Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005797

Physical Location & Seq

Genomic Coordinates Forward (+)

1362016 .. 1363449

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0015900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGTTACTCTGTAATCACACCACCACCCACTCCTCCACCTCTTCTCCACCCGAACCCGAATCCGAATCCGAAGCCCAAACCCAATGCCCTCTCCCTGACCCGACGCTCCCTCCTCCTCTCCTCCACCTCCCTCTCCCTCACCACCCTCCCCTCCTCCGCCGCCGCCTCCCCTCCGCCGCCCGACACCACCATCACCGACCGCGTCTTCATGGACTTCAGCCTCTGCCCCACCTACTTCCGCTGGTCCTCCGAGCAACCCGTCCTCTGCCCCGACCCGGTCCCTCTGGGCCGGGTCGTCCTGGGCCTCTACGGCCACCACGTCCCCATCACCGTCGCGAACTTCAAGGCCATGGTCACCTCCGCCGCCTACAAGGGCACAACCGTCCATAAACTCTTCCCGGGTCAATTCTTCCTCGCGGGTCACCAGGGCGATAAACCCGGCGACGTCCGGCGGCCCATTGGCCTCGTCGCCCCGAACACCGAGACCGTCGATTCCAGGGCGTTTGAGTTGACTCACTCCCGGCCAGGGCTTCTCTCCCTTAGTCTATCGGAGAACGACGACGACGACGAGATCAAGCTCGACCCGGATTACCGAAACGTTGAGTTCTCCATCACTACTGGACCCGGCCCATGTCCTCAGCTCGATTACAAGAACATTGTCTTCGGCTCAGTACTCGAAGGTTTGGATGTTGTGACAGCTATAGCAGCTATACCGACGTACAGGCCATCGGAGAGAATACAGCAGTTCAACGATTTTGCAACGTTTATCGGAGATGATAGAGCAATGCAGGCTCGGGCGCTGTGGAATAAACCTCTCAAAACTGTGTATATCAGTGACTGTGGTGAGCTCAAAGTTGCAAAGCCTTCCCTTTCTCCTCCTAGTCTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

32.25

Weight (kDa)

