Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005797

Physical Location & Seq

Genomic Coordinates Forward (+)

4660873 .. 4663232

Gene Structure 2360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1057600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGGAGCACTTATTTTGGGGAGCCAAACATGGGAGGAGGTGGTGGTGGTTCTTCTTCTTCTTCTTCTTCAAGGAAAGGAAAGAAGAGTAATTCAGACAAGCCAAAACAACCCCAGAGAGGCCTTGGAGTGGCTCAATTGGAGAAGATCAGATTACACGGTCAAATGGGTTCCACTACTTATCACCCTTCCCTCCACTCTCCATACTACACTAGTTTCAACAACGAGGACACCAGAGTGCAAACAGCTTATTCGTCCCTACCATCATCATCTTTCTCTTCTTCACCATCCTCCACATCTTCCCCACTCTCTTATGGCTTCCACCCCAACATCATGATGGGCGGTCTTGTTGAATATGAAAGAGCAAACATGATATATGGTGGTGATCATAATTCCCAACTTAGTACAACAGCAGGATGGGACGTCATCTTAGACACCAAACATTTTGTGCAACCGAGCATGACCGGAGACCTTCTAAATCCACCTCCAGTAGAGGACTCTCAGCACAGGAAGAGCGGAAAACATAGAAGTAGCTCCATGGGCTCAAGCAGTCACAACTCTGAATCAAGTGACACCCAAGATCTAGATTTGGAGCTCAGACTCTCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

21.83

Weight (kDa)

