Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006639

Physical Location & Seq

Genomic Coordinates Forward (+)

52515155 .. 52519943

Gene Structure 4789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029975

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTCACACTCCCACTCCCACAGTGAAAGCGACATCGTTCCCCTCCACCCTTCCTCCCAATCCGACATCAACGAGATCAAAAACCAAATCAATGCCAACGTCCAATCGAGCCCCACCACGGCCAAGCAGCCGCCATCTGTCCCCGCCCCTCCTCCCATCCCCTCCGCCGCCAACAACAACGGCCCCATTAACATCGCCACTTCTGGGTTCAGCTCCCCGCCCAACACCATAACGGAGCCCGTTTGGGATACAGTCAAGAGGGACTTGTGTCGGATCATCATCAATTTGAAGCCCGTCGTCTTCCCAACCCCTACTGTGAGGACCCCGGAAAGGCTCTCATGGGGTCTCTGCTGTCCTTTCTTCTTCATTGTGTTCTTGGGTCCCACTTTGTCCTGGTCTGCATCTGTCAAGAAGTATGAAGTTTTCACTGTTGCATATGCTGTACTTGCTGATGGTGCTGTCATTTTGACATTGAATATACTCCTACTGTATTATTTCTTCTTGGTGAAAGATAGAGAGCACTTGGACGGATCGGTGCAGCTCTTGTGCTTGGTCCAAACCATCTTCCAAGAGTTGCAATTGTTAGAAGACCAAATGTTGGGACGCAATATCAAGTGGACTTCTAATAGGGAATACAGGAGAAAGATGCTGAGGTTACTAACCATACTTGCCTTGAGAGATTCATACTTGATGAGATGGAGTAGCTTAGGATATTATAGTCTAGAGGGCAGCTCAAGAGGTGGAACAGTCAAGGAGTCGAAAAGTGAATGGTTCTTTCAAGTTTTAATGGCTGTGAGAGGTCTAACAGACCAATGTGGACAACCACTACATGTCTGCATTAGTAAAGCATTGTGTGTTCAAGAAATTAGCATGTTATCAACCAGTATGCTAAAGTTCATGTGGACAATCAAAAGAATGGCCAAGAACATTGCTGCTGGGTTAATTCTAGCAAGTTTACAAAGTGGTTATCTTTTAGAGCTCCGTTCAGAGATGCTAAGAGAGCTATCTATGAAGGTTAAATTGGAGAAGCTAGTAATGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

348

Amino Acids

39.03

Weight (kDa)

