AT2G20120

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008495
Physical Location & Seq
Reverse (-)
8687330 .. 8690214
2885 bp
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UTR
Exon/CDS
Intron
AT2G20120.1

Sequence Viewer

Length: 807 bp
ATGGGAGACGAGAAGCCGGTGATTGTTATGGCCAATCGAGAAAGAGATCGAGAGCTTCTGATTCCCGTCGCTGATTCCGGCGACAAAGACGACGGTTCTTCTTCGAAGCCTTCTTCTTCTTCCTCTGCTTCTTCTTCTTCGCATCAATCCAGCCACGAGACTTTAAGCTTGTTCATTAGGGGCTGGGCGTCAAAGAAGTTCATGACAGGCTGTGTTATCCTACTTCCTATTGCAATTACTTTCTATATAACATGGTGGTTTATTCACTTTGTCGATGGATTCTTCTCTCCAATATATGCACAACTTGGAATCAACGTATTTGGTTTCGGTTTTTTGACTTCCATTGCATTCATCTTCTTGGTTGGGGTGTTCATGTCTTCGTGGTTGGGGGCATCGGTTCTGAACTTGGGAGAGTGGTTTATCAAGCGGATGCCGTTTGTTCGTCACATCTACAACGCCTCCAAGCAAATCAGCACTGCCATATCGCCTGATCAAAATACACAAGCTTTCAAGGAAGTTGCAATCATCAGGCATCCCCGTGTAGGTGAATACGCATTTGGCTTCATTACATCAACTGTTGTTCTCCAGAACTATCCAACCGAGGAGGAACTTTGCTGTGTATACGTTCCCACGAACCACCTTTACATTGGAGATCTACTACTTGTCAACAGTAATGACGTTATCAGGCCAAACCTCTCGGTCCGGGAAGGAATTGAGATTGTTGTTTCGGGTGGAATGTCAATGCCACAGATTCTGTCCACTGTTGATAAACCTTTGGCCTCGATTGATAGAGCTACAAGCTTATAG

Protein Analysis

268

Amino Acids

29.67

Weight (kDa)