6.75

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840
fragaria_vesca	FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660
malus_domestica	MD02G1057600.v1.1 MD15G1192000.v1.1
prunus_persica	Prupe.7G225200_v2.0.a1
pyrus_communis	pycom02g04670 pycom15g17180
rosa_chinensis	RchiOBHm_Chr2g0091291
rosa_laevigata	RLG00000016209
rosa_multiflora	Rmu_sc0002270.1_g000044
rosa_roxburghii	Rroxscaffold_2G00150250
rosa_rugosa	Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100
rosa_samantha	Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800
rosa_wichuraiana	Rw2G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	426
AccBSI	CCGCTC	1 cut(s)	516
AciI	CCGC	2 cut(s)	342, 516
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	3 cut(s)	32, 119, 130
AgsI	TTSAA	3 cut(s)	72, 220, 353
AhlI	ACTAGT	1 cut(s)	212
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	3 cut(s)	248, 534, 595
AluI	AGCT	3 cut(s)	248, 534, 595
Alw21I	GWGCWC	2 cut(s)	11, 597
Alw26I	GTCTC	1 cut(s)	462
AoxI	GGCC	1 cut(s)	121
AsuHPI	GGTGA	3 cut(s)	176, 276, 395
BanII	GRGCYC	2 cut(s)	545, 597
Bbv12I	GWGCWC	2 cut(s)	11, 597
BccI	CCATC	4 cut(s)	271, 295, 331, 411
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	462
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	2 cut(s)	213, 584
BglII	AGATCT	1 cut(s)	580
BmiI	GGNNCC	2 cut(s)	24, 172
BpmI	CTGGAG	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	529
BsaHI	GRCGYC	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	124, 537
BsaWI	WCCGGW	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 119, 130
Bse1I	ACTGG	1 cut(s)	488
BseDI	CCNNGG	2 cut(s)	124, 537
BseGI	GGATG	2 cut(s)	287, 422
BseLI	CCNNNNNNNGG	3 cut(s)	32, 119, 130
BseMII	CTCAG	2 cut(s)	515, 610
BseNI	ACTGG	1 cut(s)	488
BseRI	GAGGAG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	2 cut(s)	11, 597
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	2 cut(s)	241, 434
BslI	CCNNNNNNNGG	3 cut(s)	32, 119, 130
BsmAI	GTCTC	1 cut(s)	462
BsmFI	GGGAC	2 cut(s)	241, 434
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	462
Bsp1286I	GDGCHC	3 cut(s)	11, 545, 597
Bsp143I	GATC	3 cut(s)	147, 385, 580
Bsp19I	CCATGG	1 cut(s)	537
BspACI	CCGC	2 cut(s)	342, 516
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	2 cut(s)	514, 609
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	24, 172
BspQI	GCTCTTC	1 cut(s)	506
BspTNI	GGTCTC	1 cut(s)	462
BsrBI	CCGCTC	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	488
BssECI	CCNNGG	2 cut(s)	124, 537
BssMI	GATC	3 cut(s)	147, 385, 580
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	2 cut(s)	124, 537
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	3 cut(s)	80, 283, 506
BstACI	GRCGYC	1 cut(s)	423
BstDEI	CTNAG	4 cut(s)	401, 430, 501, 596
BstDSI	CCRYGG	1 cut(s)	537
BstF5I	GGATG	2 cut(s)	287, 422
BstKTI	GATC	3 cut(s)	150, 388, 583
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	3 cut(s)	147, 385, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	540
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	537
BtsCI	GGATG	2 cut(s)	287, 422
CciI	TCATGA	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	5 cut(s)	31, 334, 370, 460, 538
CviJI	RGCY	9 cut(s)	25, 103, 123, 134, 248, 318, 534, 543, 595
CviKI_1	RGCY	9 cut(s)	25, 103, 123, 134, 248, 318, 534, 543, 595
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	4 cut(s)	401, 430, 501, 596
DpnI	GATC	3 cut(s)	149, 387, 582
DpnII	GATC	3 cut(s)	147, 385, 580
Eam1104I	CTCTTC	3 cut(s)	80, 283, 506
EarI	CTCTTC	3 cut(s)	80, 283, 506
Ecl136II	GAGCTC	1 cut(s)	595
Eco130I	CCWWGG	2 cut(s)	124, 537
Eco147I	AGGCCT	1 cut(s)	123
Eco24I	GRGCYC	2 cut(s)	545, 597
Eco31I	GGTCTC	1 cut(s)	462
Eco53kI	GAGCTC	1 cut(s)	595
EcoICRI	GAGCTC	1 cut(s)	595
EcoT14I	CCWWGG	2 cut(s)	124, 537
EcoT38I	GRGCYC	2 cut(s)	545, 597
ErhI	CCWWGG	2 cut(s)	124, 537
FaeI	CATG	5 cut(s)	34, 337, 373, 463, 541
FaqI	GGGAC	2 cut(s)	241, 434
FatI	CATG	5 cut(s)	30, 333, 369, 459, 537
FbaI	TGATCA	1 cut(s)	385
FokI	GGATG	2 cut(s)	274, 429
FriOI	GRGCYC	2 cut(s)	545, 597
FspBI	CTAG	2 cut(s)	213, 584
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	465
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	5 cut(s)	34, 337, 373, 463, 541
HinfI	GANTC	3 cut(s)	497, 563, 600
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	3 cut(s)	176, 276, 395
Hpy188I	TCNGA	4 cut(s)	97, 152, 562, 599
Hpy188III	TCNNGA	2 cut(s)	334, 584
HpyAV	CCTTC	2 cut(s)	198, 482
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	2 cut(s)	241, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	540
HpyF3I	CTNAG	4 cut(s)	401, 430, 501, 596
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	5 cut(s)	34, 337, 373, 463, 541
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	147, 385, 580
LguI	GCTCTTC	1 cut(s)	506
LmnI	GCTCC	4 cut(s)	6, 22, 539, 592
LpnPI	CCDG	6 cut(s)	128, 247, 399, 478, 493, 501
MaeI	CTAG	2 cut(s)	213, 584
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	2 cut(s)	551, 569
MalI	GATC	3 cut(s)	149, 387, 582
MbiI	CCGCTC	1 cut(s)	516
MboI	GATC	3 cut(s)	147, 385, 580
MfeI	CAATTG	1 cut(s)	137
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	3 cut(s)	11, 545, 597
MluCI	AATT	3 cut(s)	91, 137, 391
MlyI	GAGTC	2 cut(s)	491, 594
MnlI	CCTC	8 cut(s)	29, 32, 113, 203, 220, 301, 487, 495
MslI	CAYNNNNRTG	2 cut(s)	236, 335
MspI	CCGG	1 cut(s)	465
MunI	CAATTG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	540
NcoI	CCATGG	1 cut(s)	537
NdeII	GATC	3 cut(s)	147, 385, 580
NlaIII	CATG	5 cut(s)	34, 337, 373, 463, 541
NlaIV	GGNNCC	2 cut(s)	24, 172
NmuCI	GTSAC	2 cut(s)	551, 569
OliI	CACNNNNGTG	1 cut(s)	236
PagI	TCATGA	1 cut(s)	333
PceI	AGGCCT	1 cut(s)	123
PciSI	GCTCTTC	1 cut(s)	506
PfeI	GAWTC	1 cut(s)	563
PleI	GAGTC	2 cut(s)	491, 594
PpsI	GAGTC	2 cut(s)	491, 594
Psp124BI	GAGCTC	1 cut(s)	597
PspN4I	GGNNCC	2 cut(s)	24, 172
PsuI	RGATCY	1 cut(s)	580
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
RseI	CAYNNNNRTG	2 cut(s)	236, 335
SacI	GAGCTC	1 cut(s)	597
SapI	GCTCTTC	1 cut(s)	506
Sau3AI	GATC	3 cut(s)	147, 385, 580
SchI	GAGTC	2 cut(s)	491, 594
SduI	GDGCHC	3 cut(s)	11, 545, 597
SetI	ASST	7 cut(s)	43, 250, 426, 474, 487, 536, 597
SmiMI	CAYNNNNRTG	2 cut(s)	236, 335
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	3 cut(s)	91, 137, 391
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	2 cut(s)	342, 516
SspMI	CTAG	2 cut(s)	213, 584
SstI	GAGCTC	1 cut(s)	597
StuI	AGGCCT	1 cut(s)	123
StyI	CCWWGG	2 cut(s)	124, 537
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	426
TasI	AATT	3 cut(s)	91, 137, 391
TatI	WGTACW	1 cut(s)	404
TfiI	GAWTC	1 cut(s)	563
TseFI	GTSAC	2 cut(s)	551, 569
Tsp45I	GTSAC	2 cut(s)	551, 569
TspDTI	ATGAA	1 cut(s)	372
XbaI	TCTAGA	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	2 cut(s)	122, 334
XspI	CTAG	2 cut(s)	213, 584
ZraI	GACGTC	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.