Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006639

Physical Location & Seq

Genomic Coordinates Reverse (-)

6453073 .. 6454984

Gene Structure 1912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G086600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCGCACTCCGAACGCGACACCGTTCCGCTCCACCCTTCCTCCCAATCGGACATCGACGAGATCGAAAACCTAATCAACGCCAGCGTCCAATCGGGCCCCACCACCGTGCTTCCCGCCAAACCCCCAAGTCCGACCCGAGCCTCGATCCCCGTCTCATCCTCGCCGTTCATCCAATCAAACCTCCCGCCGCCAGCTCCCTCTGCCTCCTCCAAACAGAAGCCGCCATCTGTCCCGGCCCCCCCGCCCATTCCCTCCGCCAACAACGGCCCGGGTATCGTGCCTTCCGGGTTCGGGTCCCCGCCCAACACGCTGACGGAGCCCGTTTGGGACACCGTGAAGCGCGACTTGTCGAGAATTGTGAGCAATTTGAAGCTTGTGGTGTTCCCCAACCCGTATCGTGAGGACCCGGGAAAGGCTCTGAGGGATTGGGATCTCTGGGGACCTTTCTTCTTCATTGTGTTCTTGGGTCTCACTCTTTCCTGGTCTGCATCTGTCAAAAAGTCTGAGGTTTTTGCTGTTGCTTTTGCTGTGCTTGCTGCCGGTGCTGTAATTTTGACCTTGAATGTGCTCCTACTGGGTGGACACATAATATTCTTCCAGAGCCTGAGTCTTCTGGGTTATTGCTTATTTCCTCTGGACATTGGAGCTCTAATCTGTATGGTAAAGGACAATGTGATATTGAAGGTGGTTGTGGTCAGCGTAACATTGGCTTGGAGTTCTTGGGCTGCATATCCTTTCATGAGTTCAGCAGTCAACCCCAGGAGAAAAGCCCTCGCACTTTACCCTGTTTTCCTACTGTATGTATCTGTTGGTTTTCTCATTATTGCCATCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0005802 GO:0012505 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yip1

Protein Analysis

280

Amino Acids

29.91

Weight (kDa)

8.53

Isoelectric Point (pI)

