Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005797

Physical Location & Seq

Genomic Coordinates Reverse (-)

1369093 .. 1369626

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0016100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGCGACCACCCTTCAATGCTCATGAGGGACAGTTATGACCATGATCAAAGAGAAGTAGGCATCGATGGCTATGAAGAGGATGGCCAGGCTTGTTATCATGGCTGTTTCGGGGTTTTCAGGTTTCCGTGGAAGCAAAGCAGCAGCGAGAATGAAGGTAAGCATCTATTGGGAGGATCAGGATGTAACTTTAGCACCAAGGAGGTGACTTGGTGGAGGAAGAAGCTGAACAAGGCTAGGGAGTTTACGGAGGTTTATGGAGGGCCCAAGTGGAAGAACTTGGTTAGGAAGATTGGTGCATATTGCAGGCGGTGTAGGAAGCGGAAAGTTAGATTGTGCGAGAAAAAGAAGCCAAAGAATAGGTTCCAGTATGATATGAATAGCTATAATCTCAATTTTGATAACGGCAGTGAAGGTAGAGATGGGGAGAATCCGGTTGCTAATTTCTCAGCAAGGTTTGCAGCTCCTTCGAGTTTGGTTTCTCAGCAGGGTCCGGTTGTTGGTGTACATGCTTCTGAAGAATCTGAGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

20.23

Weight (kDa)

