Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002270.1

Orthogroup ID

OG0005797

Physical Location & Seq

Genomic Coordinates Forward (+)

168417 .. 169903

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002270.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgggaaacgaaagaggaggcggatcgtcttctagttcttcaaggaaagggaagaagagtaattcggacaagccgaagcaaccgcagagagggcttggagttgctcaattagagaagatcagattacatggccaaatgggattcatcaatccttaccctactaataatttcatcaataacgtggaggataacagagtgcaagcagcagcttattcatcgtctttcgcttcttcgcagtcctcttcatctccctcagtctcttatggcttccaccctaacatcatgatggggctcggtgaatatgatcaaagagcaagcatcatatatggtgatccttcccaactaaacagtacaacaccaagatgggaacccagcaatgccatgttagagccgacccaacagtttgtgcaaccaggcatcactactagacacctcctaaatccacctgcagaagtactagaggagtttcatcacaagaagagcaaaaaacatagaagtaattcaatgggctcaagcagtcagaattctgaatcaagtgactctcaagaagtagatttggaactcagactctcactttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.07

Weight (kDa)

8.86

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840
fragaria_vesca	FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660
malus_domestica	MD02G1057600.v1.1 MD15G1192000.v1.1
prunus_persica	Prupe.7G225200_v2.0.a1
pyrus_communis	pycom02g04670 pycom15g17180
rosa_chinensis	RchiOBHm_Chr2g0091291
rosa_laevigata	RLG00000016209
rosa_multiflora	Rmu_sc0002270.1_g000044
rosa_roxburghii	Rroxscaffold_2G00150250
rosa_rugosa	Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100
rosa_samantha	Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800
rosa_wichuraiana	Rw2G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	454
Acc36I	ACCTGC	1 cut(s)	454
AciI	CCGC	2 cut(s)	21, 83
AclWI	GGATC	2 cut(s)	31, 326
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	523
AfaI	GTAC	2 cut(s)	352, 456
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	42, 504
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	2 cut(s)	31, 326
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	203, 206
ApoI	RAATTY	1 cut(s)	523
Asp700I	GAANNNNTTC	1 cut(s)	499
AsuHPI	GGTGA	2 cut(s)	308, 341
BalI	TGGCCA	1 cut(s)	132
BanII	GRGCYC	2 cut(s)	294, 512
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	215, 218
BccI	CCATC	2 cut(s)	280, 357
BciT130I	CCWGG	1 cut(s)	414
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	3 cut(s)	33, 426, 458
BfmI	CTRYAG	1 cut(s)	447
BfuAI	ACCTGC	1 cut(s)	454
BisI	GCNGC	2 cut(s)	204, 207
BlsI	GCNGC	2 cut(s)	205, 208
BmcAI	AGTACT	1 cut(s)	456
Bme1390I	CCNGG	1 cut(s)	414
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	2 cut(s)	327, 426
BpiI	GAAGAC	1 cut(s)	21
BpuEI	CTTGAG	2 cut(s)	496, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	267, 577
BseRI	GAGGAG	2 cut(s)	30, 476
BseXI	GCAGC	2 cut(s)	215, 218
BseYI	CCCAGC	1 cut(s)	371
BshFI	GGCC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	294, 512
Bsp143I	GATC	4 cut(s)	23, 117, 304, 331
BspACI	CCGC	2 cut(s)	21, 83
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	266, 576
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	369
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	2 cut(s)	31, 326
BspQI	GCTCTTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	382
BssMI	GATC	4 cut(s)	23, 117, 304, 331
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	350, 402
Bst6I	CTCTTC	3 cut(s)	50, 247, 473
BstC8I	GCNNGC	2 cut(s)	201, 316
BstDEI	CTNAG	2 cut(s)	253, 563
BstKTI	GATC	4 cut(s)	26, 120, 307, 334
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	4 cut(s)	23, 117, 304, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	215, 218
BstV2I	GAAGAC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	2 cut(s)	201, 316
CciI	TCATGA	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	351, 455
CviAII	CATG	3 cut(s)	128, 283, 382
CviJI	RGCY	8 cut(s)	73, 94, 132, 209, 267, 292, 391, 510
CviKI_1	RGCY	8 cut(s)	73, 94, 132, 209, 267, 292, 391, 510
CviQI	GTAC	2 cut(s)	351, 455