59.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18840 AT4G30260 AT4G30260 AT4G30260
fragaria_vesca	FvH4_4g09840 FvH4_4g09840
malus_domestica	MD13G1256000.v1.1 MD13G1256300.v1.1
prunus_persica	Prupe.1G086600_v2.0.a1
pyrus_communis	pycom13g22680 pycom13g22700
rosa_chinensis	RchiOBHm_Chr4g0402611 RchiOBHm_Chr4g0439321
rosa_laevigata	RLG00000009061 RLG00000029975 RLG00000030249
rosa_multiflora	Rmu_sc0013411.1_g000013
rosa_roxburghii	Rroxscaffold_3G00237110 Rroxscaffold_5G00347330
rosa_rugosa	Rorug01G0138600.1 Rorug04G0037100
rosa_samantha	Rh4AG114600 Rh4BG107000 Rh4DG106900 Rh6BG193500
rosa_wichuraiana	Rw4G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	31
AccII	CGCG	2 cut(s)	18, 345
AciI	CCGC	8 cut(s)	29, 117, 188, 191, 224, 245, 258, 302
AclWI	GGATC	2 cut(s)	142, 441
AfiI	CCNNNNNNNGG	2 cut(s)	294, 415
AgsI	TTSAA	3 cut(s)	373, 565, 685
AjnI	CCWGG	2 cut(s)	482, 761
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	3 cut(s)	197, 376, 650
AluI	AGCT	3 cut(s)	197, 376, 650
Alw21I	GWGCWC	2 cut(s)	573, 652
Alw26I	GTCTC	2 cut(s)	160, 476
AlwI	GGATC	2 cut(s)	142, 441
AlwNI	CAGNNNCTG	1 cut(s)	607
Ama87I	CYCGRG	3 cut(s)	138, 271, 409
AoxI	GGCC	3 cut(s)	97, 237, 268
ApaI	GGGCCC	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	539, 728
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	7 cut(s)	97, 98, 238, 269, 297, 406, 443
AsuC2I	CCSGG	6 cut(s)	236, 272, 273, 289, 410, 411
AvaI	CYCGRG	3 cut(s)	138, 271, 409
AvaII	GGWCC	3 cut(s)	297, 406, 443
BaeGI	GKGCMC	1 cut(s)	101
BanII	GRGCYC	3 cut(s)	101, 324, 652
BarI	GAAGNNNNNNTAC	2 cut(s)	268, 300
BbsI	GAAGAC	1 cut(s)	605
Bbv12I	GWGCWC	2 cut(s)	573, 652
BbvI	GCAGC	2 cut(s)	526, 715
BccI	CCATC	2 cut(s)	235, 839
BceAI	ACGGC	2 cut(s)	151, 283
BciT130I	CCWGG	2 cut(s)	484, 763
BcnI	CCSGG	6 cut(s)	236, 272, 273, 289, 410, 411
BcoDI	GTCTC	2 cut(s)	160, 476
BisI	GCNGC	4 cut(s)	191, 224, 540, 729
BlsI	GCNGC	4 cut(s)	192, 225, 541, 730
Bme1390I	CCNGG	8 cut(s)	236, 272, 273, 289, 410, 411, 484, 763
Bme18I	GGWCC	3 cut(s)	297, 406, 443
BmeT110I	CYCGRG	3 cut(s)	138, 271, 409
BmgT120I	GGNCC	7 cut(s)	97, 98, 238, 269, 297, 406, 443
BmiI	GGNNCC	8 cut(s)	99, 100, 240, 298, 299, 321, 408, 444
BmrFI	CCNGG	8 cut(s)	236, 272, 273, 289, 410, 411, 484, 763
BmrI	ACTGGG	1 cut(s)	587
BmsI	GCATC	1 cut(s)	500
BmuI	ACTGGG	1 cut(s)	587
BpiI	GAAGAC	1 cut(s)	605
BpuMI	CCSGG	6 cut(s)	236, 272, 273, 289, 410, 411
Bsa29I	ATCGAT	1 cut(s)	834
BsaBI	GATNNNNATC	1 cut(s)	432
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	3 cut(s)	271, 409, 761
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 415
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	2 cut(s)	484, 763
BseCI	ATCGAT	1 cut(s)	834
BseDI	CCNNGG	3 cut(s)	271, 409, 761
BseGI	GGATG	2 cut(s)	158, 171
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	2 cut(s)	294, 415
BseMII	CTCAG	3 cut(s)	413, 498, 599
BseNI	ACTGG	1 cut(s)	582
BseRI	GAGGAG	1 cut(s)	199
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	526, 715
Bsh1236I	CGCG	2 cut(s)	18, 345
BshFI	GGCC	3 cut(s)	99, 239, 270
BshVI	ATCGAT	1 cut(s)	834
BsiHKAI	GWGCWC	2 cut(s)	573, 652
BsiHKCI	CYCGRG	3 cut(s)	138, 271, 409
