Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005797

Physical Location & Seq

Genomic Coordinates Forward (+)

12099510 .. 12101282

Gene Structure 1773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17180.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGGAGCAGTTATTTTGGGGAGCCAAACATGGGAGGAGGAGGAGGTGGTGGTGGTTCTTCTTCTTCTTCAAGGAAGGGAAAGAAGAGCAATTCAGACAAGCCAAAGCAACCCCAGAGAGGCCTTGGAGTGGCTCAATTGGAGAAGATCAGATTACATGGTCAAATGGGTAGCACTTATCACCCTTCCCTCCACTCTCCATACTCCACTAGTTTCAGCAACGAGGAGACAAGAGCGCAAACAGCTTATTCATCCATACCATCATCATCTTTCTCTTCTTCACCATCCTCCACTTCCTCACTCTCTTATGGCTTCCATGGCTTCCACCCCAACATCATGACGGGCGGTCTTGGTGAATATGAAAGAGCAAACATGACATATGGTGGTGAACATAATTCCCAACTTAGTACAACAGCCAGATGGGACGTCCCCGGTAATGCCATTTTAGACACCCAACATTTTGTGCAATCCAGCATGACCAGACACCTTCTAAATCCACCTCCAGTAGAGGACTCTCATCACAGGACGAGCAAAAAACACAGAAGTAGCTCCATGGGCTCAAGCAGTCACAACTCTGAATCAAGTGACACCCAAGATCTAGATTTGGAGCTCAGACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.11

Weight (kDa)

8.07

Isoelectric Point (pI)

