transcription, DNA-templated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840 |
| fragaria_vesca | FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 |
| malus_domestica | MD02G1057600.v1.1 MD15G1192000.v1.1 |
| prunus_persica | Prupe.7G225200_v2.0.a1 |
| pyrus_communis | pycom02g04670 pycom15g17180 |
| rosa_chinensis | RchiOBHm_Chr2g0091291 |
| rosa_laevigata | RLG00000016209 |
| rosa_multiflora | Rmu_sc0002270.1_g000044 |
| rosa_roxburghii | Rroxscaffold_2G00150250 |
| rosa_rugosa | Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100 |
| rosa_samantha | Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800 |
| rosa_wichuraiana | Rw2G004870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 210 |
| AatII | GACGTC | 1 cut(s) | 68 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 354 |
| AccI | GTMKAC | 1 cut(s) | 22 |
| AciI | CCGC | 2 cut(s) | 47, 451 |
| AclWI | GGATC | 5 cut(s) | 46, 425, 438, 475, 496 |
| AcyI | GRCGYC | 1 cut(s) | 65 |
| AfaI | GTAC | 2 cut(s) | 10, 321 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 137, 354, 368, 484 |
| AgsI | TTSAA | 1 cut(s) | 202 |
| AluBI | AGCT | 4 cut(s) | 198, 354, 366, 438 |
| AluI | AGCT | 4 cut(s) | 198, 354, 366, 438 |
| Alw26I | GTCTC | 1 cut(s) | 63 |
| AlwI | GGATC | 5 cut(s) | 46, 425, 438, 475, 496 |
| Ama87I | CYCGRG | 1 cut(s) | 484 |
| ApeKI | GCWGC | 1 cut(s) | 127 |
| AsuHPI | GGTGA | 1 cut(s) | 400 |
| AvaI | CYCGRG | 1 cut(s) | 484 |
| AxyI | CCTNAGG | 1 cut(s) | 228 |
| BamHI | GGATCC | 1 cut(s) | 430 |
| BbvI | GCAGC | 1 cut(s) | 139 |
| BccI | CCATC | 2 cut(s) | 277, 307 |
| BceAI | ACGGC | 1 cut(s) | 385 |
| BciVI | GTATCC | 1 cut(s) | 234 |
| BcoDI | GTCTC | 1 cut(s) | 63 |
| BfuI | GTATCC | 1 cut(s) | 234 |
| BisI | GCNGC | 2 cut(s) | 47, 128 |
| BlsI | GCNGC | 2 cut(s) | 48, 129 |
| BmcAI | AGTACT | 1 cut(s) | 10 |
| BmeT110I | CYCGRG | 1 cut(s) | 484 |
| BmiI | GGNNCC | 4 cut(s) | 112, 285, 399, 432 |
| BmsI | GCATC | 2 cut(s) | 234, 381 |
| BpmI | CTGGAG | 1 cut(s) | 66 |
| BsaBI | GATNNNNATC | 1 cut(s) | 259 |
| BsaHI | GRCGYC | 1 cut(s) | 65 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 137, 354, 368, 484 |
| Bse21I | CCTNAGG | 1 cut(s) | 228 |
| Bse8I | GATNNNNATC | 1 cut(s) | 259 |
| BseGI | GGATG | 4 cut(s) | 68, 241, 249, 260 |
| BseJI | GATNNNNATC | 1 cut(s) | 259 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 137, 354, 368, 484 |
| BseMII | CTCAG | 1 cut(s) | 242 |
| BseXI | GCAGC | 1 cut(s) | 139 |
| BsiHKCI | CYCGRG | 1 cut(s) | 484 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 137, 354, 368, 484 |
| BsmAI | GTCTC | 1 cut(s) | 63 |
