Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005797

Physical Location & Seq

Genomic Coordinates Forward (+)

2996915 .. 2998985

Gene Structure 2071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g05660.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGGAGCAGTTATTTCGGGGAGCCAAACATGGGAGGAGGAGGAGGAGGATCGTCTTCTAGTTCTTCAAGGAAAGGGAAGAAGAGTAATTCCGACAAGCCGAAGCAACCGCAGAGAGGGCTTGGAGTTGCTCAGTTAGAGAAGATCAGATTACATGGTCAAATGGGATTCATCAATCCTTACCCTACTAACAATTTCATCACTAACCAGGTGGAGGATACAAGAATGCAAGCAGCAGCTTATTCATCGTCTTTCGCTTCGTCACAGTCCTCTTCATCTCCCTCAGTCTCTTATGGCTTCCACCCTAACATGATGATGGGGCTTGGTGAATTTGATCAAAGAGCAAGCATGATATACGGTGATCCTTCCCAATTACACAGTACAACACCAAGATGGGAACCCAGCAATGCTATGTTAGAGCCAACCCAACAGTTTGTGCAACCAAGCATCACTACTAGACATCTCCTAAATCCACCAGCAGTAGTACTAGAGGAGTTTCATCAGAATAATAGCAAAAAACATAGAAGTAATTCGATGGGCTCAAGCAGTCAGAACTCTGAATCCAGTGACTCTCAAGAAGTAGATTTGGAACTCAGACTCTCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

22.0

Weight (kDa)

