Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005797

Physical Location & Seq

Genomic Coordinates Forward (+)

5003531 .. 5005724

Gene Structure 2194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG061200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGGAGCAGTTATTTTGGGGAGCCAAACATGGGAAACGAAACAGGAGGCGGATCGTCTTCTAGTTCTTCAAGGAAAGGGAAGAAGAGTAATTCGGACAAGCCGAAGCAACCGCAGAGAGGGCTTGGAGTTGCTCAATTAGAGAAGATCAGATTACATGGTCAAATGGGATTCATCAATCCTTACCCTACTAATAATTTCATCAATAACCAGCAGGTGGAGGATAACAGAGTGCAAGCAGCAGCTTATTCATCGTCTTTCGCTTCTTCGCAGTCCTCTTCATCTCCCTCAGTCTCTTATGGCTTCCACCCTAACATCATGATGGGGCTCGGTGAATATGATCAAAGAGCAAGCATCATATATGGTGATCCTTCCCAACTAAACAGTACAACACCAAGATGGGAACCCAGCAATGCCATGTTAGAGCCGACCCAACAGTTTGTGCAACCAGGCATCACTACTAGACACCTCCTAAATCCACCTGCAGAAGTACTAGAGGAGTTTCATCACAAGACGAGCAAAAAACATAGAAGTAATTCAATGGGCTCAAGCAGTCAGAATTCTGAATCAAGTGACTCTCAAGAAGTAGATTTGGAACTCAGACTCTCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.32

Weight (kDa)