6.3

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	96 - 244	4.2e-20	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840
fragaria_vesca	FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660
malus_domestica	MD02G1057600.v1.1 MD15G1192000.v1.1
prunus_persica	Prupe.7G225200_v2.0.a1
pyrus_communis	pycom02g04670 pycom15g17180
rosa_chinensis	RchiOBHm_Chr2g0091291
rosa_laevigata	RLG00000016209
rosa_multiflora	Rmu_sc0002270.1_g000044
rosa_roxburghii	Rroxscaffold_2G00150250
rosa_rugosa	Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100
rosa_samantha	Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800
rosa_wichuraiana	Rw2G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	450
AccII	CGCG	3 cut(s)	204, 338, 419
AclI	AACGTT	2 cut(s)	600, 764
AcoI	YGGCCR	2 cut(s)	313, 524
AcuI	CTGAAG	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	2 cut(s)	675, 722
AfiI	CCNNNNNNNGG	2 cut(s)	277, 528
AgsI	TTSAA	2 cut(s)	346, 751
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	4 cut(s)	300, 426, 497, 526
AluBI	AGCT	5 cut(s)	580, 643, 701, 710, 850
AluI	AGCT	5 cut(s)	580, 643, 701, 710, 850
Alw21I	GWGCWC	1 cut(s)	852
Alw26I	GTCTC	1 cut(s)	479
AlwNI	CAGNNNCTG	2 cut(s)	225, 840
Ama87I	CYCGRG	2 cut(s)	400, 795
AoxI	GGCC	9 cut(s)	289, 304, 313, 348, 455, 463, 524, 628, 725
ApeKI	GCWGC	1 cut(s)	707
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	7 cut(s)	246, 280, 289, 304, 456, 623, 629
AsuC2I	CCSGG	8 cut(s)	278, 293, 401, 402, 441, 523, 587, 627
AsuHPI	GGTGA	6 cut(s)	133, 187, 322, 349, 416, 857
AvaI	CYCGRG	2 cut(s)	400, 795
AvaII	GGWCC	3 cut(s)	246, 280, 623
BaeGI	GKGCMC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	852
BbsI	GAAGAC	3 cut(s)	199, 655, 878
Bbv12I	GWGCWC	1 cut(s)	852
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	1 cut(s)	719
BccI	CCATC	4 cut(s)	200, 335, 620, 736
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	4 cut(s)	302, 428, 499, 528
BcnI	CCSGG	8 cut(s)	278, 293, 401, 402, 441, 523, 587, 627
BcoDI	GTCTC	1 cut(s)	479
BfaI	CTAG	1 cut(s)	882
BfmI	CTRYAG	1 cut(s)	702
BfoI	RGCGCY	1 cut(s)	803
BglI	GCCNNNNNGGC	1 cut(s)	312
BisI	GCNGC	6 cut(s)	162, 165, 179, 366, 455, 708
BlsI	GCNGC	6 cut(s)	163, 166, 180, 367, 456, 709
BmcAI	AGTACT	1 cut(s)	675
Bme18I	GGWCC	3 cut(s)	246, 280, 623
BmeT110I	CYCGRG	2 cut(s)	400, 795
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	7 cut(s)	246, 280, 289, 304, 456, 623, 629
BmiI	GGNNCC	2 cut(s)	282, 625
BpiI	GAAGAC	3 cut(s)	199, 655, 878
Bpu10I	CCTNAGC	1 cut(s)	639
BpuMI	CCSGG	8 cut(s)	278, 293, 401, 402, 441, 523, 587, 627
BsaHI	GRCGYC	1 cut(s)	447
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	6 cut(s)	301, 351, 400, 427, 498, 527
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 96, 126
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 528
Bse1I	ACTGG	1 cut(s)	625
Bse3DI	GCAATG	1 cut(s)	792
BseBI	CCWGG	4 cut(s)	302, 428, 499, 528
BseDI	CCNNGG	6 cut(s)	301, 351, 400, 427, 498, 527
BseGI	GGATG	1 cut(s)	694
BseLI	CCNNNNNNNGG	2 cut(s)	277, 528
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	2 cut(s)	653, 684
BseNI	ACTGG	1 cut(s)	625
BseRI	GAGGAG	6 cut(s)	24, 104, 107, 112, 145, 867
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	719
Bsh1236I	CGCG	3 cut(s)	204, 338, 419
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	9 cut(s)	291, 306, 315, 350, 457, 465, 526, 630, 727
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	852
BsiHKCI	CYCGRG	2 cut(s)	400, 795
BsiSI	CCGG	8 cut(s)	278, 292, 401, 441, 451, 523, 587, 627
