transcription, DNA-templated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840 |
| fragaria_vesca | FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 |
| malus_domestica | MD02G1057600.v1.1 MD15G1192000.v1.1 |
| prunus_persica | Prupe.7G225200_v2.0.a1 |
| pyrus_communis | pycom02g04670 pycom15g17180 |
| rosa_chinensis | RchiOBHm_Chr2g0091291 |
| rosa_laevigata | RLG00000016209 |
| rosa_multiflora | Rmu_sc0002270.1_g000044 |
| rosa_roxburghii | Rroxscaffold_2G00150250 |
| rosa_rugosa | Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100 |
| rosa_samantha | Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800 |
| rosa_wichuraiana | Rw2G004870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 438 |
| AciI | CCGC | 1 cut(s) | 506 |
| AcoI | YGGCCR | 1 cut(s) | 181 |
| AcyI | GRCGYC | 1 cut(s) | 435 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 32, 140 |
| AgsI | TTSAA | 3 cut(s) | 93, 420, 570 |
| AluBI | AGCT | 4 cut(s) | 266, 558, 607, 619 |
| AluI | AGCT | 4 cut(s) | 266, 558, 607, 619 |
| Alw21I | GWGCWC | 1 cut(s) | 621 |
| Alw26I | GTCTC | 2 cut(s) | 242, 484 |
| AoxI | GGCC | 1 cut(s) | 181 |
| AsuHPI | GGTGA | 3 cut(s) | 194, 229, 377 |
| BalI | TGGCCA | 1 cut(s) | 183 |
| BanII | GRGCYC | 1 cut(s) | 621 |
| BbsI | GAAGAC | 1 cut(s) | 66 |
| Bbv12I | GWGCWC | 1 cut(s) | 621 |
| BccI | CCATC | 4 cut(s) | 349, 423, 458, 556 |
| BclI | TGATCA | 1 cut(s) | 40 |
| BcoDI | GTCTC | 2 cut(s) | 242, 484 |
| BfaI | CTAG | 1 cut(s) | 608 |
| BmiI | GGNNCC | 1 cut(s) | 24 |
| BpiI | GAAGAC | 1 cut(s) | 66 |
| BpmI | CTGGAG | 1 cut(s) | 495 |
| BpuEI | CTTGAG | 1 cut(s) | 585 |
| BsaHI | GRCGYC | 1 cut(s) | 435 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 32, 140 |
| Bse1I | ACTGG | 1 cut(s) | 512 |
| BseGI | GGATG | 2 cut(s) | 284, 305 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 32, 140 |
| BseMII | CTCAG | 3 cut(s) | 149, 539, 634 |
| BseNI | ACTGG | 1 cut(s) | 512 |
| BseRI | GAGGAG | 4 cut(s) | 63, 66, 78, 81 |
| BshFI | GGCC | 1 cut(s) | 183 |
| BsiHKAI | GWGCWC | 1 cut(s) | 621 |
| BslFI | GGGAC | 1 cut(s) | 446 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 32, 140 |
| BsmAI | GTCTC | 2 cut(s) | 242, 484 |
| BsmFI | GGGAC | 1 cut(s) | 446 |
| BsnI | GGCC | 1 cut(s) | 183 |
| Bsp1286I | GDGCHC | 1 cut(s) | 621 |
| Bsp143I | GATC | 2 cut(s) | 40, 168 |