6.59

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840
fragaria_vesca	FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660
malus_domestica	MD02G1057600.v1.1 MD15G1192000.v1.1
prunus_persica	Prupe.7G225200_v2.0.a1
pyrus_communis	pycom02g04670 pycom15g17180
rosa_chinensis	RchiOBHm_Chr2g0091291
rosa_laevigata	RLG00000016209
rosa_multiflora	Rmu_sc0002270.1_g000044
rosa_roxburghii	Rroxscaffold_2G00150250
rosa_rugosa	Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100
rosa_samantha	Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800
rosa_wichuraiana	Rw2G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	205, 490
Acc36I	ACCTGC	2 cut(s)	205, 490
AccB7I	CCANNNNNTGG	1 cut(s)	217
AciI	CCGC	2 cut(s)	51, 113
AclWI	GGATC	2 cut(s)	61, 362
AcsI	RAATTY	1 cut(s)	559
AfaI	GTAC	2 cut(s)	388, 492
AfiI	CCNNNNNNNGG	3 cut(s)	32, 119, 217
AgsI	TTSAA	2 cut(s)	72, 540
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	61, 362
ApeKI	GCWGC	2 cut(s)	239, 242
ApoI	RAATTY	1 cut(s)	559
Asp700I	GAANNNNTTC	1 cut(s)	535
AsuHPI	GGTGA	2 cut(s)	344, 377
BanII	GRGCYC	2 cut(s)	330, 548
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	251, 254
BccI	CCATC	2 cut(s)	316, 393
BciT130I	CCWGG	1 cut(s)	450
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	298
BfaI	CTAG	3 cut(s)	63, 462, 494
BfmI	CTRYAG	1 cut(s)	483
BfuAI	ACCTGC	2 cut(s)	205, 490
BisI	GCNGC	2 cut(s)	240, 243
BlsI	GCNGC	2 cut(s)	241, 244
BmcAI	AGTACT	1 cut(s)	492
Bme1390I	CCNGG	1 cut(s)	450
BmiI	GGNNCC	2 cut(s)	24, 405
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	2 cut(s)	363, 462
BpiI	GAAGAC	1 cut(s)	51
BpuEI	CTTGAG	2 cut(s)	532, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 119, 217
Bse3DI	GCAATG	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	450
BseLI	CCNNNNNNNGG	3 cut(s)	32, 119, 217
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	2 cut(s)	303, 613
BseRI	GAGGAG	1 cut(s)	512
BseXI	GCAGC	2 cut(s)	251, 254
BseYI	CCCAGC	1 cut(s)	407
BslI	CCNNNNNNNGG	3 cut(s)	32, 119, 217
BsmAI	GTCTC	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	330, 548
Bsp143I	GATC	4 cut(s)	53, 147, 340, 367
BspACI	CCGC	2 cut(s)	51, 113
BspCNI	CTCAG	2 cut(s)	302, 612
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	2 cut(s)	24, 405
BspMAI	CTGCAG	1 cut(s)	487
BspMI	ACCTGC	2 cut(s)	205, 490
BspPI	GGATC	2 cut(s)	61, 362
BsrDI	GCAATG	1 cut(s)	418
BssMI	GATC	4 cut(s)	53, 147, 340, 367
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	386, 438
Bst6I	CTCTTC	2 cut(s)	80, 283
BstC8I	GCNNGC	2 cut(s)	237, 352
BstDEI	CTNAG	2 cut(s)	289, 599
BstKTI	GATC	4 cut(s)	56, 150, 343, 370
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	4 cut(s)	53, 147, 340, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	448
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	2 cut(s)	251, 254
BstV2I	GAAGAC	1 cut(s)	51
BveI	ACCTGC	2 cut(s)	205, 490
Cac8I	GCNNGC	2 cut(s)	237, 352
CciI	TCATGA	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	387, 491
CviAII	CATG	4 cut(s)	31, 158, 319, 418
CviJI	RGCY	8 cut(s)	25, 103, 124, 245, 303, 328, 427, 546
CviKI_1	RGCY	8 cut(s)	25, 103, 124, 245, 303, 328, 427, 546
CviQI	GTAC	2 cut(s)	387, 491
DdeI	CTNAG	2 cut(s)	289, 599
DpnI	GATC	4 cut(s)	55, 149, 342, 369
DpnII	GATC	4 cut(s)	53, 147, 340, 367
Eam1104I	CTCTTC	2 cut(s)	80, 283
EarI	CTCTTC	2 cut(s)	80, 283
EciI	GGCGGA	1 cut(s)	66
Eco24I	GRGCYC	2 cut(s)	330, 548
EcoRI	GAATTC	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	448
EcoT38I	GRGCYC	2 cut(s)	330, 548
FaeI	CATG	4 cut(s)	34, 161, 322, 421
FatI	CATG	4 cut(s)	30, 157, 318, 417
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	240, 243
FriOI	GRGCYC	2 cut(s)	330, 548
Fsp4HI	GCNGC	2 cut(s)	240, 243
FspBI	CTAG	3 cut(s)	63, 462, 494
GluI	GCNGC	2 cut(s)	240, 243
GsaI	CCCAGC	1 cut(s)	411
Hin1II	CATG	4 cut(s)	34, 161, 322, 421
HinfI	GANTC	4 cut(s)	171, 566, 575, 603
HphI	GGTGA	2 cut(s)	344, 377
Hpy188I	TCNGA	5 cut(s)	97, 152, 558, 565, 602
Hpy188III	TCNNGA	2 cut(s)	319, 581
HpyAV	CCTTC	1 cut(s)	381
HpyCH4III	ACNGT	2 cut(s)	386, 438
HpyCH4V	TGCA	3 cut(s)	235, 445, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	289, 599
Hsp92II	CATG	4 cut(s)	34, 161, 322, 421
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	53, 147, 340, 367
LmnI	GCTCC	2 cut(s)	6, 22
LpnPI	CCDG	7 cut(s)	30, 200, 224, 421, 435, 462, 495
Lsp1109I	GCAGC	2 cut(s)	251, 254
LweI	GCATC	2 cut(s)	363, 462
MaeI	CTAG	3 cut(s)	63, 462, 494
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	4 cut(s)	55, 149, 342, 369
MboI	GATC	4 cut(s)	53, 147, 340, 367
MboII	GAAGA	7 cut(s)	51, 60, 94, 97, 157, 258, 270
MhlI	GDGCHC	2 cut(s)	330, 548
MluCI	AATT	5 cut(s)	91, 137, 196, 535, 559
MlyI	GAGTC	2 cut(s)	569, 597
MnlI	CCTC	7 cut(s)	41, 113, 214, 286, 298, 479, 490
MroXI	GAANNNNTTC	1 cut(s)	535
MseI	TTAA	1 cut(s)	613
MslI	CAYNNNNRTG	2 cut(s)	320, 397
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	4 cut(s)	53, 147, 340, 367
NlaIII	CATG	4 cut(s)	34, 161, 322, 421
NlaIV	GGNNCC	2 cut(s)	24, 405
NmuCI	GTSAC	1 cut(s)	572
PagI	TCATGA	1 cut(s)	318
PaqCI	CACCTGC	2 cut(s)	205, 490
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	171, 566
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	241, 244
PleI	GAGTC	2 cut(s)	569, 597
PpsI	GAGTC	2 cut(s)	569, 597
Psp6I	CCWGG	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	24, 405
PstI	CTGCAG	1 cut(s)	487
RsaI	GTAC	2 cut(s)	388, 492
RsaNI	GTAC	2 cut(s)	387, 491
RseI	CAYNNNNRTG	2 cut(s)	320, 397
SaqAI	TTAA	1 cut(s)	613
SatI	GCNGC	2 cut(s)	240, 243
Sau3AI	GATC	4 cut(s)	53, 147, 340, 367
ScaI	AGTACT	1 cut(s)	492
SchI	GAGTC	2 cut(s)	569, 597
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	2 cut(s)	330, 548
SetI	ASST	4 cut(s)	219, 247, 471, 484
SfaNI	GCATC	2 cut(s)	363, 462
SfcI	CTRYAG	1 cut(s)	483
SmiMI	CAYNNNNRTG	2 cut(s)	320, 397
SmlI	CTYRAG	2 cut(s)	547, 579
SmoI	CTYRAG	2 cut(s)	547, 579
Sse9I	AATT	5 cut(s)	91, 137, 196, 535, 559
SsiI	CCGC	2 cut(s)	51, 113
SspMI	CTAG	3 cut(s)	63, 462, 494
StyD4I	CCNGG	1 cut(s)	448
TaaI	ACNGT	2 cut(s)	386, 438
TasI	AATT	5 cut(s)	91, 137, 196, 535, 559
TatI	WGTACW	2 cut(s)	386, 490
TfiI	GAWTC	2 cut(s)	171, 566
Tru1I	TTAA	1 cut(s)	613
Tru9I	TTAA	1 cut(s)	613
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	2 cut(s)	239, 242
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	5 cut(s)	163, 190, 240, 270, 494
Van91I	CCANNNNNTGG	1 cut(s)	217
XapI	RAATTY	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	535
XspI	CTAG	3 cut(s)	63, 462, 494
ZrmI	AGTACT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.