9.0

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18840 AT4G30260 AT4G30260 AT4G30260
fragaria_vesca	FvH4_4g09840 FvH4_4g09840
malus_domestica	MD13G1256000.v1.1 MD13G1256300.v1.1
prunus_persica	Prupe.1G086600_v2.0.a1
pyrus_communis	pycom13g22680 pycom13g22700
rosa_chinensis	RchiOBHm_Chr4g0402611 RchiOBHm_Chr4g0439321
rosa_laevigata	RLG00000009061 RLG00000029975 RLG00000030249
rosa_multiflora	Rmu_sc0013411.1_g000013
rosa_roxburghii	Rroxscaffold_3G00237110 Rroxscaffold_5G00347330
rosa_rugosa	Rorug01G0138600.1 Rorug04G0037100
rosa_samantha	Rh4AG114600 Rh4BG107000 Rh4DG106900 Rh6BG193500
rosa_wichuraiana	Rw4G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	598
AciI	CCGC	5 cut(s)	131, 144, 165, 168, 218
AclWI	GGATC	2 cut(s)	281, 538
AcoI	YGGCCR	2 cut(s)	120, 918
AfaI	GTAC	1 cut(s)	444
AfiI	CCNNNNNNNGG	4 cut(s)	118, 204, 330, 598
AflIII	ACRYGT	1 cut(s)	829
AgsI	TTSAA	4 cut(s)	289, 475, 779, 860
AjnI	CCWGG	1 cut(s)	392
AjuI	GAANNNNNNNTTGG	2 cut(s)	1004, 1036
AluBI	AGCT	7 cut(s)	213, 541, 705, 732, 979, 1003, 1030
AluI	AGCT	7 cut(s)	213, 541, 705, 732, 979, 1003, 1030
Alw21I	GWGCWC	2 cut(s)	522, 981
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	2 cut(s)	281, 538
AoxI	GGCC	3 cut(s)	120, 181, 918
ApeKI	GCWGC	4 cut(s)	127, 538, 729, 932
AspS9I	GGNCC	4 cut(s)	182, 321, 380, 553
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	517
AvaII	GGWCC	3 cut(s)	321, 380, 553
BalI	TGGCCA	1 cut(s)	920
BanII	GRGCYC	3 cut(s)	113, 240, 981
BarI	GAAGNNNNNNTAC	2 cut(s)	482, 514
BbsI	GAAGAC	2 cut(s)	292, 594
Bbv12I	GWGCWC	2 cut(s)	522, 981
BbvCI	CCTCAGC	1 cut(s)	650
BbvI	GCAGC	4 cut(s)	139, 550, 741, 919
BccI	CCATC	5 cut(s)	142, 164, 446, 569, 690
BceAI	ACGGC	2 cut(s)	135, 196
BciT130I	CCWGG	1 cut(s)	394
BciVI	GTATCC	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	3 cut(s)	722, 947, 1031
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	6 cut(s)	128, 131, 168, 539, 730, 933
BlsI	GCNGC	6 cut(s)	129, 132, 169, 540, 731, 934
Bme1390I	CCNGG	2 cut(s)	326, 394
Bme18I	GGWCC	3 cut(s)	321, 380, 553
BmgT120I	GGNCC	4 cut(s)	182, 321, 380, 553
BmiI	GGNNCC	5 cut(s)	184, 237, 323, 381, 382
BmrFI	CCNGG	2 cut(s)	326, 394
BmsI	GCATC	3 cut(s)	410, 636, 981
BoxI	GACNNNNGTC	1 cut(s)	267
BpiI	GAAGAC	2 cut(s)	292, 594
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
Bpu10I	CCTNAGC	2 cut(s)	650, 706
BpuEI	CTTGAG	2 cut(s)	694, 718
BpuMI	CCSGG	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	2 cut(s)	117, 324
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 38, 68
Bsc4I	CCNNNNNNNGG	4 cut(s)	118, 204, 330, 598
Bse1I	ACTGG	1 cut(s)	882
Bse3DI	GCAATG	1 cut(s)	927
Bse8I	GATNNNNATC	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	2 cut(s)	117, 324
BseGI	GGATG	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	4 cut(s)	118, 204, 330, 598
BseMI	GCAATG	1 cut(s)	927
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	1 cut(s)	882
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	4 cut(s)	139, 550, 741, 919
BseYI	CCCAGC	1 cut(s)	935
BsgI	GTGCAG	1 cut(s)	557
BshFI	GGCC	3 cut(s)	122, 183, 920
BsiHKAI	GWGCWC	2 cut(s)	522, 981
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	4 cut(s)	125, 275, 366, 615