BslFI	GGGAC	2 cut(s)	266, 308
BslI	CCNNNNNNNGG	2 cut(s)	277, 528
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	2 cut(s)	266, 308
BsnI	GGCC	9 cut(s)	291, 306, 315, 350, 457, 465, 526, 630, 727
Bso31I	GGTCTC	1 cut(s)	479
BsoBI	CYCGRG	2 cut(s)	400, 795
Bsp1286I	GDGCHC	2 cut(s)	380, 852
Bsp143I	GATC	1 cut(s)	573
Bsp19I	CCATGG	1 cut(s)	351
Bsp68I	TCGCGA	1 cut(s)	338
BspANI	GGCC	9 cut(s)	291, 306, 315, 350, 457, 465, 526, 630, 727
BspCNI	CTCAG	2 cut(s)	652, 683
BspFNI	CGCG	3 cut(s)	204, 338, 419
BspLI	GGNNCC	2 cut(s)	282, 625
BspTNI	GGTCTC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	792
BsrI	ACTGG	1 cut(s)	625
BssECI	CCNNGG	6 cut(s)	301, 351, 400, 427, 498, 527
BssMI	GATC	1 cut(s)	573
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	4 cut(s)	302, 428, 499, 528
Bst4CI	ACNGT	5 cut(s)	334, 385, 490, 826, 842
Bst6I	CTCTTC	2 cut(s)	48, 401
BstACI	GRCGYC	1 cut(s)	447
BstC8I	GCNNGC	1 cut(s)	792
BstDEI	CTNAG	3 cut(s)	542, 639, 670
BstDSI	CCRYGG	1 cut(s)	351
BstEII	GGTNACC	2 cut(s)	355, 422
BstF5I	GGATG	1 cut(s)	694
BstFNI	CGCG	3 cut(s)	204, 338, 419
BstH2I	RGCGCY	1 cut(s)	803
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	1 cut(s)	576
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	1 cut(s)	573
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	3 cut(s)	312, 707, 791
BstNI	CCWGG	4 cut(s)	302, 428, 499, 528
BstPI	GGTNACC	2 cut(s)	355, 422
BstSFI	CTRYAG	1 cut(s)	702
BstSLI	GKGCMC	1 cut(s)	380
BstUI	CGCG	3 cut(s)	204, 338, 419
BstV1I	GCAGC	1 cut(s)	719
BstV2I	GAAGAC	3 cut(s)	199, 655, 878
BsuRI	GGCC	9 cut(s)	291, 306, 315, 350, 457, 465, 526, 630, 727
BtgI	CCRYGG	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	694
BtsIMutI	CAGTG	1 cut(s)	841
BtuMI	TCGCGA	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	792
CaiI	CAGNNNCTG	2 cut(s)	225, 840
CfoI	GCGC	1 cut(s)	802
Cfr13I	GGNCC	7 cut(s)	246, 280, 289, 304, 456, 623, 629
Cfr9I	CCCGGG	1 cut(s)	400
CseI	GACGC	2 cut(s)	114, 193
Csp6I	GTAC	2 cut(s)	674, 721
CviAII	CATG	3 cut(s)	211, 352, 633
CviQI	GTAC	2 cut(s)	674, 721
DdeI	CTNAG	3 cut(s)	542, 639, 670
DpnI	GATC	1 cut(s)	575
DpnII	GATC	1 cut(s)	573
EaeI	YGGCCR	2 cut(s)	313, 524
Eam1104I	CTCTTC	2 cut(s)	48, 401
EarI	CTCTTC	2 cut(s)	48, 401
EciI	GGCGGA	3 cut(s)	148, 165, 352
Ecl136II	GAGCTC	1 cut(s)	850
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	852
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	3 cut(s)	246, 280, 623
Eco53kI	GAGCTC	1 cut(s)	850
Eco57I	CTGAAG	1 cut(s)	202
Eco88I	CYCGRG	2 cut(s)	400, 795
Eco91I	GGTNACC	2 cut(s)	355, 422
EcoICRI	GAGCTC	1 cut(s)	850
EcoO65I	GGTNACC	2 cut(s)	355, 422
EcoRII	CCWGG	4 cut(s)	300, 426, 497, 526
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	852
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	3 cut(s)	214, 355, 636
FaiI	YATR	7 cut(s)	212, 353, 390, 634, 704, 713, 831
FaqI	GGGAC	2 cut(s)	266, 308
FatI	CATG	3 cut(s)	210, 351, 632
FauI	CCCGC	1 cut(s)	412
Fnu4HI	GCNGC	6 cut(s)	162, 165, 179, 366, 455, 708
FokI	GGATG	1 cut(s)	701
FriOI	GRGCYC	1 cut(s)	852
Fsp4HI	GCNGC	6 cut(s)	162, 165, 179, 366, 455, 708
FspBI	CTAG	1 cut(s)	882
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	6 cut(s)	162, 165, 179, 366, 455, 708
HaeII	RGCGCY	1 cut(s)	803
HaeIII	GGCC	9 cut(s)	291, 306, 315, 350, 457, 465, 526, 630, 727
HapII	CCGG	8 cut(s)	278, 292, 401, 441, 451, 523, 587, 627
HgaI	GACGC	2 cut(s)	114, 193
HhaI	GCGC	1 cut(s)	802
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	3 cut(s)	214, 355, 636