| BspACI | CCGC | 1 cut(s) | 506 |
| BspANI | GGCC | 1 cut(s) | 183 |
| BspCNI | CTCAG | 3 cut(s) | 148, 538, 633 |
| BspHI | TCATGA | 1 cut(s) | 351 |
| BspLI | GGNNCC | 1 cut(s) | 24 |
| BsrI | ACTGG | 1 cut(s) | 512 |
| BssMI | GATC | 2 cut(s) | 40, 168 |
| BssNI | GRCGYC | 1 cut(s) | 435 |
| Bst4CI | ACNGT | 1 cut(s) | 443 |
| Bst6I | CTCTTC | 2 cut(s) | 101, 301 |
| BstACI | GRCGYC | 1 cut(s) | 435 |
| BstDEI | CTNAG | 3 cut(s) | 135, 525, 620 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 138 |
| BstF5I | GGATG | 2 cut(s) | 284, 305 |
| BstKTI | GATC | 2 cut(s) | 43, 171 |
| BstMAI | GTCTC | 2 cut(s) | 242, 484 |
| BstMBI | GATC | 2 cut(s) | 40, 168 |
| BstV2I | GAAGAC | 1 cut(s) | 66 |
| BsuRI | GGCC | 1 cut(s) | 183 |
| BtsCI | GGATG | 2 cut(s) | 284, 305 |
| CciI | TCATGA | 1 cut(s) | 351 |
| CviAII | CATG | 4 cut(s) | 31, 179, 352, 484 |
| DdeI | CTNAG | 3 cut(s) | 135, 525, 620 |
| DpnI | GATC | 2 cut(s) | 42, 170 |
| DpnII | GATC | 2 cut(s) | 40, 168 |
| EaeI | YGGCCR | 1 cut(s) | 181 |
| Eam1104I | CTCTTC | 2 cut(s) | 101, 301 |
| EarI | CTCTTC | 2 cut(s) | 101, 301 |
| EciI | GGCGGA | 1 cut(s) | 495 |
| Ecl136II | GAGCTC | 1 cut(s) | 619 |
| Eco24I | GRGCYC | 1 cut(s) | 621 |
| Eco53kI | GAGCTC | 1 cut(s) | 619 |
| EcoICRI | GAGCTC | 1 cut(s) | 619 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 138 |
| EcoT38I | GRGCYC | 1 cut(s) | 621 |
| FaeI | CATG | 4 cut(s) | 34, 182, 355, 487 |
| FaqI | GGGAC | 1 cut(s) | 446 |
| FatI | CATG | 4 cut(s) | 30, 178, 351, 483 |
| FbaI | TGATCA | 1 cut(s) | 40 |
| FokI | GGATG | 2 cut(s) | 271, 292 |
| FriOI | GRGCYC | 1 cut(s) | 621 |
| FspBI | CTAG | 1 cut(s) | 608 |
| GsuI | CTGGAG | 1 cut(s) | 495 |
| HaeIII | GGCC | 1 cut(s) | 183 |
| Hin1I | GRCGYC | 1 cut(s) | 435 |
| Hin1II | CATG | 4 cut(s) | 34, 182, 355, 487 |
| HinfI | GANTC | 3 cut(s) | 521, 587, 624 |
| HphI | GGTGA | 3 cut(s) | 194, 229, 377 |
| Hpy166II | GTNNAC | 1 cut(s) | 439 |
| Hpy188I | TCNGA | 6 cut(s) | 118, 138, 173, 579, 586, 623 |
| Hpy188III | TCNNGA | 2 cut(s) | 352, 602 |
| Hpy8I | GTNNAC | 1 cut(s) | 439 |
| HpyAV | CCTTC | 1 cut(s) | 506 |
| HpyCH4III | ACNGT | 1 cut(s) | 443 |
| HpyCH4IV | ACGT | 1 cut(s) | 435 |
| HpyCH4V | TGCA | 3 cut(s) | 195, 259, 475 |
| HpyF3I | CTNAG | 3 cut(s) | 135, 525, 620 |
| HpySE526I | ACGT | 1 cut(s) | 435 |
| Hsp92I | GRCGYC | 1 cut(s) | 435 |
