Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005797

Physical Location & Seq

Genomic Coordinates Forward (+)

14240666 .. 14242679

Gene Structure 2014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGTAGTAGTTTTTTCGGGAGACCAAAAATGGGTGGATCTTCGTCATCATCACCAACATCTTCTTCTTCTTCTCCGGCAAAGAGAGGGAAGAACAAGAATGGTTCTGACAAGCCTAAGCAGCCTCAGAGAGGTCTCGGCGTCGCGCAGTTAGAGAAGATTAGATTACACGGCGAGTATAACTGCAACAGCTTCAATACCTACCCTTCTTATCATCCCTCAACTTATCAGGAGGATGTGAGGATCCAAGGAGGATATCCATCCATACCATCGTCATCACCATCCTTTTCATATGCATCATCATCACCACCACCAGCTCCTTATGGCTTTCATCCGAACATGATGATGAATGCAAATAATGATCAATACGAGAGAACAACCATAAGATACGGAGATTCTCAGCCTCACAGAGCACCAAGTTGGAACCCGAGCTACGGCATCTTGGAGAGCCAGCATTTTGTGGAACCAAACACAACCAGACACTTCTTACATGAGGATCAGAGAAATATATCGTTGGGATCGGGTATTCAGAACTTCGAAACCAGTGAAGCAAACGAGCTAGATTTGGAATTGAGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

21.41

Weight (kDa)

7.89

Isoelectric Point (pI)