5.86

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF502 PF04367 113 - 213 4.1e-28 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 621
AciI CCGC 1 cut(s) 427
AcoI YGGCCR 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 542
AgsI TTSAA 1 cut(s) 511
AjuI GAANNNNNNNTTGG 2 cut(s) 540, 572
AluBI AGCT 5 cut(s) 55, 168, 506, 794, 801
AluI AGCT 5 cut(s) 55, 168, 506, 794, 801
Alw26I GTCTC 1 cut(s) 152
AlwNI CAGNNNCTG 1 cut(s) 754
AoxI GGCC 3 cut(s) 30, 686, 777
AspS9I GGNCC 1 cut(s) 700
AsuC2I CCSGG 1 cut(s) 704
AsuHPI GGTGA 2 cut(s) 31, 557
AsuII TTCGAA 1 cut(s) 104
AvaII GGWCC 1 cut(s) 700
BalI TGGCCA 1 cut(s) 32
BauI CACGAG 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 369
BccI CCATC 1 cut(s) 269
BceAI ACGGC 1 cut(s) 418
BclI TGATCA 1 cut(s) 490
BcnI CCSGG 1 cut(s) 704
BcoDI GTCTC 1 cut(s) 152
BglII AGATCT 1 cut(s) 652
Bme1390I CCNGG 1 cut(s) 704
Bme18I GGWCC 1 cut(s) 700
BmgT120I GGNCC 1 cut(s) 700
BmrFI CCNGG 1 cut(s) 704
BmsI GCATC 4 cut(s) 151, 401, 420, 541
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 569
Bpu14I TTCGAA 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 704
BsaHI GRCGYC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 600
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 1 cut(s) 542
Bse118I RCCGGY 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 2 cut(s) 435, 532
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMI GCAATG 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 617
BseYI CCCAGC 1 cut(s) 183
BshFI GGCC 3 cut(s) 32, 688, 779
BsiSI CCGG 3 cut(s) 17, 78, 703
BslI CCNNNNNNNGG 1 cut(s) 542
BsmAI GTCTC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 3 cut(s) 32, 688, 779
Bsp119I TTCGAA 1 cut(s) 104
Bsp143I GATC 3 cut(s) 46, 490, 652
BspACI CCGC 1 cut(s) 427
BspANI GGCC 3 cut(s) 32, 688, 779
BspHI TCATGA 1 cut(s) 201
BspT104I TTCGAA 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 3 cut(s) 46, 490, 652
BssNAI GTATAC 1 cut(s) 622
BssNI GRCGYC 1 cut(s) 188
BssSI CACGAG 1 cut(s) 155
Bst1107I GTATAC 1 cut(s) 622
Bst2BI CACGAG 1 cut(s) 155
Bst4CI ACNGT 4 cut(s) 95, 577, 671, 763
BstACI GRCGYC 1 cut(s) 188
BstBI TTCGAA 1 cut(s) 104
BstF5I GGATG 2 cut(s) 435, 532
BstKTI GATC 3 cut(s) 49, 493, 655
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 3 cut(s) 46, 490, 652
BstSCI CCNGG 1 cut(s) 702
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 652
BstYI RGATCY 1 cut(s) 652
BstZ17I GTATAC 1 cut(s) 622
BsuRI GGCC 3 cut(s) 32, 688, 779
BtsCI GGATG 2 cut(s) 435, 532
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 2 cut(s) 474, 759
CaiI CAGNNNCTG 1 cut(s) 754
CciI TCATGA 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 700
CpoI CGGWCCG 1 cut(s) 700
CseI GACGC 1 cut(s) 177
CspI CGGWCCG 1 cut(s) 700
CviAII CATG 3 cut(s) 202, 252, 373
DpnI GATC 3 cut(s) 48, 492, 654
DpnII GATC 3 cut(s) 46, 490, 652
EaeI YGGCCR 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 700
FaeI CATG 3 cut(s) 205, 255, 376
FatI CATG 3 cut(s) 201, 251, 372
FbaI TGATCA 1 cut(s) 490
FblI GTMKAC 1 cut(s) 621
FokI GGATG 2 cut(s) 442, 519
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 569
HaeIII GGCC 3 cut(s) 32, 688, 779
HapII CCGG 3 cut(s) 17, 78, 703
HgaI GACGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 188
Hin1II CATG 3 cut(s) 205, 255, 376
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HindIII AAGCTT 3 cut(s) 166, 504, 799
HinfI GANTC 5 cut(s) 61, 74, 279, 309, 751
HpaII CCGG 3 cut(s) 17, 78, 703
HphI GGTGA 2 cut(s) 31, 557
Hpy166II GTNNAC 3 cut(s) 622, 667, 759
Hpy188I TCNGA 2 cut(s) 60, 402
Hpy188III TCNNGA 4 cut(s) 38, 50, 202, 586
Hpy8I GTNNAC 3 cut(s) 622, 667, 759
Hpy99I CGWCG 2 cut(s) 71, 95
HpyAV CCTTC 2 cut(s) 120, 701
HpyCH4III ACNGT 4 cut(s) 95, 577, 671, 763
HpyCH4IV ACGT 3 cut(s) 315, 624, 678
HpyCH4V TGCA 4 cut(s) 233, 299, 347, 521
HpySE526I ACGT 3 cut(s) 315, 624, 678
Hsp92I GRCGYC 1 cut(s) 188
Hsp92II CATG 3 cut(s) 205, 255, 376
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 3 cut(s) 46, 490, 652
LweI GCATC 4 cut(s) 151, 401, 420, 541
MaeII ACGT 3 cut(s) 315, 624, 678
MaeIII GTNAC 1 cut(s) 443
MalI GATC 3 cut(s) 48, 492, 654
MboI GATC 3 cut(s) 46, 490, 652
MflI RGATCY 1 cut(s) 652
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 2 cut(s) 234, 711
MluNI TGGCCA 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 620
MnlI CCTC 6 cut(s) 133, 469, 595, 598, 704, 790
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 537
Msp20I TGGCCA 1 cut(s) 32
MspI CCGG 3 cut(s) 17, 78, 703
MspR9I CCNGG 1 cut(s) 704
Mva1269I GAATGC 1 cut(s) 347
NciI CCSGG 1 cut(s) 704
NdeII GATC 3 cut(s) 46, 490, 652
NlaIII CATG 3 cut(s) 205, 255, 376
NmuCI GTSAC 1 cut(s) 443
NspV TTCGAA 1 cut(s) 104
PagI TCATGA 1 cut(s) 201
PctI GAATGC 1 cut(s) 347
PfeI GAWTC 5 cut(s) 61, 74, 279, 309, 751
PfoI TCCNGGA 1 cut(s) 702
PspFI CCCAGC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 700
PsrI GAACNNNNNNTAC 2 cut(s) 626, 658
PstNI CAGNNNCTG 1 cut(s) 754
PsuI RGATCY 1 cut(s) 652
RseI CAYNNNNRTG 1 cut(s) 537
Rsr2I CGGWCCG 1 cut(s) 700
RsrII CGGWCCG 1 cut(s) 700
SaqAI TTAA 1 cut(s) 164
Sau3AI GATC 3 cut(s) 46, 490, 652
Sau96I GGNCC 1 cut(s) 700
ScrFI CCNGG 1 cut(s) 704
SfaNI GCATC 4 cut(s) 151, 401, 420, 541
SfuI TTCGAA 1 cut(s) 104
SinI GGWCC 1 cut(s) 700
SmiMI CAYNNNNRTG 1 cut(s) 537
Sse9I AATT 2 cut(s) 234, 711
SsiI CCGC 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 702
TaaI ACNGT 4 cut(s) 95, 577, 671, 763
TaiI ACGT 3 cut(s) 318, 627, 681
TaqI TCGA 5 cut(s) 37, 49, 104, 273, 782
TaqII GACCGA 1 cut(s) 688
TasI AATT 2 cut(s) 234, 711
TfiI GAWTC 5 cut(s) 61, 74, 279, 309, 751
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 2 cut(s) 481, 766
TseFI GTSAC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 5 cut(s) 163, 190, 340, 361, 553
TspRI CASTG 2 cut(s) 481, 766
VpaK11BI GGWCC 1 cut(s) 700
XcmI CCANNNNNNNNNTGG 1 cut(s) 644
XmiI GTMKAC 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.