Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005797

Physical Location & Seq

Genomic Coordinates Forward (+)

4760814 .. 4762284

Gene Structure 1471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016209

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGAAACGAAAGAGGAGGCGGATCGTCTTCTAGTTCTTCAAGGAAAGGGAAGAAGAGTAATTCGGACAAGCCGAAGCAACCGCAGAGAGGGCTTGGAGTTGCTCAATTAGAGAAGATCAGATTACATGGCCAAATGGGATTCATCAATCCTTACCCTACTAATAATTTCATCAATAACCAGCAGGTGGAGGATAACAGAGTGCAAGCAGCAGCTTATTCATCGTCTTTCGCTTCTTCGCAGTCCTCTTCATCTCCCTCAGTCTCTTATGGCTTCCACCCTAACATCATGATGGGGCTCGGTGAATATGATCAAAGAGCAAGCATCATATATGGTGATCCTTCCCAACTAAACAGTACAGCACCAAGATGGGAACCCAGCAATGCAATGTTAGAGCCGACCCAACAGTTTGTGCAACCAGGCATCACTACTAGACACCTCCTAAATCCACCAGCAGAAGTACTAGAGGAGTTTCATCACAAGAAGAGCAAAAAACATAGGAGTAATTCAATGGGCTCAAGCAGTCAGAATTCTGAATCAAGTGACTCTCAAGAAGTAGATTTGGAACTCAGACTCTCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

21.3

Weight (kDa)

