Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005797

Physical Location & Seq

Genomic Coordinates Forward (+)

15135067 .. 15137210

Gene Structure 2144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1192000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGGGAGCAGTTATTTTGGGGAGCCAAACATGGGAGGAGGAGGTGGTGGTGGTTCTTCTTCTTCTTCAAGGAAGGGAAAGAAAAGCAATTCAGACAAGCCAAAGCAACCCCAGAGAGGCCTTGGAGTGGCTCAATTGGAGAAGATCAGATTACATGGTCAAATGGGTAGCACTTATCACCCTTCCCTCCACTCTCCATACTCCACTAGTTTCAGCAACGAGGAGACAAGAGCGCAAACAGCTTATTCGTCCATACCATCATCATCTTTATCTTCTTCACCATCCTCCACTTCTTCACTCTCTTATGGCTTCCATGGCTTCCACCCCAACATCATGATGGGCGGTCTTGGTGAATATGAAAGAGCAAACATGACATATGGTGGTGAACATAATTCCCAACTTAGTACAACAGCCAGATGGGACGTCCCCGGTAATGCCATTTTAGACACCCAACATTTTGTGCAATCCAGCATGACCAGACACCTTCTAAATCCACCTCCAGTAGAGGACTCTCATCACAGGACGAGCAAAAAACATAGAAGTAGCTCCATGGGCTCAAGCAGTCACAACTCTGAATCAAGTGACACCCAAGATCTAGATTTGGAGCTCAGACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

22.05

Weight (kDa)

8.07

Isoelectric Point (pI)

