, 266, 440
ScrFI	CCNGG	5 cut(s)	116, 286, 408, 481, 760
SduI	GDGCHC	3 cut(s)	101, 321, 649
SfaNI	GCATC	1 cut(s)	497
SinI	GGWCC	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	1 cut(s)	364
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	7 cut(s)	139, 207, 210, 234, 255, 299, 749
SspI	AATATT	1 cut(s)	591
SstI	GAGCTC	1 cut(s)	649
StuI	AGGCCT	1 cut(s)	416
StyD4I	CCNGG	5 cut(s)	114, 284, 406, 479, 758
TaaI	ACNGT	2 cut(s)	25, 334
TaiI	ACGT	2 cut(s)	111, 642
TaqI	TCGA	3 cut(s)	57, 66, 350
TasI	AATT	1 cut(s)	364
TatI	WGTACW	1 cut(s)	565
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	2 cut(s)	354, 550
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	2 cut(s)	564, 711
TseI	GCWGC	2 cut(s)	536, 725
TspDTI	ATGAA	4 cut(s)	160, 442, 708, 727
TspGWI	ACGGA	1 cut(s)	217
TspRI	CASTG	2 cut(s)	564, 711
Tth111I	GACNNNGTC	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.