Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005797

Physical Location & Seq

Genomic Coordinates Reverse (-)

4552923 .. 4554439

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G004870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGGAGCAGTTATTTTGGGGAGCCAAACATGGGAAACGAAAGAGGAGGCGGATCGTCTTCTAGTTCTTCAAGGAAAGGGAAGAAGAGTAATTCGGACAAGCCGAAGCAACCGCAGAGAGGGCTTGGAGTTGCTCAATTAGAGAAGATCAGATTACATGGCCAAATGGGATTCATCAATCCTTACCCTACTAATAATTTCATCAATAACGTGGAGGATAACAGAGTGCAAGCAGCAGCTTATTCATCGTCTTTCGCTTCTTCGCAGTCCTCTTCATCTCCCTCAGTCTCTTATGGCTTCCACCCTAACATCATGATGGGGCTCGGTGAATATGATCAAAGAGCAAGCATCATATATGGTGATCCTTCCCAACTAAACAGTACAACACCAAGATGGGAACCCAGTAATGCCATGTTAGAGCCGACCCAACAGTTGGTGCAACCAGGCATCACTACTAGACACCTCCTAAATCCACCTGCAGAAGAGTTTCATCACAAGAAGAGCAAAAAACATAGAAGTAATTCAATGGGCTCAAGCAGTCAGAATTCTGAATCAAGTGACTCTCAAGAAGTAGATTTGGAACTCAGACTCTCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

21.77

Weight (kDa)

8.83

Isoelectric Point (pI)