59.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840
fragaria_vesca	FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660
malus_domestica	MD02G1057600.v1.1 MD15G1192000.v1.1
prunus_persica	Prupe.7G225200_v2.0.a1
pyrus_communis	pycom02g04670 pycom15g17180
rosa_chinensis	RchiOBHm_Chr2g0091291
rosa_laevigata	RLG00000016209
rosa_multiflora	Rmu_sc0002270.1_g000044
rosa_roxburghii	Rroxscaffold_2G00150250
rosa_rugosa	Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100
rosa_samantha	Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800
rosa_wichuraiana	Rw2G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	426
AciI	CCGC	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	3 cut(s)	32, 116, 127
AgsI	TTSAA	1 cut(s)	69
AhlI	ACTAGT	1 cut(s)	206
AluBI	AGCT	3 cut(s)	242, 546, 607
AluI	AGCT	3 cut(s)	242, 546, 607
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	615
AoxI	GGCC	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	235
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	4 cut(s)	170, 270, 362, 395
BanII	GRGCYC	2 cut(s)	557, 609
Bbv12I	GWGCWC	1 cut(s)	609
BccI	CCATC	4 cut(s)	265, 289, 331, 411
BcnI	CCSGG	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	218
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	2 cut(s)	207, 596
BglII	AGATCT	1 cut(s)	592
Bme1390I	CCNGG	1 cut(s)	429
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	429
BpmI	CTGGAG	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	541
BpuMI	CCSGG	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	423
BsaJI	CCNNGG	4 cut(s)	121, 313, 427, 549
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 116, 127
Bse1I	ACTGG	1 cut(s)	500
BseDI	CCNNGG	4 cut(s)	121, 313, 427, 549
BseGI	GGATG	1 cut(s)	281
BseLI	CCNNNNNNNGG	3 cut(s)	32, 116, 127
BseNI	ACTGG	1 cut(s)	500
BseRI	GAGGAG	3 cut(s)	51, 54, 236
BshFI	GGCC	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	609
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	2 cut(s)	410, 434
BslI	CCNNNNNNNGG	3 cut(s)	32, 116, 127
BsmAI	GTCTC	1 cut(s)	218
BsmFI	GGGAC	2 cut(s)	410, 434
BsnI	GGCC	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	557, 609
Bsp143I	GATC	2 cut(s)	144, 592
Bsp19I	CCATGG	2 cut(s)	313, 549
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	500
BssECI	CCNNGG	4 cut(s)	121, 313, 427, 549
BssMI	GATC	2 cut(s)	144, 592
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	3 cut(s)	121, 313, 549
BstACI	GRCGYC	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	401, 608
BstDSI	CCRYGG	2 cut(s)	313, 549
BstF5I	GGATG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	2 cut(s)	147, 595
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	2 cut(s)	144, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 315, 552
BstSCI	CCNGG	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BsuRI	GGCC	1 cut(s)	120
BtgI	CCRYGG	2 cut(s)	313, 549
BtsCI	GGATG	1 cut(s)	281
CaiI	CAGNNNCTG	1 cut(s)	615
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	7 cut(s)	31, 155, 314, 334, 370, 472, 550
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	2 cut(s)	401, 608
DpnI	GATC	2 cut(s)	146, 594
DpnII	GATC	2 cut(s)	144, 592
Ecl136II	GAGCTC	1 cut(s)	607
Eco130I	CCWWGG	3 cut(s)	121, 313, 549
Eco147I	AGGCCT	1 cut(s)	120
Eco24I	GRGCYC	2 cut(s)	557, 609
Eco53kI	GAGCTC	1 cut(s)	607
EcoICRI	GAGCTC	1 cut(s)	607
EcoT14I	CCWWGG	3 cut(s)	121, 313, 549
EcoT38I	GRGCYC	2 cut(s)	557, 609
ErhI	CCWWGG	3 cut(s)	121, 313, 549
FaeI	CATG	7 cut(s)	34, 158, 317, 337, 373, 475, 553
FaqI	GGGAC	2 cut(s)	410, 434
FatI	CATG	7 cut(s)	30, 154, 313, 333, 369, 471, 549
FauNDI	CATATG	1 cut(s)	376
FokI	GGATG	1 cut(s)	268
FriOI	GRGCYC	2 cut(s)	557, 609
FspBI	CTAG	2 cut(s)	207, 596
GlaI	GCGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	1 cut(s)	429
HhaI	GCGC	1 cut(s)	235
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	7 cut(s)	34, 158, 317, 337, 373, 475, 553
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HinfI	GANTC	3 cut(s)	509, 575, 612
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	4 cut(s)	170, 270, 362, 395
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	5 cut(s)	94, 149, 574, 611, 617
Hpy188III	TCNNGA	2 cut(s)	334, 596
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	3 cut(s)	67, 192, 494
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	1 cut(s)	463
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 315, 552
HpyF3I	CTNAG	2 cut(s)	401, 608
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	7 cut(s)	34, 158, 317, 337, 373, 475, 553
HspAI	GCGC	1 cut(s)	233
Kzo9I	GATC	2 cut(s)	144, 592
LmnI	GCTCC	4 cut(s)	6, 22, 551, 604
LpnPI	CCDG	7 cut(s)	125, 427, 442, 481, 490, 505, 513
MaeI	CTAG	2 cut(s)	207, 596
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	2 cut(s)	563, 581
MalI	GATC	2 cut(s)	146, 594
MboI	GATC	2 cut(s)	144, 592
MboII	GAAGA	8 cut(s)	48, 51, 54, 57, 154, 264, 267, 285
MfeI	CAATTG	1 cut(s)	134
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	2 cut(s)	557, 609
MluCI	AATT	3 cut(s)	88, 134, 391
MlyI	GAGTC	2 cut(s)	503, 606
MnlI	CCTC	9 cut(s)	29, 32, 35, 110, 197, 214, 295, 499, 507
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	429
MunI	CAATTG	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	239, 315, 552
NciI	CCSGG	1 cut(s)	429
NcoI	CCATGG	2 cut(s)	313, 549
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	2 cut(s)	144, 592
NlaIII	CATG	7 cut(s)	34, 158, 317, 337, 373, 475, 553
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	2 cut(s)	563, 581
PagI	TCATGA	1 cut(s)	333
PceI	AGGCCT	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	575
PleI	GAGTC	2 cut(s)	503, 606
PpsI	GAGTC	2 cut(s)	503, 606
Psp124BI	GAGCTC	1 cut(s)	609
PspN4I	GGNNCC	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	615
PsuI	RGATCY	1 cut(s)	592
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	609
Sau3AI	GATC	2 cut(s)	144, 592
SchI	GAGTC	2 cut(s)	503, 606
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	2 cut(s)	557, 609
SetI	ASST	7 cut(s)	46, 244, 426, 486, 499, 548, 609
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	3 cut(s)	88, 134, 391
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	2 cut(s)	207, 596
SstI	GAGCTC	1 cut(s)	609
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	3 cut(s)	121, 313, 549
TaiI	ACGT	1 cut(s)	426
TasI	AATT	3 cut(s)	88, 134, 391
TatI	WGTACW	1 cut(s)	404
TfiI	GAWTC	1 cut(s)	575
TseFI	GTSAC	2 cut(s)	563, 581
Tsp45I	GTSAC	2 cut(s)	563, 581
TspDTI	ATGAA	1 cut(s)	372
XbaI	TCTAGA	1 cut(s)	595
XcmI	CCANNNNNNNNNTGG	2 cut(s)	119, 334
XspI	CTAG	2 cut(s)	207, 596
ZraI	GACGTC	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.