Rh6BG193500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006639
Physical Location & Seq
Forward (+)
36350692 .. 36360965
10274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG193500.1

Sequence Viewer

Length: 303 bp
ATGCCTAGGGGTGTTGAAGAGCTTGCTGGTGCTGTTAAAGTCAAAATGGGGCCAAAAGTGAGTGGCCTTTTCATTGTTATTGTTGGATTTGATGCTTTGCTCAAGCACAATCATGTACATTACAACAATATTGTTATAGCCAACGTTTTAAATGATGGAAATGGGGAGCTAAACTTTGACCCGCGAAAAAGTGTTCCGCATTGCTCTATTGCTGGTGCGCCAAACAGGGTCTTAGATCTGAATGAGAACCCACATTCTCTGGTTCAGGGAATGTGCATTCGAATTCTAGATCTTGAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.87

Weight (kDa)

6.49

Isoelectric Point (pI)

24.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 184
AciI CCGC 2 cut(s) 182, 197
AclI AACGTT 1 cut(s) 144
AcsI RAATTY 1 cut(s) 282
AfaI GTAC 1 cut(s) 117
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 3 cut(s) 22, 169, 298
AluI AGCT 3 cut(s) 22, 169, 298
AoxI GGCC 2 cut(s) 50, 64
ApoI RAATTY 1 cut(s) 282
AspA2I CCTAGG 1 cut(s) 5
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 50
AsuII TTCGAA 1 cut(s) 280
AvrII CCTAGG 1 cut(s) 5
BccI CCATC 1 cut(s) 149
BfaI CTAG 2 cut(s) 6, 287
BglII AGATCT 2 cut(s) 235, 289
BlnI CCTAGG 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 51
BmsI GCATC 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 280
BpuEI CTTGAG 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 5
Bse3DI GCAATG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 5
BseMI GCAATG 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 2 cut(s) 52, 66
BsmI GAATGC 1 cut(s) 276
BsnI GGCC 2 cut(s) 52, 66
Bsp119I TTCGAA 1 cut(s) 280
Bsp1407I TGTACA 1 cut(s) 115
Bsp143I GATC 2 cut(s) 235, 289
BspACI CCGC 2 cut(s) 182, 197
BspANI GGCC 2 cut(s) 52, 66
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 51
BspQI GCTCTTC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 199
BsrGI TGTACA 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 2 cut(s) 235, 289
BssT1I CCWWGG 1 cut(s) 5
Bst6I CTCTTC 1 cut(s) 12
BstAUI TGTACA 1 cut(s) 115
BstBI TTCGAA 1 cut(s) 280
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 232
BstFNI CGCG 1 cut(s) 184
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 2 cut(s) 238, 292
BstMBI GATC 2 cut(s) 235, 289
BstUI CGCG 1 cut(s) 184
BstX2I RGATCY 2 cut(s) 235, 289
BstYI RGATCY 2 cut(s) 235, 289
BsuRI GGCC 2 cut(s) 52, 66
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 116
CviAII CATG 1 cut(s) 113
CviJI RGCY 6 cut(s) 22, 52, 66, 140, 169, 298
CviKI_1 RGCY 6 cut(s) 22, 52, 66, 140, 169, 298
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 1 cut(s) 232
DpnI GATC 2 cut(s) 237, 291
DpnII GATC 2 cut(s) 235, 289
DraI TTTAAA 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 5
EcoRI GAATTC 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 5
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 1 cut(s) 116
FaiI YATR 2 cut(s) 114, 137
FatI CATG 1 cut(s) 112
FauI CCCGC 1 cut(s) 189
FspBI CTAG 2 cut(s) 6, 287
GlaI GCGC 1 cut(s) 219
HaeIII GGCC 2 cut(s) 52, 66
HhaI GCGC 1 cut(s) 220
Hin1II CATG 1 cut(s) 116
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 2 cut(s) 287, 293
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 276
HpyF3I CTNAG 1 cut(s) 232
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 1 cut(s) 116
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 2 cut(s) 235, 289
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 5 cut(s) 12, 198, 211, 245, 251
LweI GCATC 1 cut(s) 82
MaeI CTAG 2 cut(s) 6, 287
MaeII ACGT 1 cut(s) 144
MalI GATC 2 cut(s) 237, 291
MboI GATC 2 cut(s) 235, 289
MboII GAAGA 1 cut(s) 29
MflI RGATCY 2 cut(s) 235, 289
MluCI AATT 1 cut(s) 282
MmeI TCCRAC 1 cut(s) 64
MseI TTAA 2 cut(s) 36, 149
MslI CAYNNNNRTG 1 cut(s) 111
Mva1269I GAATGC 1 cut(s) 276
MvnI CGCG 1 cut(s) 184
NdeII GATC 2 cut(s) 235, 289
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 1 cut(s) 51
NspV TTCGAA 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 12
PctI GAATGC 1 cut(s) 276
Psp1406I AACGTT 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 50
PsuI RGATCY 2 cut(s) 235, 289
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 36, 149
Sau3AI GATC 2 cut(s) 235, 289
Sau96I GGNCC 1 cut(s) 50
SetI ASST 4 cut(s) 24, 147, 171, 300
SfaNI GCATC 1 cut(s) 82
SfuI TTCGAA 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 2 cut(s) 101, 293
SmoI CTYRAG 2 cut(s) 101, 293
Sse9I AATT 1 cut(s) 282
SsiI CCGC 2 cut(s) 182, 197
SspI AATATT 1 cut(s) 130
SspMI CTAG 2 cut(s) 6, 287
StyI CCWWGG 1 cut(s) 5
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 280
TasI AATT 1 cut(s) 282
TatI WGTACW 1 cut(s) 115
Tru1I TTAA 2 cut(s) 36, 149
Tru9I TTAA 2 cut(s) 36, 149
TspDTI ATGAA 1 cut(s) 61
XapI RAATTY 1 cut(s) 282
XbaI TCTAGA 1 cut(s) 286
XmaJI CCTAGG 1 cut(s) 5
XspI CTAG 2 cut(s) 6, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.