Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005797

Physical Location & Seq

Genomic Coordinates Forward (+)

4557865 .. 4559994

Gene Structure 2130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG060300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGGAGCAGTTATTTTGGGGAGCCAAACATGGGAAACGAAAGAGGAGGCGGATCGTCTTCTAGTTCTTCAAGGAAAGGGAAGAAGAGTAATTCGGACAAGCCGAAGCAACCGCAGAGAGGGCTTGGAGTTGCTCAATTAGAGAAGATCAGATTACATGGCCAAATGGGATTCATCAATCCTTACCCTACTAATAATTTCATCAATAACCAGCAGGTGGAGGATAACAGAGTGCAAGCAGCAGCTTATTCATCGTCTTTCGCTTCTTCGCAGTCCTCTTCATCTCCCTCAGTCTCTTATGGCTTCCACCCTAACATCATGATGGGGCTCGGTGAATATGATCAAAGAGCAAGCATCATCTATGGTGATCCTTCCCAACTAAACAGTACAACACCAAGGTTTGTATTTTTACTCGTATATATCTCCCATGCTTCACTCAATCTAGGAGGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.3

Weight (kDa)

9.47

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0005797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840
fragaria_vesca	FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660
malus_domestica	MD02G1057600.v1.1 MD15G1192000.v1.1
prunus_persica	Prupe.7G225200_v2.0.a1
pyrus_communis	pycom02g04670 pycom15g17180
rosa_chinensis	RchiOBHm_Chr2g0091291
rosa_laevigata	RLG00000016209
rosa_multiflora	Rmu_sc0002270.1_g000044
rosa_roxburghii	Rroxscaffold_2G00150250
rosa_rugosa	Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100
rosa_samantha	Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800
rosa_wichuraiana	Rw2G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	205
Acc36I	ACCTGC	1 cut(s)	205
AccB7I	CCANNNNNTGG	1 cut(s)	217
AciI	CCGC	2 cut(s)	51, 113
AclWI	GGATC	2 cut(s)	61, 362
AcoI	YGGCCR	1 cut(s)	160
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	3 cut(s)	32, 119, 217
AgsI	TTSAA	1 cut(s)	72
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	61, 362
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	239, 242
AsuHPI	GGTGA	2 cut(s)	344, 377
BalI	TGGCCA	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	251, 254
BccI	CCATC	1 cut(s)	316
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	298
BfaI	CTAG	2 cut(s)	63, 443
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	2 cut(s)	240, 243
BlsI	GCNGC	2 cut(s)	241, 244
BmiI	GGNNCC	1 cut(s)	24
BmsI	GCATC	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 119, 217
BseDI	CCNNGG	1 cut(s)	395
BseLI	CCNNNNNNNGG	3 cut(s)	32, 119, 217
BseMII	CTCAG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	251, 254
BshFI	GGCC	1 cut(s)	162
BslI	CCNNNNNNNGG	3 cut(s)	32, 119, 217
BsmAI	GTCTC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	4 cut(s)	53, 147, 340, 367
BspACI	CCGC	2 cut(s)	51, 113
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	302
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	2 cut(s)	61, 362
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	4 cut(s)	53, 147, 340, 367
BssT1I	CCWWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	386
Bst6I	CTCTTC	2 cut(s)	80, 283
BstC8I	GCNNGC	2 cut(s)	237, 352
BstDEI	CTNAG	1 cut(s)	289
BstKTI	GATC	4 cut(s)	56, 150, 343, 370
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	4 cut(s)	53, 147, 340, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	251, 254
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	237, 352
CciI	TCATGA	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	4 cut(s)	31, 158, 319, 428
CviJI	RGCY	7 cut(s)	25, 103, 124, 162, 245, 303, 328
CviKI_1	RGCY	7 cut(s)	25, 103, 124, 162, 245, 303, 328
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	1 cut(s)	289
DpnI	GATC	4 cut(s)	55, 149, 342, 369
DpnII	GATC	4 cut(s)	53, 147, 340, 367
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	80, 283
EarI	CTCTTC	2 cut(s)	80, 283
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	4 cut(s)	34, 161, 322, 431
FaiI	YATR	9 cut(s)	32, 159, 300, 320, 339, 363, 418, 420, 429
FatI	CATG	4 cut(s)	30, 157, 318, 427
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	240, 243
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	2 cut(s)	240, 243
FspBI	CTAG	2 cut(s)	63, 443
GluI	GCNGC	2 cut(s)	240, 243
HaeIII	GGCC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	34, 161, 322, 431
HinfI	GANTC	1 cut(s)	171
HphI	GGTGA	2 cut(s)	344, 377
Hpy188I	TCNGA	2 cut(s)	97, 152
Hpy188III	TCNNGA	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	381
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	289
Hsp92II	CATG	4 cut(s)	34, 161, 322, 431
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	53, 147, 340, 367
LmnI	GCTCC	2 cut(s)	6, 22
LpnPI	CCDG	2 cut(s)	200, 224
Lsp1109I	GCAGC	2 cut(s)	251, 254
LweI	GCATC	1 cut(s)	363
MaeI	CTAG	2 cut(s)	63, 443
MalI	GATC	4 cut(s)	55, 149, 342, 369
MboI	GATC	4 cut(s)	53, 147, 340, 367
MboII	GAAGA	7 cut(s)	51, 60, 94, 97, 157, 258, 270
MhlI	GDGCHC	1 cut(s)	330
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	3 cut(s)	91, 137, 196
MluNI	TGGCCA	1 cut(s)	162
MnlI	CCTC	7 cut(s)	38, 41, 113, 214, 286, 298, 440
Mox20I	TGGCCA	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	4 cut(s)	53, 147, 340, 367
NlaIII	CATG	4 cut(s)	34, 161, 322, 431
NlaIV	GGNNCC	1 cut(s)	24
PagI	TCATGA	1 cut(s)	318
PaqCI	CACCTGC	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	171
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	241, 244
PspN4I	GGNNCC	1 cut(s)	24
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	1 cut(s)	320
SatI	GCNGC	2 cut(s)	240, 243
Sau3AI	GATC	4 cut(s)	53, 147, 340, 367
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	4 cut(s)	219, 247, 401, 451
SfaNI	GCATC	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	3 cut(s)	91, 137, 196
SsiI	CCGC	2 cut(s)	51, 113
SspMI	CTAG	2 cut(s)	63, 443
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	386
TasI	AATT	3 cut(s)	91, 137, 196
TatI	WGTACW	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	171
TseI	GCWGC	2 cut(s)	239, 242
TspDTI	ATGAA	4 cut(s)	163, 190, 240, 270
Van91I	CCANNNNNTGG	1 cut(s)	217
XspI	CTAG	2 cut(s)	63, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.