Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008495

Physical Location & Seq

Genomic Coordinates Forward (+)

2504926 .. 2507680

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03750.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGAAGTCGTCGTCTTCGATCGATGGCGAGCAGAGACAGGGAACCTAAGCGATCGATCGTGAGCTTCTCATTCCGGTGGCGGACTCCGGCGACGAAGATGCATCGTCGAAACCCTCCTCGTCTTCCTCCTCCTCCCACCACACCGGCCGCGAGTCGGACATTTTCCAAAGTTGTTAGAAGTTGGGCATCAAAAAAGTTCATGACAGGATGTGTGATCCTATTTCCAATAGCGATCACTTTCTATATCACGTGGTGGTTTATTCACTTTGTGGATGGTTTCTTCTCTCCAATCTACGCTCAACTTGGAATCGACATTTTTGGTCTTGGATTTGTAACTTCTATTACATTCATATTTCTCGTTGGGGTGTTCATGTCATCATGGTTGGGTGCATCTGTCCTCGGCCTTGGAGAGTGGTTTATCAAAAGAATGCCGTTTGTTCGTCATATCTATAATGCCTCCAAGCAGATTAGTTCTGCTATATCCCCAGATCAAAATACACAAGCTTTCAAGGAAGTGGCCATAATAAGGCATCCACGTATTGGTGAATATGCATTCGGGTTCATCACTTCATCCGTTGTCCTTCAGAGCTATTCTGGAGATGAAGAGTTGTGCTGTGTTTATGTTCCCACGAACCATCTTTACATTGGTGATGTGTTCCTAGTCAACACCAAGGATGTTATCAGACCAAATTTATCTGTACGGGAGGGAATTGAAATTGTTGTGTCTGGAGGCATGTCAATGCCCCAGATCCTGTCAACGCTCGATCCACGGATCATGCCAGTTGAAGCCGAGGGAAGGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0007389 GO:0008150 GO:0010051 GO:0010222 GO:0012505 GO:0016020 GO:0016021 GO:0031224 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

269

Amino Acids

30.45

Weight (kDa)

10.2

Isoelectric Point (pI)

