RchiOBHm_Chr4g0402611

Yip1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0006639
Physical Location & Seq
Reverse (-)
21246289 .. 21248405
2117 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37439

Sequence Viewer

Length: 858 bp
ATGTCGCACTCCTACAGCGAAAGCGACACCGTTCCCCTCCACCCTTCCTCCCAGTCCGACATCGACGAGATCGAAAACCTAATCAACGCCAGCGTCCAATCCGGCCCCACCACGGTCCTCCCCGCCAAGCCTCCCAGCCCCCCCCGCGCCTCCATCCCCGTCTCCTCCTCCTCCCCCTTCATCCAATCCAACCTCCCCCAACCGGCCCCTCCCGCCTCCTCCAAGCCCAAGCCTCCGCCGCCGTCCTCCGTCCCCGCCCCTCCCCCCGTCCCCTCCGCCGCCAACAACAACAACATCGCCGCTTCCGGCTTCGGCTCCCCGCCCAACACCCTAACGGAGCCCGTTTGGGACACCGTCAAGAGGGACTTGTCTCGGATCGTCAGCAATTTGAAGCTCGTCGTCTTCCCTAACCCCTACCGTGAGGACCCCGGAAAGGCTCTCAGGGATTGGGATCTATGGGGTCCTTTCTTCTTCATTGTTTTCTTGGGCCTCACTCTCTCCTGGTCTGCATCTGTCAAGAAGTCTGAAGTTTTCGCTGTTGCATTTGCCGTACTTGCTGCTGGTGCTGTGATTTTGACATTGAATGTACTCCTACTGGGGGGACACATAATTTTCTTTCAGAGCCTAAGTCTTCTTGGTTATTGCTTATTCCCTCTGGATGTTGGAGCTTTAATCTGTATGGTGAAGGACAATGTGATATTGAAGGTTGTTGTAGTAAGCATTACACTGGCTTGGAGTTCTTGGTCTGCATATCCTTTCATGAGTTCAGCAGTCAACCCCAGGAGAAAAGCTCTCGCACTTTACCCAGTTTTCTTGCTGTATGTATCTGTTGGTTTTCTTATCATCGCCATTGATTAA

Protein Analysis

285

Amino Acids

30.5

Weight (kDa)

7.76

Isoelectric Point (pI)