59.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840
fragaria_vesca	FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660
malus_domestica	MD02G1057600.v1.1 MD15G1192000.v1.1
prunus_persica	Prupe.7G225200_v2.0.a1
pyrus_communis	pycom02g04670 pycom15g17180
rosa_chinensis	RchiOBHm_Chr2g0091291
rosa_laevigata	RLG00000016209
rosa_multiflora	Rmu_sc0002270.1_g000044
rosa_roxburghii	Rroxscaffold_2G00150250
rosa_rugosa	Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100
rosa_samantha	Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800
rosa_wichuraiana	Rw2G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	429
AciI	CCGC	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	426
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	3 cut(s)	32, 119, 130
AgsI	TTSAA	1 cut(s)	72
AhdI	GACNNNNNGTC	1 cut(s)	345
AhlI	ACTAGT	1 cut(s)	209
AluBI	AGCT	3 cut(s)	245, 549, 610
AluI	AGCT	3 cut(s)	245, 549, 610
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	1 cut(s)	221
AlwNI	CAGNNNCTG	1 cut(s)	618
AoxI	GGCC	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	432
AsuHPI	GGTGA	4 cut(s)	173, 273, 365, 398
BanII	GRGCYC	2 cut(s)	560, 612
Bbv12I	GWGCWC	1 cut(s)	612
BccI	CCATC	3 cut(s)	268, 292, 414
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	2 cut(s)	210, 599
BglII	AGATCT	1 cut(s)	595
Bme1390I	CCNGG	1 cut(s)	432
BmeRI	GACNNNNNGTC	1 cut(s)	345
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	544
BpuMI	CCSGG	1 cut(s)	432
BsaHI	GRCGYC	1 cut(s)	426
BsaJI	CCNNGG	4 cut(s)	124, 316, 430, 552
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 119, 130
Bse1I	ACTGG	1 cut(s)	503
BseDI	CCNNGG	4 cut(s)	124, 316, 430, 552
BseGI	GGATG	2 cut(s)	251, 284
BseLI	CCNNNNNNNGG	3 cut(s)	32, 119, 130
BseNI	ACTGG	1 cut(s)	503
BseRI	GAGGAG	4 cut(s)	51, 54, 57, 239
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	612
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	2 cut(s)	413, 437
BslI	CCNNNNNNNGG	3 cut(s)	32, 119, 130
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	2 cut(s)	413, 437
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	2 cut(s)	560, 612
Bsp143I	GATC	2 cut(s)	147, 595
Bsp19I	CCATGG	2 cut(s)	316, 552
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	24
BspQI	GCTCTTC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	503
BssECI	CCNNGG	4 cut(s)	124, 316, 430, 552
BssMI	GATC	2 cut(s)	147, 595
BssNI	GRCGYC	1 cut(s)	426
BssT1I	CCWWGG	3 cut(s)	124, 316, 552
Bst6I	CTCTTC	2 cut(s)	80, 280
BstACI	GRCGYC	1 cut(s)	426
BstDEI	CTNAG	2 cut(s)	404, 611
BstDSI	CCRYGG	2 cut(s)	316, 552
BstF5I	GGATG	2 cut(s)	251, 284
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	2 cut(s)	150, 598
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	2 cut(s)	147, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 318, 555
BstSCI	CCNGG	1 cut(s)	430
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	2 cut(s)	316, 552
BtsCI	GGATG	2 cut(s)	251, 284
CaiI	CAGNNNCTG	1 cut(s)	618
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	7 cut(s)	31, 158, 317, 337, 373, 475, 553
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	2 cut(s)	404, 611
DpnI	GATC	2 cut(s)	149, 597
DpnII	GATC	2 cut(s)	147, 595
DriI	GACNNNNNGTC	1 cut(s)	345
Eam1104I	CTCTTC	2 cut(s)	80, 280
Eam1105I	GACNNNNNGTC	1 cut(s)	345
EarI	CTCTTC	2 cut(s)	80, 280
Ecl136II	GAGCTC	1 cut(s)	610
Eco130I	CCWWGG	3 cut(s)	124, 316, 552
Eco147I	AGGCCT	1 cut(s)	123
Eco24I	GRGCYC	2 cut(s)	560, 612
Eco53kI	GAGCTC	1 cut(s)	610
EcoICRI	GAGCTC	1 cut(s)	610
EcoT14I	CCWWGG	3 cut(s)	124, 316, 552
EcoT38I	GRGCYC	2 cut(s)	560, 612
ErhI	CCWWGG	3 cut(s)	124, 316, 552
FaeI	CATG	7 cut(s)	34, 161, 320, 340, 376, 478, 556
FaqI	GGGAC	2 cut(s)	413, 437
FatI	CATG	7 cut(s)	30, 157, 316, 336, 372, 474, 552
FauNDI	CATATG	1 cut(s)	379
FokI	GGATG	2 cut(s)	238, 271
FriOI	GRGCYC	2 cut(s)	560, 612
FspBI	CTAG	2 cut(s)	210, 599
GlaI	GCGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	432
HhaI	GCGC	1 cut(s)	238
Hin1I	GRCGYC	1 cut(s)	426
Hin1II	CATG	7 cut(s)	34, 161, 320, 340, 376, 478, 556
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HinfI	GANTC	3 cut(s)	512, 578, 615
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	4 cut(s)	173, 273, 365, 398
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	5 cut(s)	97, 152, 577, 614, 620
Hpy188III	TCNNGA	2 cut(s)	337, 599
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	3 cut(s)	70, 195, 497
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	1 cut(s)	466
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 318, 555
HpyF3I	CTNAG	2 cut(s)	404, 611
HpySE526I	ACGT	1 cut(s)	426
Hsp92I	GRCGYC	1 cut(s)	426
Hsp92II	CATG	7 cut(s)	34, 161, 320, 340, 376, 478, 556
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	2 cut(s)	147, 595
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	4 cut(s)	6, 22, 554, 607
LpnPI	CCDG	7 cut(s)	128, 430, 445, 484, 493, 508, 516
MaeI	CTAG	2 cut(s)	210, 599
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	2 cut(s)	566, 584
MalI	GATC	2 cut(s)	149, 597
MboI	GATC	2 cut(s)	147, 595
MboII	GAAGA	8 cut(s)	51, 54, 57, 60, 97, 157, 267, 270
MfeI	CAATTG	1 cut(s)	137
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	2 cut(s)	560, 612
MluCI	AATT	3 cut(s)	91, 137, 394
MlyI	GAGTC	2 cut(s)	506, 609
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	1 cut(s)	432
MunI	CAATTG	1 cut(s)	137
MwoI	GCNNNNNNNGC	3 cut(s)	242, 318, 555
NciI	CCSGG	1 cut(s)	432
NcoI	CCATGG	2 cut(s)	316, 552
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	2 cut(s)	147, 595
NlaIII	CATG	7 cut(s)	34, 161, 320, 340, 376, 478, 556
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	2 cut(s)	566, 584
PagI	TCATGA	1 cut(s)	336
PceI	AGGCCT	1 cut(s)	123
PciSI	GCTCTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	578
PleI	GAGTC	2 cut(s)	506, 609
PpsI	GAGTC	2 cut(s)	506, 609
Psp124BI	GAGCTC	1 cut(s)	612
PspN4I	GGNNCC	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	618
PsuI	RGATCY	1 cut(s)	595
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SacI	GAGCTC	1 cut(s)	612
SapI	GCTCTTC	1 cut(s)	80
Sau3AI	GATC	2 cut(s)	147, 595
SchI	GAGTC	2 cut(s)	506, 609
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	2 cut(s)	560, 612
SetI	ASST	7 cut(s)	49, 247, 429, 489, 502, 551, 612
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
SpeI	ACTAGT	1 cut(s)	209
Sse9I	AATT	3 cut(s)	91, 137, 394
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	345
SspMI	CTAG	2 cut(s)	210, 599
SstI	GAGCTC	1 cut(s)	612
StuI	AGGCCT	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	430
StyI	CCWWGG	3 cut(s)	124, 316, 552
TaiI	ACGT	1 cut(s)	429
TasI	AATT	3 cut(s)	91, 137, 394
TatI	WGTACW	1 cut(s)	407
TfiI	GAWTC	1 cut(s)	578
TseFI	GTSAC	2 cut(s)	566, 584
Tsp45I	GTSAC	2 cut(s)	566, 584
TspDTI	ATGAA	2 cut(s)	240, 375
XbaI	TCTAGA	1 cut(s)	598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XspI	CTAG	2 cut(s)	210, 599
ZraI	GACGTC	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.