BsiSI	CCGG	5 cut(s)	236, 272, 288, 410, 543
BslFI	GGGAC	4 cut(s)	218, 283, 344, 456
BslI	CCNNNNNNNGG	2 cut(s)	294, 415
BsmAI	GTCTC	2 cut(s)	160, 476
BsmBI	CGTCTC	1 cut(s)	160
BsmFI	GGGAC	4 cut(s)	218, 283, 344, 456
BsnI	GGCC	3 cut(s)	99, 239, 270
Bso31I	GGTCTC	1 cut(s)	476
BsoBI	CYCGRG	3 cut(s)	138, 271, 409
Bsp120I	GGGCCC	1 cut(s)	97
Bsp1286I	GDGCHC	4 cut(s)	101, 324, 573, 652
Bsp143I	GATC	3 cut(s)	63, 147, 433
BspACI	CCGC	8 cut(s)	29, 117, 188, 191, 224, 245, 258, 302
BspANI	GGCC	3 cut(s)	99, 239, 270
BspCNI	CTCAG	3 cut(s)	414, 499, 600
BspDI	ATCGAT	1 cut(s)	834
BspFNI	CGCG	2 cut(s)	18, 345
BspHI	TCATGA	1 cut(s)	741
BspLI	GGNNCC	8 cut(s)	99, 100, 240, 298, 299, 321, 408, 444
BspPI	GGATC	2 cut(s)	142, 441
BspTNI	GGTCTC	1 cut(s)	476
BsrBI	CCGCTC	1 cut(s)	31
BsrFI	RCCGGY	1 cut(s)	542
BsrI	ACTGG	1 cut(s)	582
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	3 cut(s)	271, 409, 761
BssMI	GATC	3 cut(s)	63, 147, 433
Bst2UI	CCWGG	2 cut(s)	484, 763
Bst4CI	ACNGT	4 cut(s)	25, 109, 337, 801
BstC8I	GCNNGC	3 cut(s)	85, 195, 537
BstDEI	CTNAG	3 cut(s)	422, 507, 608
BstF5I	GGATG	2 cut(s)	158, 171
BstFNI	CGCG	2 cut(s)	18, 345
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	3 cut(s)	66, 150, 436
BstMAI	GTCTC	2 cut(s)	160, 476
BstMBI	GATC	3 cut(s)	63, 147, 433
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 310, 319, 536, 545
BstNI	CCWGG	2 cut(s)	484, 763
BstSCI	CCNGG	8 cut(s)	234, 270, 271, 287, 408, 409, 482, 761
BstSLI	GKGCMC	1 cut(s)	101
BstUI	CGCG	2 cut(s)	18, 345
BstV1I	GCAGC	2 cut(s)	526, 715
BstV2I	GAAGAC	1 cut(s)	605
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	834
BsuRI	GGCC	3 cut(s)	99, 239, 270
BsuTUI	ATCGAT	1 cut(s)	834
BtsCI	GGATG	2 cut(s)	158, 171
Cac8I	GCNNGC	3 cut(s)	85, 195, 537
CaiI	CAGNNNCTG	1 cut(s)	607
CciI	TCATGA	1 cut(s)	741
CfoI	GCGC	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	7 cut(s)	97, 98, 238, 269, 297, 406, 443
Cfr9I	CCCGGG	2 cut(s)	271, 409
ClaI	ATCGAT	1 cut(s)	834
CseI	GACGC	1 cut(s)	76
CviAII	CATG	1 cut(s)	742
DdeI	CTNAG	3 cut(s)	422, 507, 608
DpnI	GATC	3 cut(s)	65, 149, 435
DpnII	GATC	3 cut(s)	63, 147, 433
EciI	GGCGGA	1 cut(s)	247
Ecl136II	GAGCTC	1 cut(s)	650
Eco24I	GRGCYC	3 cut(s)	101, 324, 652
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	3 cut(s)	297, 406, 443
Eco53kI	GAGCTC	1 cut(s)	650
Eco88I	CYCGRG	3 cut(s)	138, 271, 409
EcoICRI	GAGCTC	1 cut(s)	650
EcoO109I	RGGNCCY	4 cut(s)	98, 297, 406, 443
EcoRII	CCWGG	2 cut(s)	482, 761
EcoT38I	GRGCYC	3 cut(s)	101, 324, 652
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	1 cut(s)	745
FaiI	YATR	5 cut(s)	590, 662, 733, 743, 804
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	4 cut(s)	218, 283, 344, 456
FatI	CATG	1 cut(s)	741
FauI	CCCGC	4 cut(s)	124, 195, 252, 309
Fnu4HI	GCNGC	4 cut(s)	191, 224, 540, 729
FokI	GGATG	2 cut(s)	145, 158
FriOI	GRGCYC	3 cut(s)	101, 324, 652
Fsp4HI	GCNGC	4 cut(s)	191, 224, 540, 729
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	4 cut(s)	191, 224, 540, 729
HaeIII	GGCC	3 cut(s)	99, 239, 270
HapII	CCGG	5 cut(s)	236, 272, 288, 410, 543
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	1 cut(s)	745
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	1 cut(s)	610