64.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 147 - 279 4.8e-15 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 147
AclWI GGATC 2 cut(s) 383, 459
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 2 cut(s) 552, 588
AfiI CCNNNNNNNGG 5 cut(s) 112, 202, 360, 433, 598
AgsI TTSAA 3 cut(s) 391, 583, 703
AjnI CCWGG 2 cut(s) 500, 779
AluBI AGCT 3 cut(s) 394, 668, 791
AluI AGCT 3 cut(s) 394, 668, 791
Alw26I GTCTC 2 cut(s) 166, 375
AlwI GGATC 2 cut(s) 383, 459
AoxI GGCC 3 cut(s) 103, 204, 487
ApeKI GCWGC 1 cut(s) 557
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 6 cut(s) 104, 115, 205, 424, 461, 487
AsuC2I CCSGG 1 cut(s) 429
AsuHPI GGTGA 1 cut(s) 694
AvaII GGWCC 3 cut(s) 115, 424, 461
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 2 cut(s) 394, 623
BbvI GCAGC 1 cut(s) 544
BccI CCATC 1 cut(s) 161
BceAI ACGGC 2 cut(s) 226, 533
BciT130I CCWGG 2 cut(s) 502, 781
BcnI CCSGG 1 cut(s) 429
BcoDI GTCTC 2 cut(s) 166, 375
BfmI CTRYAG 1 cut(s) 13
BisI GCNGC 4 cut(s) 239, 279, 300, 558
BlsI GCNGC 4 cut(s) 240, 280, 301, 559
Bme1390I CCNGG 3 cut(s) 429, 502, 781
Bme18I GGWCC 3 cut(s) 115, 424, 461
BmgT120I GGNCC 6 cut(s) 104, 115, 205, 424, 461, 487
BmiI GGNNCC 6 cut(s) 106, 207, 316, 339, 426, 462
BmrFI CCNGG 3 cut(s) 429, 502, 781
BmrI ACTGGG 3 cut(s) 46, 605, 800
BmsI GCATC 1 cut(s) 518
BmuI ACTGGG 3 cut(s) 46, 605, 800
BpiI GAAGAC 2 cut(s) 394, 623
BplI GAGNNNNNCTC 2 cut(s) 775, 807
BpuMI CCSGG 1 cut(s) 429
BsaBI GATNNNNATC 1 cut(s) 450
BsaJI CCNNGG 3 cut(s) 111, 427, 779
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 5 cut(s) 112, 202, 360, 433, 598
Bse118I RCCGGY 1 cut(s) 202
Bse1I ACTGG 4 cut(s) 52, 600, 732, 806
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 2 cut(s) 502, 781
BseDI CCNNGG 3 cut(s) 111, 427, 779
BseGI GGATG 3 cut(s) 153, 180, 664
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 5 cut(s) 112, 202, 360, 433, 598
BseMII CTCAG 1 cut(s) 454
BseNI ACTGG 4 cut(s) 52, 600, 732, 806
BseRI GAGGAG 4 cut(s) 154, 157, 160, 208
BseXI GCAGC 1 cut(s) 544
BseYI CCCAGC 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 3 cut(s) 105, 206, 489
BsiSI CCGG 4 cut(s) 102, 203, 306, 429
BslFI GGGAC 5 cut(s) 236, 254, 362, 377, 615
BslI CCNNNNNNNGG 5 cut(s) 112, 202, 360, 433, 598
BsmAI GTCTC 2 cut(s) 166, 375
BsmBI CGTCTC 1 cut(s) 166
BsmFI GGGAC 5 cut(s) 236, 254, 362, 377, 615
BsnI GGCC 3 cut(s) 105, 206, 489
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 3 cut(s) 69, 375, 451
BspANI GGCC 3 cut(s) 105, 206, 489
BspCNI CTCAG 1 cut(s) 453
BspFNI CGCG 1 cut(s) 147
BspHI TCATGA 1 cut(s) 759
BspLI GGNNCC 6 cut(s) 106, 207, 316, 339, 426, 462
BspPI GGATC 2 cut(s) 383, 459
BsrFI RCCGGY 1 cut(s) 202
BsrI ACTGG 4 cut(s) 52, 600, 732, 806
BssAI RCCGGY 1 cut(s) 202
BssECI CCNNGG 3 cut(s) 111, 427, 779
BssMI GATC 3 cut(s) 69, 375, 451
Bst2UI CCWGG 2 cut(s) 502, 781
Bst4CI ACNGT 4 cut(s) 31, 115, 355, 419
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 440, 626
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 3 cut(s) 153, 180, 664
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 3 cut(s) 72, 378, 454
BstMAI GTCTC 2 cut(s) 166, 375
BstMBI GATC 3 cut(s) 69, 375, 451
BstMWI GCNNNNNNNGC 5 cut(s) 144, 212, 238, 554, 563
BstNI CCWGG 2 cut(s) 502, 781
BstSCI CCNGG 3 cut(s) 427, 500, 779
BstSFI CTRYAG 1 cut(s) 13
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 544
BstV2I GAAGAC 2 cut(s) 394, 623
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BsuRI GGCC 3 cut(s) 105, 206, 489
BtgI CCRYGG 1 cut(s) 111
BtgZI GCGATG 2 cut(s) 280, 829
BtsCI GGATG 3 cut(s) 153, 180, 664
BtsIMutI CAGTG 1 cut(s) 725
Cac8I GCNNGC 1 cut(s) 91
CciI TCATGA 1 cut(s) 759
CfoI GCGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 202