| BsmBI | CGTCTC | 1 cut(s) | 63 |
| BsoBI | CYCGRG | 1 cut(s) | 484 |
| Bsp143I | GATC | 5 cut(s) | 38, 328, 430, 467, 488 |
| BspACI | CCGC | 2 cut(s) | 47, 451 |
| BspCNI | CTCAG | 1 cut(s) | 241 |
| BspLI | GGNNCC | 4 cut(s) | 112, 285, 399, 432 |
| BspPI | GGATC | 5 cut(s) | 46, 425, 438, 475, 496 |
| BssMI | GATC | 5 cut(s) | 38, 328, 430, 467, 488 |
| BssNI | GRCGYC | 1 cut(s) | 65 |
| Bst4CI | ACNGT | 1 cut(s) | 206 |
| Bst6I | CTCTTC | 2 cut(s) | 79, 88 |
| BstACI | GRCGYC | 1 cut(s) | 65 |
| BstDEI | CTNAG | 2 cut(s) | 228, 376 |
| BstF5I | GGATG | 4 cut(s) | 68, 241, 249, 260 |
| BstKTI | GATC | 5 cut(s) | 41, 331, 433, 470, 491 |
| BstMAI | GTCTC | 1 cut(s) | 63 |
| BstMBI | GATC | 5 cut(s) | 38, 328, 430, 467, 488 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 127 |
| BstV1I | GCAGC | 1 cut(s) | 139 |
| BstX2I | RGATCY | 2 cut(s) | 38, 430 |
| BstYI | RGATCY | 2 cut(s) | 38, 430 |
| Bsu36I | CCTNAGG | 1 cut(s) | 228 |
| BsuI | GTATCC | 1 cut(s) | 234 |
| BtsCI | GGATG | 4 cut(s) | 68, 241, 249, 260 |
| Csp6I | GTAC | 2 cut(s) | 9, 320 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 15, 50 |
| CviAII | CATG | 2 cut(s) | 176, 349 |
| CviJI | RGCY | 9 cut(s) | 111, 121, 130, 198, 284, 354, 366, 384, 438 |
| CviKI_1 | RGCY | 9 cut(s) | 111, 121, 130, 198, 284, 354, 366, 384, 438 |
| CviQI | GTAC | 2 cut(s) | 9, 320 |
| DdeI | CTNAG | 2 cut(s) | 228, 376 |
| DpnI | GATC | 5 cut(s) | 40, 330, 432, 469, 490 |
| DpnII | GATC | 5 cut(s) | 38, 328, 430, 467, 488 |
| Eam1104I | CTCTTC | 2 cut(s) | 79, 88 |
| EarI | CTCTTC | 2 cut(s) | 79, 88 |
| EciI | GGCGGA | 1 cut(s) | 466 |
| Eco81I | CCTNAGG | 1 cut(s) | 228 |
| Eco88I | CYCGRG | 1 cut(s) | 484 |
| Esp3I | CGTCTC | 1 cut(s) | 63 |
| FaeI | CATG | 2 cut(s) | 179, 352 |
| FaiI | YATR | 7 cut(s) | 177, 210, 266, 291, 308, 324, 350 |
| FatI | CATG | 2 cut(s) | 175, 348 |
| FblI | GTMKAC | 1 cut(s) | 22 |
| Fnu4HI | GCNGC | 2 cut(s) | 47, 128 |
| FokI | GGATG | 4 cut(s) | 55, 247, 248, 256 |
| Fsp4HI | GCNGC | 2 cut(s) | 47, 128 |
| GluI | GCNGC | 2 cut(s) | 47, 128 |
| GsuI | CTGGAG | 1 cut(s) | 66 |
| Hin1I | GRCGYC | 1 cut(s) | 65 |
| Hin1II | CATG | 2 cut(s) | 179, 352 |
| HinfI | GANTC | 2 cut(s) | 358, 474 |
| HphI | GGTGA | 1 cut(s) | 400 |
| Hpy166II | GTNNAC | 2 cut(s) | 23, 511 |
| Hpy188I | TCNGA | 2 cut(s) | 63, 115 |
| Hpy188III | TCNNGA | 4 cut(s) | 230, 471, 486, 503 |
| Hpy8I | GTNNAC | 2 cut(s) | 23, 511 |
| Hpy99I | CGWCG | 1 cut(s) | 67 |
| HpyAV | CCTTC | 2 cut(s) | 60, 225 |
| HpyCH4III | ACNGT | 1 cut(s) | 206 |
| HpyCH4IV | ACGT | 2 cut(s) | 30, 65 |