| Hsp92II | CATG | 4 cut(s) | 34, 182, 355, 487 |
| Ksp22I | TGATCA | 1 cut(s) | 40 |
| Kzo9I | GATC | 2 cut(s) | 40, 168 |
| LmnI | GCTCC | 3 cut(s) | 6, 22, 616 |
| LpnPI | CCDG | 1 cut(s) | 525 |
| MaeI | CTAG | 1 cut(s) | 608 |
| MaeII | ACGT | 1 cut(s) | 435 |
| MaeIII | GTNAC | 1 cut(s) | 593 |
| MalI | GATC | 2 cut(s) | 42, 170 |
| MboI | GATC | 2 cut(s) | 40, 168 |
| MfeI | CAATTG | 2 cut(s) | 158, 185 |
| MhlI | GDGCHC | 1 cut(s) | 621 |
| MlsI | TGGCCA | 1 cut(s) | 183 |
| MluCI | AATT | 5 cut(s) | 112, 158, 185, 232, 403 |
| MluNI | TGGCCA | 1 cut(s) | 183 |
| MlyI | GAGTC | 2 cut(s) | 515, 618 |
| Mox20I | TGGCCA | 1 cut(s) | 183 |
| MscI | TGGCCA | 1 cut(s) | 183 |
| MseI | TTAA | 1 cut(s) | 634 |
| MslI | CAYNNNNRTG | 2 cut(s) | 353, 444 |
| Msp20I | TGGCCA | 1 cut(s) | 183 |
| MunI | CAATTG | 2 cut(s) | 158, 185 |
| NdeII | GATC | 2 cut(s) | 40, 168 |
| NlaIII | CATG | 4 cut(s) | 34, 182, 355, 487 |
| NlaIV | GGNNCC | 1 cut(s) | 24 |
| NmuCI | GTSAC | 1 cut(s) | 593 |
| PagI | TCATGA | 1 cut(s) | 351 |
| PfeI | GAWTC | 1 cut(s) | 587 |
| PleI | GAGTC | 2 cut(s) | 515, 618 |
| PpsI | GAGTC | 2 cut(s) | 515, 618 |
| Psp124BI | GAGCTC | 1 cut(s) | 621 |
| PspN4I | GGNNCC | 1 cut(s) | 24 |
| RseI | CAYNNNNRTG | 2 cut(s) | 353, 444 |
| SacI | GAGCTC | 1 cut(s) | 621 |
| SaqAI | TTAA | 1 cut(s) | 634 |
| Sau3AI | GATC | 2 cut(s) | 40, 168 |
| SchI | GAGTC | 2 cut(s) | 515, 618 |
| SduI | GDGCHC | 1 cut(s) | 621 |
| SetI | ASST | 7 cut(s) | 136, 268, 438, 498, 560, 609, 621 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 353, 444 |
| SmlI | CTYRAG | 1 cut(s) | 600 |
| SmoI | CTYRAG | 1 cut(s) | 600 |
| Sse9I | AATT | 5 cut(s) | 112, 158, 185, 232, 403 |
| SsiI | CCGC | 1 cut(s) | 506 |
| SspMI | CTAG | 1 cut(s) | 608 |
| SstI | GAGCTC | 1 cut(s) | 621 |
| TaaI | ACNGT | 1 cut(s) | 443 |
| TaiI | ACGT | 1 cut(s) | 438 |
| TaqI | TCGA | 1 cut(s) | 560 |
| TasI | AATT | 5 cut(s) | 112, 158, 185, 232, 403 |
| TfiI | GAWTC | 1 cut(s) | 587 |
| Tru1I | TTAA | 1 cut(s) | 634 |
| Tru9I | TTAA | 1 cut(s) | 634 |
| TseFI | GTSAC | 1 cut(s) | 593 |
| Tsp45I | GTSAC | 1 cut(s) | 593 |
| TspDTI | ATGAA | 4 cut(s) | 75, 261, 294, 387 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 138 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 352 |
| XspI | CTAG | 1 cut(s) | 608 |
| ZraI | GACGTC | 1 cut(s) | 436 |