DdeI	CTNAG	2 cut(s)	253, 563
DpnI	GATC	4 cut(s)	25, 119, 306, 333
DpnII	GATC	4 cut(s)	23, 117, 304, 331
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	3 cut(s)	50, 247, 473
EarI	CTCTTC	3 cut(s)	50, 247, 473
EciI	GGCGGA	1 cut(s)	36
Eco24I	GRGCYC	2 cut(s)	294, 512
EcoRI	GAATTC	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	412
EcoT38I	GRGCYC	2 cut(s)	294, 512
FaeI	CATG	3 cut(s)	131, 286, 385
FaiI	YATR	9 cut(s)	129, 264, 284, 303, 323, 325, 327, 383, 492
FatI	CATG	3 cut(s)	127, 282, 381
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	204, 207
FriOI	GRGCYC	2 cut(s)	294, 512
Fsp4HI	GCNGC	2 cut(s)	204, 207
FspBI	CTAG	3 cut(s)	33, 426, 458
GluI	GCNGC	2 cut(s)	204, 207
GsaI	CCCAGC	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	132
Hin1II	CATG	3 cut(s)	131, 286, 385
HinfI	GANTC	4 cut(s)	141, 530, 539, 567
HphI	GGTGA	2 cut(s)	308, 341
Hpy188I	TCNGA	5 cut(s)	67, 122, 522, 529, 566
Hpy188III	TCNNGA	2 cut(s)	283, 545
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	2 cut(s)	350, 402
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	3 cut(s)	199, 409, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	2 cut(s)	253, 563
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	3 cut(s)	131, 286, 385
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	23, 117, 304, 331
LguI	GCTCTTC	1 cut(s)	473
LpnPI	CCDG	4 cut(s)	385, 399, 426, 459
Lsp1109I	GCAGC	2 cut(s)	215, 218
LweI	GCATC	2 cut(s)	327, 426
MaeI	CTAG	3 cut(s)	33, 426, 458
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	4 cut(s)	25, 119, 306, 333
MboI	GATC	4 cut(s)	23, 117, 304, 331
MboII	GAAGA	8 cut(s)	21, 30, 64, 67, 127, 222, 234, 490
MhlI	GDGCHC	2 cut(s)	294, 512
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	5 cut(s)	61, 107, 166, 499, 523
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	533, 561
MnlI	CCTC	8 cut(s)	8, 11, 83, 178, 250, 262, 443, 454
Mox20I	TGGCCA	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	499
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	577
MslI	CAYNNNNRTG	2 cut(s)	284, 361
Msp20I	TGGCCA	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	91
NdeII	GATC	4 cut(s)	23, 117, 304, 331
NlaIII	CATG	3 cut(s)	131, 286, 385
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	1 cut(s)	536
PagI	TCATGA	1 cut(s)	282
PaqCI	CACCTGC	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	473
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	499
PfeI	GAWTC	2 cut(s)	141, 530
PkrI	GCNGC	2 cut(s)	205, 208
PleI	GAGTC	2 cut(s)	533, 561
PpsI	GAGTC	2 cut(s)	533, 561
Psp6I	CCWGG	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	451
RsaI	GTAC	2 cut(s)	352, 456
RsaNI	GTAC	2 cut(s)	351, 455
RseI	CAYNNNNRTG	2 cut(s)	284, 361
SapI	GCTCTTC	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	577
SatI	GCNGC	2 cut(s)	204, 207
Sau3AI	GATC	4 cut(s)	23, 117, 304, 331
ScaI	AGTACT	1 cut(s)	456
SchI	GAGTC	2 cut(s)	533, 561
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	2 cut(s)	294, 512
SetI	ASST	4 cut(s)	183, 211, 435, 448
SfaNI	GCATC	2 cut(s)	327, 426
SfcI	CTRYAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	2 cut(s)	284, 361
SmlI	CTYRAG	2 cut(s)	511, 543
SmoI	CTYRAG	2 cut(s)	511, 543
Sse9I	AATT	5 cut(s)	61, 107, 166, 499, 523
SsiI	CCGC	2 cut(s)	21, 83
SspMI	CTAG	3 cut(s)	33, 426, 458
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	2 cut(s)	350, 402
TaiI	ACGT	1 cut(s)	183
TasI	AATT	5 cut(s)	61, 107, 166, 499, 523
TatI	WGTACW	2 cut(s)	350, 454
TfiI	GAWTC	2 cut(s)	141, 530
Tru1I	TTAA	1 cut(s)	577
Tru9I	TTAA	1 cut(s)	577
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	2 cut(s)	203, 206
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	5 cut(s)	133, 160, 204, 234, 458
XapI	RAATTY	1 cut(s)	523
XmnI	GAANNNNTTC	1 cut(s)	499
XspI	CTAG	3 cut(s)	33, 426, 458
ZrmI	AGTACT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.