62.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840
fragaria_vesca	FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660
malus_domestica	MD02G1057600.v1.1 MD15G1192000.v1.1
prunus_persica	Prupe.7G225200_v2.0.a1
pyrus_communis	pycom02g04670 pycom15g17180
rosa_chinensis	RchiOBHm_Chr2g0091291
rosa_laevigata	RLG00000016209
rosa_multiflora	Rmu_sc0002270.1_g000044
rosa_roxburghii	Rroxscaffold_2G00150250
rosa_rugosa	Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100
rosa_samantha	Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800
rosa_wichuraiana	Rw2G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	146
AclWI	GGATC	5 cut(s)	46, 238, 251, 504, 526
AcyI	GRCGYC	1 cut(s)	141
AfiI	CCNNNNNNNGG	3 cut(s)	32, 131, 434
AgsI	TTSAA	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AluBI	AGCT	4 cut(s)	192, 317, 432, 559
AluI	AGCT	4 cut(s)	192, 317, 432, 559
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	2 cut(s)	16, 140
AlwI	GGATC	5 cut(s)	46, 238, 251, 504, 526
Ama87I	CYCGRG	1 cut(s)	427
ApeKI	GCWGC	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	148
AsuHPI	GGTGA	3 cut(s)	45, 270, 297
AsuII	TTCGAA	1 cut(s)	537
AvaI	CYCGRG	1 cut(s)	427
BamHI	GGATCC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	3 cut(s)	268, 277, 289
BceAI	ACGGC	2 cut(s)	187, 451
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	16, 140
BfaI	CTAG	1 cut(s)	560
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
BmeT110I	CYCGRG	1 cut(s)	427
BmiI	GGNNCC	3 cut(s)	245, 425, 465
BmsI	GCATC	2 cut(s)	305, 447
Bpu10I	CCTNAGC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	537
BsaBI	GATNNNNATC	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	141
BsaI	GGTCTC	2 cut(s)	16, 140
BsaJI	CCNNGG	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 131, 434
Bse1I	ACTGG	1 cut(s)	543
Bse8I	GATNNNNATC	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	5 cut(s)	214, 241, 260, 281, 331
BseJI	GATNNNNATC	1 cut(s)	259
BseLI	CCNNNNNNNGG	3 cut(s)	32, 131, 434
BseMII	CTCAG	2 cut(s)	140, 413
BseNI	ACTGG	1 cut(s)	543
BseXI	GCAGC	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	3 cut(s)	32, 131, 434
BsmAI	GTCTC	2 cut(s)	16, 140
BsmI	GAATGC	1 cut(s)	355
Bso31I	GGTCTC	2 cut(s)	16, 140
BsoBI	CYCGRG	1 cut(s)	427
Bsp119I	TTCGAA	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp143I	GATC	5 cut(s)	38, 243, 361, 496, 518
BspCNI	CTCAG	2 cut(s)	139, 412
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	3 cut(s)	245, 425, 465
BspPI	GGATC	5 cut(s)	46, 238, 251, 504, 526
BspT104I	TTCGAA	1 cut(s)	537
BspTNI	GGTCTC	2 cut(s)	16, 140
BsrI	ACTGG	1 cut(s)	543
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	5 cut(s)	38, 243, 361, 496, 518
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	247
BstACI	GRCGYC	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	452
BstDEI	CTNAG	3 cut(s)	117, 126, 399
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstF5I	GGATG	5 cut(s)	214, 241, 260, 281, 331
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	5 cut(s)	41, 246, 364, 499, 521
BstMAI	GTCTC	2 cut(s)	16, 140
BstMBI	GATC	5 cut(s)	38, 243, 361, 496, 518
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	133
BstX2I	RGATCY	2 cut(s)	38, 243
BstYI	RGATCY	2 cut(s)	38, 243
BtsCI	GGATG	5 cut(s)	214, 241, 260, 281, 331
BtsIMutI	CAGTG	1 cut(s)	550
Cac8I	GCNNGC	1 cut(s)	452
CfoI	GCGC	1 cut(s)	148
CseI	GACGC	1 cut(s)	130
CviAII	CATG	2 cut(s)	340, 491
CviJI	RGCY	9 cut(s)	115, 124, 192, 317, 327, 403, 432, 450, 559
CviKI_1	RGCY	9 cut(s)	115, 124, 192, 317, 327, 403, 432, 450, 559
DdeI	CTNAG	3 cut(s)	117, 126, 399
DpnI	GATC	5 cut(s)	40, 245, 363, 498, 520
DpnII	GATC	5 cut(s)	38, 243, 361, 496, 518
Eco130I	CCWWGG	1 cut(s)	247
Eco31I	GGTCTC	2 cut(s)	16, 140
Eco32I	GATATC	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	427
EcoNI	CCTNNNNNAGG	1 cut(s)	129
EcoRV	GATATC	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	2 cut(s)	343, 494
FaiI	YATR	9 cut(s)	180, 266, 292, 294, 324, 341, 383, 492, 509
FatI	CATG	2 cut(s)	339, 490
FauNDI	CATATG	1 cut(s)	292
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	1 cut(s)	122
FokI	GGATG	5 cut(s)	201, 247, 248, 268, 318
Fsp4HI	GCNGC	1 cut(s)	122
FspBI	CTAG	1 cut(s)	560
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	122
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	343, 494
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	1 cut(s)	395
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	3 cut(s)	45, 270, 297
Hpy188I	TCNGA	5 cut(s)	109, 129, 336, 501, 531
Hpy188III	TCNNGA	2 cut(s)	19, 230
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	216
HpyCH4V	TGCA	3 cut(s)	186, 296, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	3 cut(s)	117, 126, 399
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	343, 494
HspAI	GCGC	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	5 cut(s)	38, 243, 361, 496, 518
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	6 cut(s)	90, 215, 327, 464, 490, 556
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	2 cut(s)	305, 447
MaeI	CTAG	1 cut(s)	560
MalI	GATC	5 cut(s)	40, 245, 363, 498, 520
MboI	GATC	5 cut(s)	38, 243, 361, 496, 518
MboII	GAAGA	7 cut(s)	33, 54, 57, 60, 63, 103, 169
MflI	RGATCY	2 cut(s)	38, 243
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	9 cut(s)	80, 125, 135, 226, 229, 234, 245, 414, 487
Mph1103I	ATGCAT	1 cut(s)	298
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	1 cut(s)	77
Mva1269I	GAATGC	1 cut(s)	355
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	5 cut(s)	38, 243, 361, 496, 518
NlaIII	CATG	2 cut(s)	343, 494
NlaIV	GGNNCC	3 cut(s)	245, 425, 465
NmeAIII	GCCGAG	1 cut(s)	117
NsiI	ATGCAT	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	537
PctI	GAATGC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	123
PspN4I	GGNNCC	3 cut(s)	245, 425, 465
PsrI	GAACNNNNNNTAC	2 cut(s)	416, 448
PsuI	RGATCY	2 cut(s)	38, 243
RseI	CAYNNNNRTG	1 cut(s)	344
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	5 cut(s)	38, 243, 361, 496, 518
SduI	GDGCHC	1 cut(s)	415
SetI	ASST	6 cut(s)	136, 194, 203, 319, 434, 561
SfaNI	GCATC	2 cut(s)	305, 447
SfuI	TTCGAA	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	1 cut(s)	569
SspMI	CTAG	1 cut(s)	560
StyI	CCWWGG	1 cut(s)	247
TaqI	TCGA	1 cut(s)	537
TasI	AATT	1 cut(s)	569
TfiI	GAWTC	1 cut(s)	395
TscAI	CASTG	1 cut(s)	550
TseI	GCWGC	1 cut(s)	121
TspDTI	ATGAA	3 cut(s)	279, 320, 362
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	1 cut(s)	550
XagI	CCTNNNNNAGG	1 cut(s)	129
XspI	CTAG	1 cut(s)	560
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.