Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005797

Physical Location & Seq

Genomic Coordinates Forward (+)

3044421 .. 3046536

Gene Structure 2116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04670.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGGAGCAGTTATTTTGGGGAGCCAAACATGGGAGGAGGTGGTGGTGGTTCTTCTTCTTCTTCTTCTTCAAGGAAAGGAAAGAAGAGTAATTCAGACAAGCCAAAGCAACCCCAGAGAGGCCTTGGAGTGGCTCAATTGGAGAAGATCAGATTACACGGTCAAATGGGTTCCACTTATCATCCTTCCCTCCACTCTCCATACTCCACTAGTTTCAACAACGAGGACACCAGAGTGCAAACAGCTTATTCATCCCTACCATCATCATCTTTCTCTTCTTCACCATCCTCCACATCTTCCCCACTCTCTTATGGCTTCCACCCCAACATCATGATGGGCGGTCTTGGTGAATATGAAAGAGCAAACATGATATATGGTGGTGATCATAATTCCCAACATAGTAAAACAGCAGGATGGGACGTCATCCTAGACACCAAACATTTTGTGCAACCGAGCATGACTGGAGACCTTCTAAATCAAACTCCAGTAGAGGACTCTCAGCACAGGAAGACCGGAAAACATAGAAGTAGCTCCATGGACTCAAGCAGTCACAACTCTGAATCAAGTGACACCCAAGATCTAGATTTGGAGCTCAGACTCTCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

21.75

Weight (kDa)

6.79

Isoelectric Point (pI)

