Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005797

Physical Location & Seq

Genomic Coordinates Forward (+)

4485878 .. 4491896

Gene Structure 6019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG060800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGGGAGCAGTTATTTTGGGGAGCCAAACATGGGAAACGAAAGAGGAGGCGGATCGTCTTCTAGTTCTTCAAGGAAAGGGAAGAAGAGTAATTCGGACAAGCCGAAGCAACCGCAGAGAGGGCTTGGAGTTGCTCAATTAGAGAAGATCAGATTACATGGCCAAATGGGATTCATCAATCCTTACCCTACTAATAATTTCATCAATAACCAGGTGGAGGATAACAGAGTGCAAGCAGCAGCTTATTCATCGTCTTTCGCTTCTTCGCAGTCCTCTTCATCTCCCTCAGTCTCTTATGGCTTCCACCCTAACATCATGATGGGGCTCGGTGAATATGATCAAAGAGCAAGCATCATATATGGTGATCCTTCCCAACTAAACAGTACAACACCAAGATGGGAACCCAGCAATGCCATGTTAGAGCCGACCCAACAGTTTGTGCAACCAGGCATCACTACTAGACACCTCCTAAATCCACCTGCAGAAGTACTAGAGAGAGATGGGGAGGAAAAGCAGGTTGCAAAAGAGCTAAGAGCTCATAAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

19.93

Weight (kDa)