56.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840
fragaria_vesca	FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660
malus_domestica	MD02G1057600.v1.1 MD15G1192000.v1.1
prunus_persica	Prupe.7G225200_v2.0.a1
pyrus_communis	pycom02g04670 pycom15g17180
rosa_chinensis	RchiOBHm_Chr2g0091291
rosa_laevigata	RLG00000016209
rosa_multiflora	Rmu_sc0002270.1_g000044
rosa_roxburghii	Rroxscaffold_2G00150250
rosa_rugosa	Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100
rosa_samantha	Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800
rosa_wichuraiana	Rw2G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	484
Acc36I	ACCTGC	1 cut(s)	484
AccB7I	CCANNNNNTGG	1 cut(s)	433
AciI	CCGC	2 cut(s)	51, 113
AclWI	GGATC	2 cut(s)	61, 356
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	544
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	3 cut(s)	32, 119, 433
AgsI	TTSAA	2 cut(s)	72, 525
AjnI	CCWGG	1 cut(s)	442
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	61, 356
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	233, 236
ApoI	RAATTY	1 cut(s)	544
Asp700I	GAANNNNTTC	2 cut(s)	486, 520
AsuHPI	GGTGA	2 cut(s)	338, 371
BalI	TGGCCA	1 cut(s)	162
BanII	GRGCYC	2 cut(s)	324, 533
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	245, 248
BccI	CCATC	2 cut(s)	310, 387
BciT130I	CCWGG	1 cut(s)	444
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	63, 456
BfmI	CTRYAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	2 cut(s)	234, 237
BlsI	GCNGC	2 cut(s)	235, 238
Bme1390I	CCNGG	1 cut(s)	444
BmiI	GGNNCC	2 cut(s)	24, 399
BmrFI	CCNGG	1 cut(s)	444
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	2 cut(s)	357, 456
BmuI	ACTGGG	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	51
BpuEI	CTTGAG	2 cut(s)	517, 549
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 119, 433
Bse1I	ACTGG	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	444
BseLI	CCNNNNNNNGG	3 cut(s)	32, 119, 433
BseMII	CTCAG	2 cut(s)	297, 598
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	245, 248
BshFI	GGCC	1 cut(s)	162
BslI	CCNNNNNNNGG	3 cut(s)	32, 119, 433
BsmAI	GTCTC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	2 cut(s)	324, 533
Bsp143I	GATC	4 cut(s)	53, 147, 334, 361
BspACI	CCGC	2 cut(s)	51, 113
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	2 cut(s)	296, 597
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	24, 399
BspMAI	CTGCAG	1 cut(s)	481
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	2 cut(s)	61, 356
BspQI	GCTCTTC	1 cut(s)	494
BsrI	ACTGG	1 cut(s)	402
BssMI	GATC	4 cut(s)	53, 147, 334, 361
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	2 cut(s)	380, 432
Bst6I	CTCTTC	4 cut(s)	80, 277, 477, 494
BstC8I	GCNNGC	2 cut(s)	231, 346
BstDEI	CTNAG	2 cut(s)	283, 584
BstKTI	GATC	4 cut(s)	56, 150, 337, 364
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	4 cut(s)	53, 147, 334, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	442
BstSFI	CTRYAG	1 cut(s)	477
BstV1I	GCAGC	2 cut(s)	245, 248
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	231, 346
CciI	TCATGA	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	4 cut(s)	31, 158, 313, 412
CviJI	RGCY	9 cut(s)	25, 103, 124, 162, 239, 297, 322, 421, 531
CviKI_1	RGCY	9 cut(s)	25, 103, 124, 162, 239, 297, 322, 421, 531
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	2 cut(s)	283, 584
DpnI	GATC	4 cut(s)	55, 149, 336, 363
DpnII	GATC	4 cut(s)	53, 147, 334, 361
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	4 cut(s)	80, 277, 477, 494
EarI	CTCTTC	4 cut(s)	80, 277, 477, 494
EciI	GGCGGA	1 cut(s)	66
Eco24I	GRGCYC	2 cut(s)	324, 533
EcoRI	GAATTC	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	442
EcoT38I	GRGCYC	2 cut(s)	324, 533
FaeI	CATG	4 cut(s)	34, 161, 316, 415
FatI	CATG	4 cut(s)	30, 157, 312, 411
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	234, 237
FriOI	GRGCYC	2 cut(s)	324, 533
Fsp4HI	GCNGC	2 cut(s)	234, 237
FspBI	CTAG	2 cut(s)	63, 456
GluI	GCNGC	2 cut(s)	234, 237
HaeIII	GGCC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	34, 161, 316, 415
HinfI	GANTC	4 cut(s)	171, 551, 560, 588
HphI	GGTGA	2 cut(s)	338, 371
Hpy188I	TCNGA	5 cut(s)	97, 152, 543, 550, 587
Hpy188III	TCNNGA	2 cut(s)	313, 566
HpyAV	CCTTC	1 cut(s)	375
HpyCH4III	ACNGT	2 cut(s)	380, 432
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	3 cut(s)	229, 439, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	283, 584
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	4 cut(s)	34, 161, 316, 415
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	53, 147, 334, 361
LguI	GCTCTTC	1 cut(s)	494
LmnI	GCTCC	2 cut(s)	6, 22
LpnPI	CCDG	4 cut(s)	415, 429, 456, 489
Lsp1109I	GCAGC	2 cut(s)	245, 248
LweI	GCATC	2 cut(s)	357, 456
MaeI	CTAG	2 cut(s)	63, 456
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	4 cut(s)	55, 149, 336, 363
MboI	GATC	4 cut(s)	53, 147, 334, 361
MboII	GAAGA	9 cut(s)	51, 60, 94, 97, 157, 252, 264, 494, 511
MhlI	GDGCHC	2 cut(s)	324, 533
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	5 cut(s)	91, 137, 196, 520, 544
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	2 cut(s)	554, 582
MnlI	CCTC	7 cut(s)	38, 41, 113, 208, 280, 292, 473
Mox20I	TGGCCA	1 cut(s)	162
MroXI	GAANNNNTTC	2 cut(s)	486, 520
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	1 cut(s)	598
MslI	CAYNNNNRTG	2 cut(s)	314, 391
Msp20I	TGGCCA	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	4 cut(s)	53, 147, 334, 361
NlaIII	CATG	4 cut(s)	34, 161, 316, 415
NlaIV	GGNNCC	2 cut(s)	24, 399
NmuCI	GTSAC	1 cut(s)	557
PagI	TCATGA	1 cut(s)	312
PaqCI	CACCTGC	1 cut(s)	484
PciSI	GCTCTTC	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PdmI	GAANNNNTTC	2 cut(s)	486, 520
PfeI	GAWTC	2 cut(s)	171, 551
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	2 cut(s)	235, 238
PleI	GAGTC	2 cut(s)	554, 582
PpsI	GAGTC	2 cut(s)	554, 582
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	2 cut(s)	24, 399
PstI	CTGCAG	1 cut(s)	481
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
RseI	CAYNNNNRTG	2 cut(s)	314, 391
SapI	GCTCTTC	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	598
SatI	GCNGC	2 cut(s)	234, 237
Sau3AI	GATC	4 cut(s)	53, 147, 334, 361
SchI	GAGTC	2 cut(s)	554, 582
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	2 cut(s)	324, 533
SetI	ASST	4 cut(s)	213, 241, 465, 478
SfaNI	GCATC	2 cut(s)	357, 456
SfcI	CTRYAG	1 cut(s)	477
SmiMI	CAYNNNNRTG	2 cut(s)	314, 391
SmlI	CTYRAG	2 cut(s)	532, 564
SmoI	CTYRAG	2 cut(s)	532, 564
Sse9I	AATT	5 cut(s)	91, 137, 196, 520, 544
SsiI	CCGC	2 cut(s)	51, 113
SspMI	CTAG	2 cut(s)	63, 456
StyD4I	CCNGG	1 cut(s)	442
TaaI	ACNGT	2 cut(s)	380, 432
TaiI	ACGT	1 cut(s)	213
TasI	AATT	5 cut(s)	91, 137, 196, 520, 544
TatI	WGTACW	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	171, 551
Tru1I	TTAA	1 cut(s)	598
Tru9I	TTAA	1 cut(s)	598
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	2 cut(s)	233, 236
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	5 cut(s)	163, 190, 234, 264, 479
Van91I	CCANNNNNTGG	1 cut(s)	433
XapI	RAATTY	1 cut(s)	544
XmnI	GAANNNNTTC	2 cut(s)	486, 520
XspI	CTAG	2 cut(s)	63, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.