BslI	CCNNNNNNNGG	4 cut(s)	118, 204, 330, 598
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	4 cut(s)	125, 275, 366, 615
BsnI	GGCC	3 cut(s)	122, 183, 920
Bso31I	GGTCTC	1 cut(s)	350
Bsp1286I	GDGCHC	4 cut(s)	113, 240, 522, 981
Bsp143I	GATC	3 cut(s)	75, 273, 530
BspACI	CCGC	5 cut(s)	131, 144, 165, 168, 218
BspANI	GGCC	3 cut(s)	122, 183, 920
BspCNI	CTCAG	1 cut(s)	642
BspLI	GGNNCC	5 cut(s)	184, 237, 323, 381, 382
BspPI	GGATC	2 cut(s)	281, 538
BspTNI	GGTCTC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	927
BsrI	ACTGG	1 cut(s)	882
BssECI	CCNNGG	2 cut(s)	117, 324
BssMI	GATC	3 cut(s)	75, 273, 530
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	6 cut(s)	23, 253, 316, 430, 489, 748
BstDEI	CTNAG	3 cut(s)	650, 706, 995
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	3 cut(s)	78, 276, 533
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	3 cut(s)	75, 273, 530
BstMWI	GCNNNNNNNGC	3 cut(s)	446, 455, 1000
BstNI	CCWGG	1 cut(s)	394
BstNSI	RCATGY	2 cut(s)	833, 874
BstPAI	GACNNNNGTC	1 cut(s)	267
BstSCI	CCNGG	2 cut(s)	324, 392
BstV1I	GCAGC	4 cut(s)	139, 550, 741, 919
BstV2I	GAAGAC	2 cut(s)	292, 594
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	122, 183, 920
BtgI	CCRYGG	1 cut(s)	117
BtgZI	GCGATG	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	28, 426
Cfr13I	GGNCC	4 cut(s)	182, 321, 380, 553
CseI	GACGC	1 cut(s)	612
Csp6I	GTAC	1 cut(s)	443
CviAII	CATG	4 cut(s)	339, 830, 871, 898
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	3 cut(s)	650, 706, 995
DpnI	GATC	3 cut(s)	77, 275, 532
DpnII	GATC	3 cut(s)	75, 273, 530
EaeI	YGGCCR	2 cut(s)	120, 918
EciI	GGCGGA	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	979
Eco24I	GRGCYC	3 cut(s)	113, 240, 981
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	3 cut(s)	321, 380, 553
Eco53kI	GAGCTC	1 cut(s)	979
EcoICRI	GAGCTC	1 cut(s)	979
EcoO109I	RGGNCCY	2 cut(s)	321, 380
EcoRII	CCWGG	1 cut(s)	392
EcoT38I	GRGCYC	3 cut(s)	113, 240, 981
FaeI	CATG	4 cut(s)	342, 833, 874, 901
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	4 cut(s)	125, 275, 366, 615
FatI	CATG	4 cut(s)	338, 829, 870, 897
FauI	CCCGC	2 cut(s)	151, 225
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	6 cut(s)	128, 131, 168, 539, 730, 933
FokI	GGATG	1 cut(s)	143
FriOI	GRGCYC	3 cut(s)	113, 240, 981
Fsp4HI	GCNGC	6 cut(s)	128, 131, 168, 539, 730, 933
FspBI	CTAG	3 cut(s)	722, 947, 1031
GluI	GCNGC	6 cut(s)	128, 131, 168, 539, 730, 933
GsaI	CCCAGC	1 cut(s)	939
HaeIII	GGCC	3 cut(s)	122, 183, 920
HapII	CCGG	1 cut(s)	326
HgaI	GACGC	1 cut(s)	612
Hin1II	CATG	4 cut(s)	342, 833, 874, 901
HinfI	GANTC	2 cut(s)	680, 755
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	517
Hpy166II	GTNNAC	4 cut(s)	618, 818, 903, 956
Hpy188I	TCNGA	3 cut(s)	64, 273, 988
Hpy188III	TCNNGA	5 cut(s)	256, 409, 722, 735, 860
Hpy8I	GTNNAC	4 cut(s)	618, 818, 903, 956
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	2 cut(s)	60, 1006
HpyCH4III	ACNGT	6 cut(s)	23, 253, 316, 430, 489, 748
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	401, 434, 538, 577, 837
HpyF10VI	GCNNNNNNNGC	3 cut(s)	446, 455, 1000
HpyF3I	CTNAG	3 cut(s)	650, 706, 995
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	342, 833, 874, 901
KflI	GGGWCCC	1 cut(s)	380