64.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20120 AT2G20120 AT2G20130
fragaria_vesca	FvH4_1g04490 FvH4_1g04490 FvH4_1g04490
malus_domestica	MD02G1044400.v1.1 MD15G1182700.v1.1
prunus_persica	Prupe.7G232900_v2.0.a1
pyrus_communis	pycom02g03750 pycom15g16510
rosa_chinensis	RchiOBHm_Chr2g0090091
rosa_laevigata	RLG00000016084
rosa_multiflora	Rmu_sc0008968.1_g000005
rosa_roxburghii	Rroxscaffold_2G00151400
rosa_rugosa	Rorug02G0005200
rosa_samantha	Rh2AG051000 Rh2AG109500 Rh2BG049700 Rh2BG276200 Rh2CG051900 Rh2DG051200
rosa_wichuraiana	Rw2G004570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	542
AccII	CGCG	1 cut(s)	152
AciI	CCGC	2 cut(s)	82, 150
AclWI	GGATC	4 cut(s)	211, 745, 761, 782
AcoI	YGGCCR	2 cut(s)	147, 519
AcsI	RAATTY	1 cut(s)	691
AcuI	CTGAAG	1 cut(s)	569
AcvI	CACGTG	1 cut(s)	252
AdeI	CACNNNGTG	2 cut(s)	255, 271
AfaI	GTAC	1 cut(s)	702
AfiI	CCNNNNNNNGG	4 cut(s)	156, 528, 542, 798
AgsI	TTSAA	3 cut(s)	511, 716, 788
AluBI	AGCT	3 cut(s)	66, 506, 591
AluI	AGCT	3 cut(s)	66, 506, 591
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	4 cut(s)	211, 745, 761, 782
AlwNI	CAGNNNCTG	1 cut(s)	754
AoxI	GGCC	3 cut(s)	147, 403, 519
ApoI	RAATTY	1 cut(s)	691
AsuHPI	GGTGA	2 cut(s)	557, 662
BalI	TGGCCA	1 cut(s)	521
BbrPI	CACGTG	1 cut(s)	252
BbsI	GAAGAC	2 cut(s)	8, 116
BccI	CCATC	3 cut(s)	19, 269, 645
BceAI	ACGGC	1 cut(s)	418
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	662
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	45
BmsI	GCATC	5 cut(s)	90, 112, 197, 401, 541
BpiI	GAAGAC	2 cut(s)	8, 116
BpmI	CTGGAG	2 cut(s)	618, 750
Bpu10I	CCTNAGC	1 cut(s)	48
Bsa29I	ATCGAT	2 cut(s)	23, 56
BsaAI	YACGTR	2 cut(s)	252, 539
BsaJI	CCNNGG	5 cut(s)	400, 406, 672, 770, 792
BsaWI	WCCGGW	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	4 cut(s)	156, 528, 542, 798
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	782
BseCI	ATCGAT	2 cut(s)	23, 56
BseDI	CCNNGG	5 cut(s)	400, 406, 672, 770, 792
BseGI	GGATG	5 cut(s)	215, 280, 532, 572, 682
BseLI	CCNNNNNNNGG	4 cut(s)	156, 528, 542, 798
BseNI	ACTGG	1 cut(s)	782
BseRI	GAGGAG	3 cut(s)	108, 120, 123
BseX3I	CGGCCG	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	152
Bsh1285I	CGRYCG	4 cut(s)	23, 56, 60, 150
BshFI	GGCC	3 cut(s)	149, 405, 521
BshVI	ATCGAT	2 cut(s)	23, 56
BsiEI	CGRYCG	4 cut(s)	23, 56, 60, 150
BsiSI	CCGG	3 cut(s)	76, 89, 146
BslI	CCNNNNNNNGG	4 cut(s)	156, 528, 542, 798
BsmAI	GTCTC	1 cut(s)	30
BsmI	GAATGC	2 cut(s)	435, 554
BsnI	GGCC	3 cut(s)	149, 405, 521
Bsp143I	GATC	9 cut(s)	20, 53, 57, 216, 234, 490, 750, 766, 774
BspACI	CCGC	2 cut(s)	82, 150
BspANI	GGCC	3 cut(s)	149, 405, 521
BspDI	ATCGAT	2 cut(s)	23, 56
BspFNI	CGCG	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	4 cut(s)	211, 745, 761, 782
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	782
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	5 cut(s)	400, 406, 672, 770, 792
BssMI	GATC	9 cut(s)	20, 53, 57, 216, 234, 490, 750, 766, 774
BssT1I	CCWWGG	2 cut(s)	406, 672
Bst6I	CTCTTC	1 cut(s)	600
BstBAI	YACGTR	2 cut(s)	252, 539
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	48