Cfr13I GGNCC 6 cut(s) 104, 115, 205, 424, 461, 487
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 551, 587
CviAII CATG 1 cut(s) 760
CviQI GTAC 2 cut(s) 551, 587
DdeI CTNAG 2 cut(s) 440, 626
DpnI GATC 3 cut(s) 71, 377, 453
DpnII GATC 3 cut(s) 69, 375, 451
EciI GGCGGA 2 cut(s) 225, 265
Eco24I GRGCYC 1 cut(s) 342
Eco47I GGWCC 3 cut(s) 115, 424, 461
Eco57I CTGAAG 1 cut(s) 546
EcoO109I RGGNCCY 2 cut(s) 424, 461
EcoRII CCWGG 2 cut(s) 500, 779
EcoT38I GRGCYC 1 cut(s) 342
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 1 cut(s) 763
FaiI YATR 6 cut(s) 457, 608, 680, 751, 761, 822
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 5 cut(s) 236, 254, 362, 377, 615
FatI CATG 1 cut(s) 759
FauI CCCGC 5 cut(s) 130, 152, 220, 262, 327
Fnu4HI GCNGC 4 cut(s) 239, 279, 300, 558
FokI GGATG 3 cut(s) 140, 167, 671
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 4 cut(s) 239, 279, 300, 558
GlaI GCGC 1 cut(s) 148
GluI GCNGC 4 cut(s) 239, 279, 300, 558
GsaI CCCAGC 1 cut(s) 138
HaeIII GGCC 3 cut(s) 105, 206, 489
HapII CCGG 4 cut(s) 102, 203, 306, 429
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 149
Hin1II CATG 1 cut(s) 763
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HpaII CCGG 4 cut(s) 102, 203, 306, 429
HphI GGTGA 1 cut(s) 694
Hpy166II GTNNAC 1 cut(s) 775
Hpy188I TCNGA 4 cut(s) 58, 375, 526, 621
Hpy188III TCNNGA 4 cut(s) 358, 517, 656, 760
Hpy8I GTNNAC 1 cut(s) 775
Hpy99I CGWCG 2 cut(s) 68, 401
HpyAV CCTTC 4 cut(s) 54, 187, 679, 697
HpyCH4III ACNGT 4 cut(s) 31, 115, 355, 419
HpyCH4V TGCA 3 cut(s) 509, 542, 749
HpyF10VI GCNNNNNNNGC 5 cut(s) 144, 212, 238, 554, 563
HpyF3I CTNAG 2 cut(s) 440, 626
Hsp92II CATG 1 cut(s) 763
HspAI GCGC 1 cut(s) 147
Kzo9I GATC 3 cut(s) 69, 375, 451
LmnI GCTCC 3 cut(s) 320, 337, 665
Lsp1109I GCAGC 1 cut(s) 544
LweI GCATC 1 cut(s) 518
MalI GATC 3 cut(s) 71, 377, 453
MboI GATC 3 cut(s) 69, 375, 451
MboII GAAGA 4 cut(s) 394, 460, 463, 623
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 2 cut(s) 385, 609
MmeI TCCRAC 3 cut(s) 81, 213, 643
MseI TTAA 2 cut(s) 671, 856
MspI CCGG 4 cut(s) 102, 203, 306, 429
MspR9I CCNGG 3 cut(s) 429, 502, 781
MvaI CCWGG 2 cut(s) 502, 781
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 5 cut(s) 144, 212, 238, 554, 563
NciI CCSGG 1 cut(s) 429
NdeII GATC 3 cut(s) 69, 375, 451
NlaIII CATG 1 cut(s) 763
NlaIV GGNNCC 6 cut(s) 106, 207, 316, 339, 426, 462
PagI TCATGA 1 cut(s) 759
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 4 cut(s) 240, 280, 301, 559
PpuMI RGGWCCY 2 cut(s) 424, 461
Psp5II RGGWCCY 2 cut(s) 424, 461
Psp6I CCWGG 2 cut(s) 500, 779
PspFI CCCAGC 1 cut(s) 134
PspGI CCWGG 2 cut(s) 500, 779
PspN4I GGNNCC 6 cut(s) 106, 207, 316, 339, 426, 462
PspPI GGNCC 6 cut(s) 104, 115, 205, 424, 461, 487
PspPPI RGGWCCY 2 cut(s) 424, 461
PsuI RGATCY 1 cut(s) 451
PsyI GACNNNGTC 1 cut(s) 353
RsaI GTAC 2 cut(s) 552, 588
RsaNI GTAC 2 cut(s) 551, 587
SaqAI TTAA 2 cut(s) 671, 856
SatI GCNGC 4 cut(s) 239, 279, 300, 558
Sau3AI GATC 3 cut(s) 69, 375, 451
Sau96I GGNCC 6 cut(s) 104, 115, 205, 424, 461, 487
ScrFI CCNGG 3 cut(s) 429, 502, 781
SduI GDGCHC 1 cut(s) 342
SetI ASST 6 cut(s) 81, 195, 396, 670, 708, 793
SfaNI GCATC 1 cut(s) 518
SfcI CTRYAG 1 cut(s) 13
SinI GGWCC 3 cut(s) 115, 424, 461
Sse9I AATT 2 cut(s) 385, 609
StyD4I CCNGG 3 cut(s) 427, 500, 779
TaaI ACNGT 4 cut(s) 31, 115, 355, 419
TaqI TCGA 2 cut(s) 63, 72
TasI AATT 2 cut(s) 385, 609
TatI WGTACW 1 cut(s) 586
TauI GCSGC 3 cut(s) 241, 281, 302
Tru1I TTAA 2 cut(s) 671, 856
Tru9I TTAA 2 cut(s) 671, 856
TscAI CASTG 1 cut(s) 732
TseI GCWGC 1 cut(s) 557
TspDTI ATGAA 3 cut(s) 169, 463, 748
TspGWI ACGGA 2 cut(s) 238, 350
TspRI CASTG 1 cut(s) 732
Tth111I GACNNNGTC 1 cut(s) 353
VpaK11BI GGWCC 3 cut(s) 115, 424, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.