Kzo9I	GATC	3 cut(s)	75, 273, 530
LmnI	GCTCC	3 cut(s)	218, 235, 984
LpnPI	CCDG	7 cut(s)	189, 339, 379, 406, 622, 895, 921
Lsp1109I	GCAGC	4 cut(s)	139, 550, 741, 919
LweI	GCATC	3 cut(s)	410, 636, 981
MaeI	CTAG	3 cut(s)	722, 947, 1031
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	3, 654
MalI	GATC	3 cut(s)	77, 275, 532
MboI	GATC	3 cut(s)	75, 273, 530
MboII	GAAGA	6 cut(s)	292, 352, 355, 490, 556, 599
MfeI	CAATTG	1 cut(s)	578
MhlI	GDGCHC	4 cut(s)	113, 240, 522, 981
MlsI	TGGCCA	1 cut(s)	920
MluCI	AATT	5 cut(s)	283, 578, 864, 942, 1019
MluNI	TGGCCA	1 cut(s)	920
MlyI	GAGTC	1 cut(s)	764
MmeI	TCCRAC	2 cut(s)	87, 251
Mox20I	TGGCCA	1 cut(s)	920
MscI	TGGCCA	1 cut(s)	920
MseI	TTAA	4 cut(s)	189, 785, 941, 1017
Msp20I	TGGCCA	1 cut(s)	920
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	2 cut(s)	326, 394
MunI	CAATTG	1 cut(s)	578
MvaI	CCWGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	3 cut(s)	446, 455, 1000
NciI	CCSGG	1 cut(s)	326
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	3 cut(s)	75, 273, 530
NlaIII	CATG	4 cut(s)	342, 833, 874, 901
NlaIV	GGNNCC	5 cut(s)	184, 237, 323, 381, 382
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	2 cut(s)	833, 874
PciI	ACATGT	1 cut(s)	829
PfeI	GAWTC	1 cut(s)	680
PflMI	CCANNNNNTGG	1 cut(s)	598
PkrI	GCNGC	6 cut(s)	129, 132, 169, 540, 731, 934
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
PpuMI	RGGWCCY	2 cut(s)	321, 380
PscI	ACATGT	1 cut(s)	829
PshAI	GACNNNNGTC	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	981
Psp5II	RGGWCCY	2 cut(s)	321, 380
Psp6I	CCWGG	1 cut(s)	392
PspFI	CCCAGC	1 cut(s)	935
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	5 cut(s)	184, 237, 323, 381, 382
PspPI	GGNCC	4 cut(s)	182, 321, 380, 553
PspPPI	RGGWCCY	2 cut(s)	321, 380
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	981
SaqAI	TTAA	4 cut(s)	189, 785, 941, 1017
SatI	GCNGC	6 cut(s)	128, 131, 168, 539, 730, 933
Sau3AI	GATC	3 cut(s)	75, 273, 530
Sau96I	GGNCC	4 cut(s)	182, 321, 380, 553
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	2 cut(s)	326, 394
SduI	GDGCHC	4 cut(s)	113, 240, 522, 981
SfaNI	GCATC	3 cut(s)	410, 636, 981
SinI	GGWCC	3 cut(s)	321, 380, 553
SmlI	CTYRAG	2 cut(s)	673, 733
SmoI	CTYRAG	2 cut(s)	673, 733
Sse9I	AATT	5 cut(s)	283, 578, 864, 942, 1019
SsiI	CCGC	5 cut(s)	131, 144, 165, 168, 218
SspMI	CTAG	3 cut(s)	722, 947, 1031
SstI	GAGCTC	1 cut(s)	981
StyD4I	CCNGG	2 cut(s)	324, 392
TaaI	ACNGT	6 cut(s)	23, 253, 316, 430, 489, 748
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	107, 758
TasI	AATT	5 cut(s)	283, 578, 864, 942, 1019
TatI	WGTACW	1 cut(s)	442
TauI	GCSGC	2 cut(s)	133, 170
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	4 cut(s)	189, 785, 941, 1017
Tru9I	TTAA	4 cut(s)	189, 785, 941, 1017
TscAI	CASTG	2 cut(s)	28, 433
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	4 cut(s)	127, 538, 729, 932
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	5 cut(s)	355, 432, 672, 886, 1025
TspGWI	ACGGA	3 cut(s)	248, 543, 971
TspRI	CASTG	2 cut(s)	28, 433
Van91I	CCANNNNNTGG	1 cut(s)	598
VpaK11BI	GGWCC	3 cut(s)	321, 380, 553
XbaI	TCTAGA	1 cut(s)	721
XceI	RCATGY	2 cut(s)	833, 874
XspI	CTAG	3 cut(s)	722, 947, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.