HpaII	CCGG	5 cut(s)	236, 272, 288, 410, 543
Hpy166II	GTNNAC	2 cut(s)	584, 757
Hpy188I	TCNGA	5 cut(s)	13, 52, 135, 423, 508
Hpy188III	TCNNGA	5 cut(s)	354, 401, 601, 638, 742
Hpy8I	GTNNAC	2 cut(s)	584, 757
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	3 cut(s)	48, 294, 679
HpyCH4III	ACNGT	4 cut(s)	25, 109, 337, 801
HpyCH4V	TGCA	2 cut(s)	491, 731
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 310, 319, 536, 545
HpyF3I	CTNAG	3 cut(s)	422, 507, 608
Hsp92II	CATG	1 cut(s)	745
HspAI	GCGC	1 cut(s)	343
KflI	GGGWCCC	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	63, 147, 433
LmnI	GCTCC	5 cut(s)	36, 202, 319, 576, 647
Lsp1109I	GCAGC	2 cut(s)	526, 715
LweI	GCATC	1 cut(s)	500
MaeIII	GTNAC	1 cut(s)	703
MalI	GATC	3 cut(s)	65, 149, 435
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	3 cut(s)	63, 147, 433
MboII	GAAGA	4 cut(s)	442, 445, 589, 605
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	4 cut(s)	101, 324, 573, 652
MluCI	AATT	3 cut(s)	357, 367, 552
MlyI	GAGTC	1 cut(s)	619
MmeI	TCCRAC	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	107
MspI	CCGG	5 cut(s)	236, 272, 288, 410, 543
MspR9I	CCNGG	8 cut(s)	236, 272, 273, 289, 410, 411, 484, 763
MvaI	CCWGG	2 cut(s)	484, 763
MvnI	CGCG	2 cut(s)	18, 345
MwoI	GCNNNNNNNGC	5 cut(s)	203, 310, 319, 536, 545
NciI	CCSGG	6 cut(s)	236, 272, 273, 289, 410, 411
NdeII	GATC	3 cut(s)	63, 147, 433
NlaIII	CATG	1 cut(s)	745
NlaIV	GGNNCC	8 cut(s)	99, 100, 240, 298, 299, 321, 408, 444
OliI	CACNNNNGTG	1 cut(s)	107
PagI	TCATGA	1 cut(s)	741
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PkrI	GCNGC	4 cut(s)	192, 225, 541, 730
PleI	GAGTC	1 cut(s)	618
PpsI	GAGTC	1 cut(s)	618
PpuMI	RGGWCCY	3 cut(s)	297, 406, 443
Psp124BI	GAGCTC	1 cut(s)	652
Psp5II	RGGWCCY	3 cut(s)	297, 406, 443
Psp6I	CCWGG	2 cut(s)	482, 761
PspGI	CCWGG	2 cut(s)	482, 761
PspN4I	GGNNCC	8 cut(s)	99, 100, 240, 298, 299, 321, 408, 444
PspOMI	GGGCCC	1 cut(s)	97
PspPI	GGNCC	7 cut(s)	97, 98, 238, 269, 297, 406, 443
PspPPI	RGGWCCY	3 cut(s)	297, 406, 443
PstNI	CAGNNNCTG	1 cut(s)	607
PsuI	RGATCY	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	652
SatI	GCNGC	4 cut(s)	191, 224, 540, 729
Sau3AI	GATC	3 cut(s)	63, 147, 433
Sau96I	GGNCC	7 cut(s)	97, 98, 238, 269, 297, 406, 443
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	8 cut(s)	236, 272, 273, 289, 410, 411, 484, 763
SduI	GDGCHC	4 cut(s)	101, 324, 573, 652
SetI	ASST	9 cut(s)	75, 186, 199, 378, 448, 513, 563, 652, 690
SfaNI	GCATC	1 cut(s)	500
SinI	GGWCC	3 cut(s)	297, 406, 443
SmaI	CCCGGG	2 cut(s)	273, 411
SmiMI	CAYNNNNRTG	1 cut(s)	107
Sse9I	AATT	3 cut(s)	357, 367, 552
SsiI	CCGC	8 cut(s)	29, 117, 188, 191, 224, 245, 258, 302
SspI	AATATT	1 cut(s)	594
SstI	GAGCTC	1 cut(s)	652
StyD4I	CCNGG	8 cut(s)	234, 270, 271, 287, 408, 409, 482, 761
TaaI	ACNGT	4 cut(s)	25, 109, 337, 801
TaqI	TCGA	5 cut(s)	57, 66, 146, 353, 834
TasI	AATT	3 cut(s)	357, 367, 552
TauI	GCSGC	2 cut(s)	193, 226
TseI	GCWGC	2 cut(s)	539, 728
TspDTI	ATGAA	3 cut(s)	160, 445, 730
TspGWI	ACGGA	1 cut(s)	332
TspMI	CCCGGG	2 cut(s)	271, 409
VpaK11BI	GGWCC	3 cut(s)	297, 406, 443
XmaI	CCCGGG	2 cut(s)	271, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.