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	4 cut(s)	61, 67, 494, 514
HpaII	CCGG	8 cut(s)	278, 292, 401, 441, 451, 523, 587, 627
HphI	GGTGA	6 cut(s)	133, 187, 322, 349, 416, 857
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	6 cut(s)	66, 72, 253, 553, 733, 773
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	1 cut(s)	513
HpyAV	CCTTC	2 cut(s)	674, 876
HpyCH4III	ACNGT	5 cut(s)	334, 385, 490, 826, 842
HpyCH4IV	ACGT	5 cut(s)	321, 447, 600, 719, 764
HpyCH4V	TGCA	3 cut(s)	761, 790, 860
HpyF10VI	GCNNNNNNNGC	3 cut(s)	312, 707, 791
HpyF3I	CTNAG	3 cut(s)	542, 639, 670
HpySE526I	ACGT	5 cut(s)	321, 447, 600, 719, 764
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	3 cut(s)	214, 355, 636
HspAI	GCGC	1 cut(s)	800
Kzo9I	GATC	1 cut(s)	573
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	1 cut(s)	719
MaeI	CTAG	1 cut(s)	882
MaeII	ACGT	5 cut(s)	321, 447, 600, 719, 764
MaeIII	GTNAC	5 cut(s)	5, 355, 422, 694, 836
MalI	GATC	1 cut(s)	575
MboI	GATC	1 cut(s)	573
MboII	GAAGA	6 cut(s)	35, 199, 388, 403, 655, 878
MhlI	GDGCHC	2 cut(s)	380, 852
MluCI	AATT	1 cut(s)	407
MlyI	GAGTC	1 cut(s)	508
MseI	TTAA	1 cut(s)	892
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	8 cut(s)	278, 292, 401, 441, 451, 523, 587, 627
MvaI	CCWGG	4 cut(s)	302, 428, 499, 528
MvnI	CGCG	3 cut(s)	204, 338, 419
MwoI	GCNNNNNNNGC	3 cut(s)	312, 707, 791
NciI	CCSGG	8 cut(s)	278, 293, 401, 402, 441, 523, 587, 627
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	1 cut(s)	573
NlaIII	CATG	3 cut(s)	214, 355, 636
NlaIV	GGNNCC	2 cut(s)	282, 625
NmuCI	GTSAC	4 cut(s)	355, 422, 694, 836
NruI	TCGCGA	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	3 cut(s)	318, 564, 567
PfeI	GAWTC	3 cut(s)	61, 67, 494
PflFI	GACNNNGTC	2 cut(s)	203, 278
PkrI	GCNGC	6 cut(s)	163, 166, 180, 367, 456, 709
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
Psp124BI	GAGCTC	1 cut(s)	852
Psp1406I	AACGTT	2 cut(s)	600, 764
Psp6I	CCWGG	4 cut(s)	300, 426, 497, 526
PspEI	GGTNACC	2 cut(s)	355, 422
PspGI	CCWGG	4 cut(s)	300, 426, 497, 526
PspN4I	GGNNCC	2 cut(s)	282, 625
PspPI	GGNCC	7 cut(s)	246, 280, 289, 304, 456, 623, 629
PstNI	CAGNNNCTG	2 cut(s)	225, 840
PsyI	GACNNNGTC	2 cut(s)	203, 278
RruI	TCGCGA	1 cut(s)	338
RsaI	GTAC	2 cut(s)	675, 722
RsaNI	GTAC	2 cut(s)	674, 721
SacI	GAGCTC	1 cut(s)	852
SaqAI	TTAA	1 cut(s)	892
SatI	GCNGC	6 cut(s)	162, 165, 179, 366, 455, 708
Sau3AI	GATC	1 cut(s)	573
Sau96I	GGNCC	7 cut(s)	246, 280, 289, 304, 456, 623, 629
ScaI	AGTACT	1 cut(s)	675
SchI	GAGTC	1 cut(s)	508
SduI	GDGCHC	2 cut(s)	380, 852
SfcI	CTRYAG	1 cut(s)	702
SfiI	GGCCNNNNNGGCC	1 cut(s)	312
SinI	GGWCC	3 cut(s)	246, 280, 623
SmaI	CCCGGG	1 cut(s)	402
Sse9I	AATT	1 cut(s)	407
SspMI	CTAG	1 cut(s)	882
SstI	GAGCTC	1 cut(s)	852
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	5 cut(s)	334, 385, 490, 826, 842
TaiI	ACGT	5 cut(s)	324, 450, 603, 722, 767
TaqI	TCGA	4 cut(s)	492, 582, 645, 678
TasI	AATT	1 cut(s)	407
TatI	WGTACW	1 cut(s)	673
TauI	GCSGC	5 cut(s)	164, 167, 181, 368, 457
TfiI	GAWTC	3 cut(s)	61, 67, 494
Tru1I	TTAA	1 cut(s)	892
Tru9I	TTAA	1 cut(s)	892
TscAI	CASTG	1 cut(s)	841
TseFI	GTSAC	4 cut(s)	355, 422, 694, 836
TseI	GCWGC	1 cut(s)	707
Tsp45I	GTSAC	4 cut(s)	355, 422, 694, 836
TspDTI	ATGAA	1 cut(s)	199
TspMI	CCCGGG	1 cut(s)	400
TspRI	CASTG	1 cut(s)	841
Tth111I	GACNNNGTC	2 cut(s)	203, 278
VpaK11BI	GGWCC	3 cut(s)	246, 280, 623
XmaI	CCCGGG	1 cut(s)	400
XspI	CTAG	1 cut(s)	882
ZraI	GACGTC	1 cut(s)	448
ZrmI	AGTACT	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.