8.86

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840
fragaria_vesca	FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660
malus_domestica	MD02G1057600.v1.1 MD15G1192000.v1.1
prunus_persica	Prupe.7G225200_v2.0.a1
pyrus_communis	pycom02g04670 pycom15g17180
rosa_chinensis	RchiOBHm_Chr2g0091291
rosa_laevigata	RLG00000016209
rosa_multiflora	Rmu_sc0002270.1_g000044
rosa_roxburghii	Rroxscaffold_2G00150250
rosa_rugosa	Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100
rosa_samantha	Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800
rosa_wichuraiana	Rw2G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	175
AccB7I	CCANNNNNTGG	1 cut(s)	187
AciI	CCGC	2 cut(s)	21, 83
AclWI	GGATC	2 cut(s)	31, 332
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	529
AfaI	GTAC	2 cut(s)	358, 462
AfiI	CCNNNNNNNGG	2 cut(s)	89, 187
AgsI	TTSAA	2 cut(s)	42, 510
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	268
AlwI	GGATC	2 cut(s)	31, 332
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	209, 212
ApoI	RAATTY	1 cut(s)	529
AsuHPI	GGTGA	2 cut(s)	314, 347
BalI	TGGCCA	1 cut(s)	132
BanII	GRGCYC	2 cut(s)	300, 518
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	221, 224
BccI	CCATC	2 cut(s)	286, 363
BciT130I	CCWGG	1 cut(s)	420
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	3 cut(s)	33, 432, 464
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	2 cut(s)	210, 213
BlsI	GCNGC	2 cut(s)	211, 214
BmcAI	AGTACT	1 cut(s)	462
Bme1390I	CCNGG	1 cut(s)	420
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	2 cut(s)	333, 432
BpiI	GAAGAC	1 cut(s)	21
BpuEI	CTTGAG	2 cut(s)	502, 534
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 187
Bse3DI	GCAATG	2 cut(s)	388, 393
BseBI	CCWGG	1 cut(s)	420
BseLI	CCNNNNNNNGG	2 cut(s)	89, 187
BseMI	GCAATG	2 cut(s)	388, 393
BseMII	CTCAG	2 cut(s)	273, 583
BseRI	GAGGAG	2 cut(s)	30, 482
BseXI	GCAGC	2 cut(s)	221, 224
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	1 cut(s)	132
BslI	CCNNNNNNNGG	2 cut(s)	89, 187
BsmAI	GTCTC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	300, 518
Bsp143I	GATC	4 cut(s)	23, 117, 310, 337
BspACI	CCGC	2 cut(s)	21, 83
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	272, 582
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	375
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	31, 332
BspQI	GCTCTTC	1 cut(s)	479
BsrDI	GCAATG	2 cut(s)	388, 393
BssMI	GATC	4 cut(s)	23, 117, 310, 337
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	356, 408
Bst6I	CTCTTC	3 cut(s)	50, 253, 479
BstC8I	GCNNGC	2 cut(s)	207, 322
BstDEI	CTNAG	2 cut(s)	259, 569
BstKTI	GATC	4 cut(s)	26, 120, 313, 340
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	4 cut(s)	23, 117, 310, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstNI	CCWGG	1 cut(s)	420
BstSCI	CCNGG	1 cut(s)	418
BstV1I	GCAGC	2 cut(s)	221, 224
BstV2I	GAAGAC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	207, 322
CciI	TCATGA	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	357, 461
CviAII	CATG	2 cut(s)	128, 289
CviJI	RGCY	8 cut(s)	73, 94, 132, 215, 273, 298, 397, 516
CviKI_1	RGCY	8 cut(s)	73, 94, 132, 215, 273, 298, 397, 516
CviQI	GTAC	2 cut(s)	357, 461
DdeI	CTNAG	2 cut(s)	259, 569
DpnI	GATC	4 cut(s)	25, 119, 312, 339
DpnII	GATC	4 cut(s)	23, 117, 310, 337
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	3 cut(s)	50, 253, 479
EarI	CTCTTC	3 cut(s)	50, 253, 479
EciI	GGCGGA	1 cut(s)	36
Eco24I	GRGCYC	2 cut(s)	300, 518
EcoRI	GAATTC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	418
EcoT38I	GRGCYC	2 cut(s)	300, 518
FaeI	CATG	2 cut(s)	131, 292
FaiI	YATR	8 cut(s)	129, 270, 290, 309, 329, 331, 333, 498
FatI	CATG	2 cut(s)	127, 288
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	210, 213
FriOI	GRGCYC	2 cut(s)	300, 518
Fsp4HI	GCNGC	2 cut(s)	210, 213
FspBI	CTAG	3 cut(s)	33, 432, 464
GluI	GCNGC	2 cut(s)	210, 213
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	131, 292
HinfI	GANTC	4 cut(s)	141, 536, 545, 573
HphI	GGTGA	2 cut(s)	314, 347
Hpy188I	TCNGA	5 cut(s)	67, 122, 528, 535, 572
Hpy188III	TCNNGA	2 cut(s)	289, 551
HpyAV	CCTTC	1 cut(s)	351
HpyCH4III	ACNGT	2 cut(s)	356, 408
HpyCH4V	TGCA	3 cut(s)	205, 386, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	2 cut(s)	259, 569
Hsp92II	CATG	2 cut(s)	131, 292
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	23, 117, 310, 337
LguI	GCTCTTC	1 cut(s)	479
LpnPI	CCDG	6 cut(s)	170, 194, 391, 405, 432, 465
Lsp1109I	GCAGC	2 cut(s)	221, 224
LweI	GCATC	2 cut(s)	333, 432
MaeI	CTAG	3 cut(s)	33, 432, 464
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	4 cut(s)	25, 119, 312, 339
MboI	GATC	4 cut(s)	23, 117, 310, 337
MboII	GAAGA	8 cut(s)	21, 30, 64, 67, 127, 228, 240, 496
MhlI	GDGCHC	2 cut(s)	300, 518
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	5 cut(s)	61, 107, 166, 505, 529
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	539, 567
MnlI	CCTC	8 cut(s)	8, 11, 83, 184, 256, 268, 449, 460
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	583
MslI	CAYNNNNRTG	2 cut(s)	290, 367
Msp20I	TGGCCA	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	91
NdeII	GATC	4 cut(s)	23, 117, 310, 337
NlaIII	CATG	2 cut(s)	131, 292
NlaIV	GGNNCC	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	542
PagI	TCATGA	1 cut(s)	288
PaqCI	CACCTGC	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	141, 536
PflMI	CCANNNNNTGG	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	211, 214
PleI	GAGTC	2 cut(s)	539, 567
PpsI	GAGTC	2 cut(s)	539, 567
Psp6I	CCWGG	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	1 cut(s)	375
RsaI	GTAC	2 cut(s)	358, 462
RsaNI	GTAC	2 cut(s)	357, 461
RseI	CAYNNNNRTG	2 cut(s)	290, 367
SapI	GCTCTTC	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	583
SatI	GCNGC	2 cut(s)	210, 213
Sau3AI	GATC	4 cut(s)	23, 117, 310, 337
ScaI	AGTACT	1 cut(s)	462
SchI	GAGTC	2 cut(s)	539, 567
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	2 cut(s)	300, 518
SetI	ASST	3 cut(s)	189, 217, 441
SfaNI	GCATC	2 cut(s)	333, 432
SmiMI	CAYNNNNRTG	2 cut(s)	290, 367
SmlI	CTYRAG	2 cut(s)	517, 549
SmoI	CTYRAG	2 cut(s)	517, 549
Sse9I	AATT	5 cut(s)	61, 107, 166, 505, 529
SsiI	CCGC	2 cut(s)	21, 83
SspMI	CTAG	3 cut(s)	33, 432, 464
StyD4I	CCNGG	1 cut(s)	418
TaaI	ACNGT	2 cut(s)	356, 408
TasI	AATT	5 cut(s)	61, 107, 166, 505, 529
TatI	WGTACW	2 cut(s)	356, 460
TfiI	GAWTC	2 cut(s)	141, 536
Tru1I	TTAA	1 cut(s)	583
Tru9I	TTAA	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	2 cut(s)	209, 212
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	5 cut(s)	133, 160, 210, 240, 464
Van91I	CCANNNNNTGG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	529
XspI	CTAG	3 cut(s)	33, 432, 464
ZrmI	AGTACT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.