| HpyCH4V | TGCA | 2 cut(s) | 192, 247 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 127 |
| HpyF3I | CTNAG | 2 cut(s) | 228, 376 |
| HpySE526I | ACGT | 2 cut(s) | 30, 65 |
| Hsp92I | GRCGYC | 1 cut(s) | 65 |
| Hsp92II | CATG | 2 cut(s) | 179, 352 |
| Kzo9I | GATC | 5 cut(s) | 38, 328, 430, 467, 488 |
| LmnI | GCTCC | 2 cut(s) | 116, 289 |
| LpnPI | CCDG | 4 cut(s) | 96, 215, 340, 424 |
| Lsp1109I | GCAGC | 1 cut(s) | 139 |
| LweI | GCATC | 2 cut(s) | 234, 381 |
| MaeII | ACGT | 2 cut(s) | 30, 65 |
| MaeIII | GTNAC | 1 cut(s) | 528 |
| MalI | GATC | 5 cut(s) | 40, 330, 432, 469, 490 |
| MboI | GATC | 5 cut(s) | 38, 328, 430, 467, 488 |
| MboII | GAAGA | 8 cut(s) | 33, 66, 69, 105, 112, 115, 175, 270 |
| MfeI | CAATTG | 1 cut(s) | 155 |
| MflI | RGATCY | 2 cut(s) | 38, 430 |
| MluCI | AATT | 1 cut(s) | 155 |
| MmeI | TCCRAC | 2 cut(s) | 86, 502 |
| MnlI | CCTC | 9 cut(s) | 82, 89, 131, 226, 234, 237, 245, 421, 499 |
| MseI | TTAA | 1 cut(s) | 422 |
| MunI | CAATTG | 1 cut(s) | 155 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 127 |
| NdeII | GATC | 5 cut(s) | 38, 328, 430, 467, 488 |
| NlaIII | CATG | 2 cut(s) | 179, 352 |
| NlaIV | GGNNCC | 4 cut(s) | 112, 285, 399, 432 |
| NmuCI | GTSAC | 1 cut(s) | 528 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 62 |
| PfeI | GAWTC | 2 cut(s) | 358, 474 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 354 |
| PkrI | GCNGC | 2 cut(s) | 48, 129 |
| PsiI | TTATAA | 1 cut(s) | 210 |
| PspN4I | GGNNCC | 4 cut(s) | 112, 285, 399, 432 |
| PsuI | RGATCY | 2 cut(s) | 38, 430 |
| RsaI | GTAC | 2 cut(s) | 10, 321 |
| RsaNI | GTAC | 2 cut(s) | 9, 320 |
| SaqAI | TTAA | 1 cut(s) | 422 |
| SatI | GCNGC | 2 cut(s) | 47, 128 |
| Sau3AI | GATC | 5 cut(s) | 38, 328, 430, 467, 488 |
| ScaI | AGTACT | 1 cut(s) | 10 |
| SetI | ASST | 8 cut(s) | 33, 68, 142, 200, 356, 368, 440, 510 |
| SfaNI | GCATC | 2 cut(s) | 234, 381 |
| Sse9I | AATT | 1 cut(s) | 155 |
| SsiI | CCGC | 2 cut(s) | 47, 451 |
| TaaI | ACNGT | 1 cut(s) | 206 |
| TaiI | ACGT | 2 cut(s) | 33, 68 |
| TaqI | TCGA | 2 cut(s) | 440, 491 |
| TasI | AATT | 1 cut(s) | 155 |
| TatI | WGTACW | 2 cut(s) | 8, 319 |
| TauI | GCSGC | 1 cut(s) | 49 |
| TfiI | GAWTC | 2 cut(s) | 358, 474 |
| Tru1I | TTAA | 1 cut(s) | 422 |
| Tru9I | TTAA | 1 cut(s) | 422 |
| TseFI | GTSAC | 1 cut(s) | 528 |
| TseI | GCWGC | 1 cut(s) | 127 |
| Tsp45I | GTSAC | 1 cut(s) | 528 |
| TspDTI | ATGAA | 2 cut(s) | 42, 249 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 354 |
| XmiI | GTMKAC | 1 cut(s) | 22 |
| ZraI | GACGTC | 1 cut(s) | 66 |
| ZrmI | AGTACT | 1 cut(s) | 10 |