58.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840
fragaria_vesca	FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660
malus_domestica	MD02G1057600.v1.1 MD15G1192000.v1.1
prunus_persica	Prupe.7G225200_v2.0.a1
pyrus_communis	pycom02g04670 pycom15g17180
rosa_chinensis	RchiOBHm_Chr2g0091291
rosa_laevigata	RLG00000016209
rosa_multiflora	Rmu_sc0002270.1_g000044
rosa_roxburghii	Rroxscaffold_2G00150250
rosa_rugosa	Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100
rosa_samantha	Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800
rosa_wichuraiana	Rw2G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	423
AciI	CCGC	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	420
AfiI	CCNNNNNNNGG	3 cut(s)	32, 119, 130
AgsI	TTSAA	2 cut(s)	72, 217
AhlI	ACTAGT	1 cut(s)	209
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	3 cut(s)	245, 531, 592
AluI	AGCT	3 cut(s)	245, 531, 592
Alw21I	GWGCWC	1 cut(s)	594
Alw26I	GTCTC	1 cut(s)	459
AoxI	GGCC	1 cut(s)	121
AsuHPI	GGTGA	3 cut(s)	273, 359, 392
BanII	GRGCYC	1 cut(s)	594
BbsI	GAAGAC	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	594
BccI	CCATC	4 cut(s)	268, 292, 328, 408
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	459
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	3 cut(s)	210, 428, 581
BglII	AGATCT	1 cut(s)	577
BmiI	GGNNCC	2 cut(s)	24, 172
BpiI	GAAGAC	1 cut(s)	515
BpmI	CTGGAG	2 cut(s)	468, 483
BpuEI	CTTGAG	1 cut(s)	526
BsaHI	GRCGYC	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	459
BsaJI	CCNNGG	2 cut(s)	124, 534
BsaWI	WCCGGW	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 119, 130
Bse1I	ACTGG	2 cut(s)	466, 485
BseDI	CCNNGG	2 cut(s)	124, 534
BseGI	GGATG	5 cut(s)	181, 251, 284, 419, 423
BseLI	CCNNNNNNNGG	3 cut(s)	32, 119, 130
BseMII	CTCAG	2 cut(s)	512, 607
BseNI	ACTGG	2 cut(s)	466, 485
BseRI	GAGGAG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	594
BsiSI	CCGG	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	3 cut(s)	32, 119, 130
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp143I	GATC	3 cut(s)	147, 382, 577
Bsp19I	CCATGG	1 cut(s)	534
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	2 cut(s)	511, 606
BspHI	TCATGA	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	24, 172
BspTNI	GGTCTC	1 cut(s)	459
BsrI	ACTGG	2 cut(s)	466, 485
BssECI	CCNNGG	2 cut(s)	124, 534
BssMI	GATC	3 cut(s)	147, 382, 577
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	2 cut(s)	124, 534
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	2 cut(s)	80, 280
BstACI	GRCGYC	1 cut(s)	420
BstDEI	CTNAG	2 cut(s)	498, 593
BstDSI	CCRYGG	1 cut(s)	534
BstF5I	GGATG	5 cut(s)	181, 251, 284, 419, 423
BstKTI	GATC	3 cut(s)	150, 385, 580
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	3 cut(s)	147, 382, 577
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	534
BtsCI	GGATG	5 cut(s)	181, 251, 284, 419, 423
CciI	TCATGA	1 cut(s)	330
CviAII	CATG	5 cut(s)	31, 331, 367, 457, 535
CviJI	RGCY	8 cut(s)	25, 103, 123, 134, 245, 315, 531, 592
CviKI_1	RGCY	8 cut(s)	25, 103, 123, 134, 245, 315, 531, 592
DdeI	CTNAG	2 cut(s)	498, 593
DpnI	GATC	3 cut(s)	149, 384, 579
DpnII	GATC	3 cut(s)	147, 382, 577
Eam1104I	CTCTTC	2 cut(s)	80, 280
EarI	CTCTTC	2 cut(s)	80, 280
Ecl136II	GAGCTC	1 cut(s)	592
Eco130I	CCWWGG	2 cut(s)	124, 534
Eco147I	AGGCCT	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	594
Eco31I	GGTCTC	1 cut(s)	459
Eco53kI	GAGCTC	1 cut(s)	592
EcoICRI	GAGCTC	1 cut(s)	592
EcoT14I	CCWWGG	2 cut(s)	124, 534
EcoT38I	GRGCYC	1 cut(s)	594
ErhI	CCWWGG	2 cut(s)	124, 534
FaeI	CATG	5 cut(s)	34, 334, 370, 460, 538
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	5 cut(s)	30, 330, 366, 456, 534
FbaI	TGATCA	1 cut(s)	382
FokI	GGATG	5 cut(s)	168, 238, 271, 410, 426
FriOI	GRGCYC	1 cut(s)	594
FspBI	CTAG	3 cut(s)	210, 428, 581
GsuI	CTGGAG	2 cut(s)	468, 483
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	513
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	5 cut(s)	34, 334, 370, 460, 538
HinfI	GANTC	4 cut(s)	494, 539, 560, 597
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	3 cut(s)	273, 359, 392
Hpy188I	TCNGA	4 cut(s)	97, 152, 559, 596
Hpy188III	TCNNGA	2 cut(s)	331, 581
HpyAV	CCTTC	2 cut(s)	195, 479
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	2 cut(s)	238, 448
HpyF3I	CTNAG	2 cut(s)	498, 593
HpySE526I	ACGT	1 cut(s)	420
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	5 cut(s)	34, 334, 370, 460, 538
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	147, 382, 577
LmnI	GCTCC	4 cut(s)	6, 22, 536, 589
LpnPI	CCDG	7 cut(s)	128, 244, 396, 447, 490, 498, 526
MaeI	CTAG	3 cut(s)	210, 428, 581
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	2 cut(s)	548, 566
MalI	GATC	3 cut(s)	149, 384, 579
MboI	GATC	3 cut(s)	147, 382, 577
MfeI	CAATTG	1 cut(s)	137
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	594
MluCI	AATT	3 cut(s)	91, 137, 388
MlyI	GAGTC	3 cut(s)	488, 533, 591
MnlI	CCTC	7 cut(s)	29, 32, 113, 200, 217, 298, 484
MslI	CAYNNNNRTG	2 cut(s)	233, 332
MspI	CCGG	1 cut(s)	513
MunI	CAATTG	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	534
NdeII	GATC	3 cut(s)	147, 382, 577
NlaIII	CATG	5 cut(s)	34, 334, 370, 460, 538
NlaIV	GGNNCC	2 cut(s)	24, 172
NmuCI	GTSAC	2 cut(s)	548, 566
OliI	CACNNNNGTG	1 cut(s)	233
PagI	TCATGA	1 cut(s)	330
PceI	AGGCCT	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	560
PleI	GAGTC	3 cut(s)	488, 533, 591
PpsI	GAGTC	3 cut(s)	488, 533, 591
Psp124BI	GAGCTC	1 cut(s)	594
PspN4I	GGNNCC	2 cut(s)	24, 172
PsuI	RGATCY	1 cut(s)	577
RseI	CAYNNNNRTG	2 cut(s)	233, 332
SacI	GAGCTC	1 cut(s)	594
Sau3AI	GATC	3 cut(s)	147, 382, 577
SchI	GAGTC	3 cut(s)	488, 533, 591
SduI	GDGCHC	1 cut(s)	594
SetI	ASST	6 cut(s)	43, 247, 423, 471, 533, 594
SmiMI	CAYNNNNRTG	2 cut(s)	233, 332
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
SpeI	ACTAGT	1 cut(s)	209
Sse9I	AATT	3 cut(s)	91, 137, 388
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	3 cut(s)	210, 428, 581
SstI	GAGCTC	1 cut(s)	594
StuI	AGGCCT	1 cut(s)	123
StyI	CCWWGG	2 cut(s)	124, 534
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	423
TasI	AATT	3 cut(s)	91, 137, 388
TfiI	GAWTC	1 cut(s)	560
TseFI	GTSAC	2 cut(s)	548, 566
Tsp45I	GTSAC	2 cut(s)	548, 566
TspDTI	ATGAA	2 cut(s)	240, 369
XbaI	TCTAGA	1 cut(s)	580
XcmI	CCANNNNNNNNNTGG	2 cut(s)	122, 331
XspI	CTAG	3 cut(s)	210, 428, 581
ZraI	GACGTC	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.