8.86

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840
fragaria_vesca	FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660
malus_domestica	MD02G1057600.v1.1 MD15G1192000.v1.1
prunus_persica	Prupe.7G225200_v2.0.a1
pyrus_communis	pycom02g04670 pycom15g17180
rosa_chinensis	RchiOBHm_Chr2g0091291
rosa_laevigata	RLG00000016209
rosa_multiflora	Rmu_sc0002270.1_g000044
rosa_roxburghii	Rroxscaffold_2G00150250
rosa_rugosa	Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100
rosa_samantha	Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800
rosa_wichuraiana	Rw2G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	487
Acc36I	ACCTGC	2 cut(s)	487, 505
AciI	CCGC	2 cut(s)	51, 113
AclWI	GGATC	2 cut(s)	61, 359
AcoI	YGGCCR	1 cut(s)	160
AfaI	GTAC	2 cut(s)	385, 489
AfiI	CCNNNNNNNGG	3 cut(s)	32, 119, 217
AgsI	TTSAA	1 cut(s)	72
AjnI	CCWGG	2 cut(s)	210, 445
AluBI	AGCT	3 cut(s)	242, 529, 536
AluI	AGCT	3 cut(s)	242, 529, 536
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	2 cut(s)	61, 359
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	236, 239
AsuHPI	GGTGA	2 cut(s)	341, 374
BalI	TGGCCA	1 cut(s)	162
BanII	GRGCYC	2 cut(s)	327, 538
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	2 cut(s)	248, 251
BccI	CCATC	3 cut(s)	313, 390, 494
BciT130I	CCWGG	2 cut(s)	212, 447
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	3 cut(s)	63, 459, 491
BfmI	CTRYAG	1 cut(s)	480
BfuAI	ACCTGC	2 cut(s)	487, 505
BisI	GCNGC	2 cut(s)	237, 240
BlsI	GCNGC	2 cut(s)	238, 241
BmcAI	AGTACT	1 cut(s)	489
Bme1390I	CCNGG	2 cut(s)	212, 447
BmiI	GGNNCC	2 cut(s)	24, 402
BmrFI	CCNGG	2 cut(s)	212, 447
BmsI	GCATC	2 cut(s)	360, 459
BpiI	GAAGAC	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 119, 217
Bse3DI	GCAATG	1 cut(s)	415
BseBI	CCWGG	2 cut(s)	212, 447
BseLI	CCNNNNNNNGG	3 cut(s)	32, 119, 217
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	248, 251
BseYI	CCCAGC	1 cut(s)	404
BshFI	GGCC	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	538
BslI	CCNNNNNNNGG	3 cut(s)	32, 119, 217
BsmAI	GTCTC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	2 cut(s)	327, 538
Bsp143I	GATC	4 cut(s)	53, 147, 337, 364
BspACI	CCGC	2 cut(s)	51, 113
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	299
BspHI	TCATGA	1 cut(s)	315
BspLI	GGNNCC	2 cut(s)	24, 402
BspMAI	CTGCAG	1 cut(s)	484
BspMI	ACCTGC	2 cut(s)	487, 505
BspPI	GGATC	2 cut(s)	61, 359
BsrDI	GCAATG	1 cut(s)	415
BssMI	GATC	4 cut(s)	53, 147, 337, 364
Bst2UI	CCWGG	2 cut(s)	212, 447
Bst4CI	ACNGT	2 cut(s)	383, 435
Bst6I	CTCTTC	2 cut(s)	80, 280
BstC8I	GCNNGC	2 cut(s)	234, 349
BstDEI	CTNAG	2 cut(s)	286, 530
BstKTI	GATC	4 cut(s)	56, 150, 340, 367
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	4 cut(s)	53, 147, 337, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	2 cut(s)	212, 447
BstSCI	CCNGG	2 cut(s)	210, 445
BstSFI	CTRYAG	1 cut(s)	480
BstV1I	GCAGC	2 cut(s)	248, 251
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	162
BveI	ACCTGC	2 cut(s)	487, 505
Cac8I	GCNNGC	2 cut(s)	234, 349
CciI	TCATGA	1 cut(s)	315
CsiI	ACCWGGT	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	384, 488
CviAII	CATG	4 cut(s)	31, 158, 316, 415
CviQI	GTAC	2 cut(s)	384, 488
DdeI	CTNAG	2 cut(s)	286, 530
DpnI	GATC	4 cut(s)	55, 149, 339, 366
DpnII	GATC	4 cut(s)	53, 147, 337, 364
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	80, 280
EarI	CTCTTC	2 cut(s)	80, 280
EciI	GGCGGA	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	536
Eco24I	GRGCYC	2 cut(s)	327, 538
Eco53kI	GAGCTC	1 cut(s)	536
EcoICRI	GAGCTC	1 cut(s)	536
EcoRII	CCWGG	2 cut(s)	210, 445
EcoT38I	GRGCYC	2 cut(s)	327, 538
FaeI	CATG	4 cut(s)	34, 161, 319, 418
FatI	CATG	4 cut(s)	30, 157, 315, 414
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	237, 240
FriOI	GRGCYC	2 cut(s)	327, 538
Fsp4HI	GCNGC	2 cut(s)	237, 240
FspBI	CTAG	3 cut(s)	63, 459, 491
GluI	GCNGC	2 cut(s)	237, 240
GsaI	CCCAGC	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	34, 161, 319, 418
HinfI	GANTC	1 cut(s)	171
HphI	GGTGA	2 cut(s)	341, 374
Hpy188I	TCNGA	2 cut(s)	97, 152
Hpy188III	TCNNGA	1 cut(s)	316
HpyAV	CCTTC	1 cut(s)	378
HpyCH4III	ACNGT	2 cut(s)	383, 435
HpyCH4V	TGCA	4 cut(s)	232, 442, 482, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	286, 530
Hsp92II	CATG	4 cut(s)	34, 161, 319, 418
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	4 cut(s)	53, 147, 337, 364
LmnI	GCTCC	2 cut(s)	6, 22
LpnPI	CCDG	7 cut(s)	197, 224, 418, 432, 459, 492, 500
Lsp1109I	GCAGC	2 cut(s)	248, 251
LweI	GCATC	2 cut(s)	360, 459
MabI	ACCWGGT	1 cut(s)	210
MaeI	CTAG	3 cut(s)	63, 459, 491
MalI	GATC	4 cut(s)	55, 149, 339, 366
MboI	GATC	4 cut(s)	53, 147, 337, 364
MboII	GAAGA	7 cut(s)	51, 60, 94, 97, 157, 255, 267
MhlI	GDGCHC	2 cut(s)	327, 538
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	3 cut(s)	91, 137, 196
MluNI	TGGCCA	1 cut(s)	162
MnlI	CCTC	8 cut(s)	38, 41, 113, 211, 283, 295, 476, 499
Mox20I	TGGCCA	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	162
MslI	CAYNNNNRTG	2 cut(s)	317, 394
Msp20I	TGGCCA	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	212, 447
MvaI	CCWGG	2 cut(s)	212, 447
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	4 cut(s)	53, 147, 337, 364
NlaIII	CATG	4 cut(s)	34, 161, 319, 418
NlaIV	GGNNCC	2 cut(s)	24, 402
PagI	TCATGA	1 cut(s)	315
PaqCI	CACCTGC	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	238, 241
Psp124BI	GAGCTC	1 cut(s)	538
Psp6I	CCWGG	2 cut(s)	210, 445
PspFI	CCCAGC	1 cut(s)	404
PspGI	CCWGG	2 cut(s)	210, 445
PspN4I	GGNNCC	2 cut(s)	24, 402
PstI	CTGCAG	1 cut(s)	484
RsaI	GTAC	2 cut(s)	385, 489
RsaNI	GTAC	2 cut(s)	384, 488
RseI	CAYNNNNRTG	2 cut(s)	317, 394
SacI	GAGCTC	1 cut(s)	538
SatI	GCNGC	2 cut(s)	237, 240
Sau3AI	GATC	4 cut(s)	53, 147, 337, 364
ScaI	AGTACT	1 cut(s)	489
ScrFI	CCNGG	2 cut(s)	212, 447
SduI	GDGCHC	2 cut(s)	327, 538
SetI	ASST	7 cut(s)	216, 244, 468, 481, 519, 531, 538
SexAI	ACCWGGT	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	360, 459
SfcI	CTRYAG	1 cut(s)	480
SmiMI	CAYNNNNRTG	2 cut(s)	317, 394
Sse9I	AATT	3 cut(s)	91, 137, 196
SsiI	CCGC	2 cut(s)	51, 113
SspMI	CTAG	3 cut(s)	63, 459, 491
SstI	GAGCTC	1 cut(s)	538
StyD4I	CCNGG	2 cut(s)	210, 445
TaaI	ACNGT	2 cut(s)	383, 435
TasI	AATT	3 cut(s)	91, 137, 196
TatI	WGTACW	2 cut(s)	383, 487
TfiI	GAWTC	1 cut(s)	171
TseI	GCWGC	2 cut(s)	236, 239
TspDTI	ATGAA	4 cut(s)	163, 190, 237, 267
XspI	CTAG	3 cut(s)	63, 459, 491
ZrmI	AGTACT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.