7.03

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840
fragaria_vesca	FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660
malus_domestica	MD02G1057600.v1.1 MD15G1192000.v1.1
prunus_persica	Prupe.7G225200_v2.0.a1
pyrus_communis	pycom02g04670 pycom15g17180
rosa_chinensis	RchiOBHm_Chr2g0091291
rosa_laevigata	RLG00000016209
rosa_multiflora	Rmu_sc0002270.1_g000044
rosa_roxburghii	Rroxscaffold_2G00150250
rosa_rugosa	Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100
rosa_samantha	Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800
rosa_wichuraiana	Rw2G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	2 cut(s)	58, 356
AcsI	RAATTY	1 cut(s)	329
AfaI	GTAC	2 cut(s)	382, 486
AfiI	CCNNNNNNNGG	3 cut(s)	32, 116, 214
AgsI	TTSAA	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	207
AloI	GAACNNNNNNTCC	2 cut(s)	545, 577
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	58, 356
ApeKI	GCWGC	2 cut(s)	233, 236
ApoI	RAATTY	1 cut(s)	329
Asp700I	GAANNNNTTC	1 cut(s)	529
AsuHPI	GGTGA	2 cut(s)	338, 371
BanII	GRGCYC	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	245, 248
BccI	CCATC	3 cut(s)	310, 387, 529
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	209
BciVI	GTATCC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	3 cut(s)	60, 456, 488
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	234, 237
BlsI	GCNGC	2 cut(s)	235, 238
BmcAI	AGTACT	1 cut(s)	486
Bme1390I	CCNGG	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	24, 399
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	48
BpuEI	CTTGAG	2 cut(s)	526, 558
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 116, 214
Bse1I	ACTGG	1 cut(s)	564
Bse3DI	GCAATG	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	209
BseLI	CCNNNNNNNGG	3 cut(s)	32, 116, 214
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	3 cut(s)	146, 297, 607
BseNI	ACTGG	1 cut(s)	564
BseRI	GAGGAG	5 cut(s)	51, 54, 57, 60, 506
BseXI	GCAGC	2 cut(s)	245, 248
BseYI	CCCAGC	1 cut(s)	401
BslI	CCNNNNNNNGG	3 cut(s)	32, 116, 214
BsmAI	GTCTC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp143I	GATC	4 cut(s)	50, 144, 334, 361
BspACI	CCGC	1 cut(s)	110
BspCNI	CTCAG	3 cut(s)	145, 296, 606
BspLI	GGNNCC	2 cut(s)	24, 399
BspPI	GGATC	2 cut(s)	58, 356
BsrDI	GCAATG	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	564
BssMI	GATC	4 cut(s)	50, 144, 334, 361
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	4 cut(s)	267, 359, 380, 432
Bst6I	CTCTTC	2 cut(s)	77, 277
BstC8I	GCNNGC	2 cut(s)	231, 346
BstDEI	CTNAG	3 cut(s)	132, 283, 593
BstKTI	GATC	4 cut(s)	53, 147, 337, 364
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	4 cut(s)	50, 144, 334, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	245, 248
BstV2I	GAAGAC	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	571
Cac8I	GCNNGC	2 cut(s)	231, 346
CsiI	ACCWGGT	1 cut(s)	207
Csp6I	GTAC	2 cut(s)	381, 485
CviAII	CATG	4 cut(s)	31, 155, 310, 349
CviJI	RGCY	8 cut(s)	25, 100, 121, 239, 297, 322, 421, 540
CviKI_1	RGCY	8 cut(s)	25, 100, 121, 239, 297, 322, 421, 540
CviQI	GTAC	2 cut(s)	381, 485
DdeI	CTNAG	3 cut(s)	132, 283, 593
DpnI	GATC	4 cut(s)	52, 146, 336, 363
DpnII	GATC	4 cut(s)	50, 144, 334, 361
Eam1104I	CTCTTC	2 cut(s)	77, 277
EarI	CTCTTC	2 cut(s)	77, 277
Eco24I	GRGCYC	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	542
FaeI	CATG	4 cut(s)	34, 158, 313, 352
FaiI	YATR	8 cut(s)	32, 156, 294, 311, 350, 355, 413, 522
FatI	CATG	4 cut(s)	30, 154, 309, 348
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	234, 237
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	2 cut(s)	234, 237
FspBI	CTAG	3 cut(s)	60, 456, 488
GluI	GCNGC	2 cut(s)	234, 237
GsaI	CCCAGC	1 cut(s)	405
Hin1II	CATG	4 cut(s)	34, 158, 313, 352
HinfI	GANTC	4 cut(s)	168, 560, 569, 597
HphI	GGTGA	2 cut(s)	338, 371
Hpy188I	TCNGA	6 cut(s)	94, 149, 504, 552, 559, 596
Hpy188III	TCNNGA	1 cut(s)	575
HpyAV	CCTTC	1 cut(s)	375
HpyCH4III	ACNGT	4 cut(s)	267, 359, 380, 432
HpyCH4V	TGCA	2 cut(s)	229, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	3 cut(s)	132, 283, 593
Hsp92II	CATG	4 cut(s)	34, 158, 313, 352
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	50, 144, 334, 361
LmnI	GCTCC	2 cut(s)	6, 22
LpnPI	CCDG	5 cut(s)	194, 221, 415, 489, 577
Lsp1109I	GCAGC	2 cut(s)	245, 248
LweI	GCATC	1 cut(s)	456
MabI	ACCWGGT	1 cut(s)	207
MaeI	CTAG	3 cut(s)	60, 456, 488
MaeIII	GTNAC	2 cut(s)	261, 566
MalI	GATC	4 cut(s)	52, 146, 336, 363
MboI	GATC	4 cut(s)	50, 144, 334, 361
MboII	GAAGA	6 cut(s)	48, 57, 91, 94, 154, 264
MhlI	GDGCHC	1 cut(s)	542
MluCI	AATT	5 cut(s)	88, 193, 329, 371, 529
MlyI	GAGTC	2 cut(s)	563, 591
MmeI	TCCRAC	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	529
MseI	TTAA	1 cut(s)	607
MslI	CAYNNNNRTG	2 cut(s)	314, 391
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	118
NdeII	GATC	4 cut(s)	50, 144, 334, 361
NlaIII	CATG	4 cut(s)	34, 158, 313, 352
NlaIV	GGNNCC	2 cut(s)	24, 399
NmuCI	GTSAC	2 cut(s)	261, 566
PctI	GAATGC	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	168, 560
PkrI	GCNGC	2 cut(s)	235, 238
PleI	GAGTC	2 cut(s)	563, 591
PpsI	GAGTC	2 cut(s)	563, 591
Psp6I	CCWGG	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	24, 399
RsaI	GTAC	2 cut(s)	382, 486
RsaNI	GTAC	2 cut(s)	381, 485
RseI	CAYNNNNRTG	2 cut(s)	314, 391
SaqAI	TTAA	1 cut(s)	607
SatI	GCNGC	2 cut(s)	234, 237
Sau3AI	GATC	4 cut(s)	50, 144, 334, 361
ScaI	AGTACT	1 cut(s)	486
SchI	GAGTC	2 cut(s)	563, 591
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	542
SetI	ASST	2 cut(s)	213, 241
SexAI	ACCWGGT	1 cut(s)	207
SfaNI	GCATC	1 cut(s)	456
SmiMI	CAYNNNNRTG	2 cut(s)	314, 391
SmlI	CTYRAG	2 cut(s)	541, 573
SmoI	CTYRAG	2 cut(s)	541, 573
Sse9I	AATT	5 cut(s)	88, 193, 329, 371, 529
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	3 cut(s)	60, 456, 488
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	4 cut(s)	267, 359, 380, 432
TaqI	TCGA	1 cut(s)	533
TasI	AATT	5 cut(s)	88, 193, 329, 371, 529
TatI	WGTACW	2 cut(s)	380, 484
TfiI	GAWTC	2 cut(s)	168, 560
Tru1I	TTAA	1 cut(s)	607
Tru9I	TTAA	1 cut(s)	607
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	2 cut(s)	261, 566
TseI	GCWGC	2 cut(s)	233, 236
Tsp45I	GTSAC	2 cut(s)	261, 566
TspDTI	ATGAA	5 cut(s)	160, 187, 234, 264, 488
TspRI	CASTG	1 cut(s)	571
XapI	RAATTY	1 cut(s)	329
XmnI	GAANNNNTTC	1 cut(s)	529
XspI	CTAG	3 cut(s)	60, 456, 488
ZrmI	AGTACT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.