9.0

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20080 AT2G20080 AT2G20080 AT4G28840 AT4G28840 AT4G28840
fragaria_vesca	FvH4_1g05660 FvH4_1g05660 FvH4_1g05660 FvH4_1g05660
malus_domestica	MD02G1057600.v1.1 MD15G1192000.v1.1
prunus_persica	Prupe.7G225200_v2.0.a1
pyrus_communis	pycom02g04670 pycom15g17180
rosa_chinensis	RchiOBHm_Chr2g0091291
rosa_laevigata	RLG00000016209
rosa_multiflora	Rmu_sc0002270.1_g000044
rosa_roxburghii	Rroxscaffold_2G00150250
rosa_rugosa	Rorug02G0015900 Rorug02G0016000 Rorug02G0016000 Rorug02G0016100
rosa_samantha	Rh2AG061200 Rh2BG060300 Rh2CG062200 Rh2DG060800
rosa_wichuraiana	Rw2G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	310, 322
AclWI	GGATC	1 cut(s)	184
AcoI	YGGCCR	1 cut(s)	85
AfaI	GTAC	1 cut(s)	507
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	1 cut(s)	18
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	3 cut(s)	226, 384, 464
AluI	AGCT	3 cut(s)	226, 384, 464
AlwI	GGATC	1 cut(s)	184
AoxI	GGCC	2 cut(s)	85, 263
ApaI	GGGCCC	1 cut(s)	267
ApeKI	GCWGC	3 cut(s)	141, 144, 461
Asp700I	GAANNNNTTC	1 cut(s)	362
AspS9I	GGNCC	3 cut(s)	263, 264, 491
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	267
BalI	TGGCCA	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	153, 156, 473
BccI	CCATC	3 cut(s)	62, 77, 416
BceAI	ACGGC	1 cut(s)	421
BcgI	CGANNNNNNTGC	2 cut(s)	450, 484
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	1 cut(s)	46
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	3 cut(s)	142, 145, 462
BlsI	GCNGC	3 cut(s)	143, 146, 463
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	3 cut(s)	263, 264, 491
BmiI	GGNNCC	3 cut(s)	265, 365, 492
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	72, 172
Bsa29I	ATCGAT	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	128, 198
BsaWI	WCCGGW	2 cut(s)	433, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	128, 198
BseGI	GGATG	2 cut(s)	88, 188
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	3 cut(s)	462, 497, 516
BseNI	ACTGG	1 cut(s)	367
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	3 cut(s)	153, 156, 473
BshFI	GGCC	2 cut(s)	87, 265
BshVI	ATCGAT	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	434, 494
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	87, 265
Bsp120I	GGGCCC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp1407I	TGTACA	1 cut(s)	505
Bsp143I	GATC	2 cut(s)	46, 176
BspACI	CCGC	2 cut(s)	310, 322
BspANI	GGCC	2 cut(s)	87, 265
BspCNI	CTCAG	3 cut(s)	461, 496, 517
BspDI	ATCGAT	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	3 cut(s)	265, 365, 492
BspPI	GGATC	1 cut(s)	184
BsrGI	TGTACA	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	128, 198
BssMI	GATC	2 cut(s)	46, 176
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstAUI	TGTACA	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	3 cut(s)	448, 483, 525
BstDSI	CCRYGG	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	88, 188
BstKTI	GATC	2 cut(s)	49, 179
BstMBI	GATC	2 cut(s)	46, 176
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 458
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	1 cut(s)	87
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	3 cut(s)	153, 156, 473
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	87, 265
BsuTUI	ATCGAT	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	128
BtsCI	GGATG	2 cut(s)	88, 188
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	308
CciI	TCATGA	1 cut(s)	24
Cfr13I	GGNCC	3 cut(s)	263, 264, 491
ClaI	ATCGAT	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	506
CviAII	CATG	4 cut(s)	25, 44, 101, 509
CviQI	GTAC	1 cut(s)	506
DdeI	CTNAG	3 cut(s)	448, 483, 525
DpnI	GATC	2 cut(s)	48, 178
DpnII	GATC	2 cut(s)	46, 176
EaeI	YGGCCR	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	491
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	4 cut(s)	28, 47, 104, 512
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	4 cut(s)	24, 43, 100, 508
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	142, 145, 462
FokI	GGATG	2 cut(s)	95, 195
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	3 cut(s)	142, 145, 462
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	3 cut(s)	142, 145, 462
HaeIII	GGCC	2 cut(s)	87, 265
HapII	CCGG	2 cut(s)	434, 494
Hin1II	CATG	4 cut(s)	28, 47, 104, 512
HinfI	GANTC	2 cut(s)	430, 521
HpaII	CCGG	2 cut(s)	434, 494
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	2 cut(s)	246, 506
Hpy188I	TCNGA	2 cut(s)	517, 526
Hpy188III	TCNNGA	2 cut(s)	25, 180
Hpy8I	GTNNAC	2 cut(s)	246, 506
HpyAV	CCTTC	4 cut(s)	24, 149, 407, 477
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	3 cut(s)	299, 306, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 458
HpyF3I	CTNAG	3 cut(s)	448, 483, 525
Hsp92II	CATG	4 cut(s)	28, 47, 104, 512
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	46, 176
LmnI	GCTCC	1 cut(s)	469
LpnPI	CCDG	9 cut(s)	74, 101, 106, 165, 292, 380, 447, 473, 507
Lsp1109I	GCAGC	3 cut(s)	153, 156, 473
LweI	GCATC	2 cut(s)	72, 172
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	185, 205
MalI	GATC	2 cut(s)	48, 178
MboI	GATC	2 cut(s)	46, 176
MboII	GAAGA	5 cut(s)	89, 232, 286, 301, 530
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	2 cut(s)	394, 442
MluNI	TGGCCA	1 cut(s)	87
MnlI	CCTC	8 cut(s)	21, 73, 167, 196, 210, 244, 254, 520
Mox20I	TGGCCA	1 cut(s)	87
MroXI	GAANNNNTTC	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	87
MspI	CCGG	2 cut(s)	434, 494
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	69, 458
NdeII	GATC	2 cut(s)	46, 176
NlaIII	CATG	4 cut(s)	28, 47, 104, 512
NlaIV	GGNNCC	3 cut(s)	265, 365, 492
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	512
PagI	TCATGA	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	430, 521
PkrI	GCNGC	3 cut(s)	143, 146, 463
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	265, 365, 492
PspOMI	GGGCCC	1 cut(s)	263
PspPI	GGNCC	3 cut(s)	263, 264, 491
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
SatI	GCNGC	3 cut(s)	142, 145, 462
Sau3AI	GATC	2 cut(s)	46, 176
Sau96I	GGNCC	3 cut(s)	263, 264, 491
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	2 cut(s)	72, 172
SinI	GGWCC	1 cut(s)	491
Sse9I	AATT	2 cut(s)	394, 442
SsiI	CCGC	2 cut(s)	310, 322
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	66, 470
TasI	AATT	2 cut(s)	394, 442
TatI	WGTACW	1 cut(s)	505
TfiI	GAWTC	2 cut(s)	430, 521
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	3 cut(s)	141, 144, 461
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	3 cut(s)	90, 168, 392
TspGWI	ACGGA	2 cut(s)	117, 263
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	491
XceI	RCATGY	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.