BstDSI	CCRYGG	1 cut(s)	770
BstF5I	GGATG	5 cut(s)	215, 280, 532, 572, 682
BstFNI	CGCG	1 cut(s)	152
BstKTI	GATC	9 cut(s)	23, 56, 60, 219, 237, 493, 753, 769, 777
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	9 cut(s)	20, 53, 57, 216, 234, 490, 750, 766, 774
BstMCI	CGRYCG	4 cut(s)	23, 56, 60, 150
BstNSI	RCATGY	1 cut(s)	739
BstUI	CGCG	1 cut(s)	152
BstV2I	GAAGAC	2 cut(s)	8, 116
BstX2I	RGATCY	1 cut(s)	750
BstYI	RGATCY	1 cut(s)	750
BstZI	CGGCCG	1 cut(s)	147
Bsu15I	ATCGAT	2 cut(s)	23, 56
BsuRI	GGCC	3 cut(s)	149, 405, 521
BsuTUI	ATCGAT	2 cut(s)	23, 56
BtgI	CCRYGG	1 cut(s)	770
BtsCI	GGATG	5 cut(s)	215, 280, 532, 572, 682
Cac8I	GCNNGC	1 cut(s)	31
CaiI	CAGNNNCTG	1 cut(s)	754
CciI	TCATGA	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	145
ClaI	ATCGAT	2 cut(s)	23, 56
Csp6I	GTAC	1 cut(s)	701
CviAII	CATG	5 cut(s)	202, 373, 381, 736, 778
CviJI	RGCY	7 cut(s)	66, 149, 405, 506, 521, 591, 791
CviKI_1	RGCY	7 cut(s)	66, 149, 405, 506, 521, 591, 791
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	9 cut(s)	22, 55, 59, 218, 236, 492, 752, 768, 776
DpnII	GATC	9 cut(s)	20, 53, 57, 216, 234, 490, 750, 766, 774
DraIII	CACNNNGTG	2 cut(s)	255, 271
EaeI	YGGCCR	2 cut(s)	147, 519
EagI	CGGCCG	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
EciI	GGCGGA	1 cut(s)	97
EclXI	CGGCCG	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	406, 672
Eco52I	CGGCCG	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	569
Eco72I	CACGTG	1 cut(s)	252
EcoT14I	CCWWGG	2 cut(s)	406, 672
EcoT22I	ATGCAT	2 cut(s)	105, 556
ErhI	CCWWGG	2 cut(s)	406, 672
FaeI	CATG	5 cut(s)	205, 376, 384, 739, 781
FatI	CATG	5 cut(s)	201, 372, 380, 735, 777
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	5 cut(s)	222, 287, 519, 559, 689
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	662
GluI	GCNGC	1 cut(s)	150
GsuI	CTGGAG	2 cut(s)	618, 750
HaeIII	GGCC	3 cut(s)	149, 405, 521
HapII	CCGG	3 cut(s)	76, 89, 146
Hin1II	CATG	5 cut(s)	205, 376, 384, 739, 781
HincII	GTYRAC	2 cut(s)	667, 759
HindII	GTYRAC	2 cut(s)	667, 759
HindIII	AAGCTT	1 cut(s)	504
HinfI	GANTC	3 cut(s)	85, 154, 309
HpaII	CCGG	3 cut(s)	76, 89, 146
HphI	GGTGA	2 cut(s)	557, 662
Hpy166II	GTNNAC	2 cut(s)	667, 759
Hpy188I	TCNGA	3 cut(s)	159, 588, 686
Hpy188III	TCNNGA	4 cut(s)	61, 202, 597, 729
Hpy8I	GTNNAC	2 cut(s)	667, 759
Hpy99I	CGWCG	3 cut(s)	15, 97, 111
HpyAV	CCTTC	2 cut(s)	593, 792
HpyCH4IV	ACGT	2 cut(s)	251, 538
HpyCH4V	TGCA	3 cut(s)	103, 392, 554
HpyF3I	CTNAG	1 cut(s)	48
HpySE526I	ACGT	2 cut(s)	251, 538
Hsp92II	CATG	5 cut(s)	205, 376, 384, 739, 781
Kzo9I	GATC	9 cut(s)	20, 53, 57, 216, 234, 490, 750, 766, 774
LweI	GCATC	5 cut(s)	90, 112, 197, 401, 541
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	2 cut(s)	251, 538
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	9 cut(s)	22, 55, 59, 218, 236, 492, 752, 768, 776
MboI	GATC	9 cut(s)	20, 53, 57, 216, 234, 490, 750, 766, 774
MboII	GAAGA	5 cut(s)	8, 109, 116, 274, 617
MflI	RGATCY	1 cut(s)	750
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	3 cut(s)	691, 711, 717
MluNI	TGGCCA	1 cut(s)	521
MlyI	GAGTC	2 cut(s)	79, 163
MmeI	TCCRAC	1 cut(s)	137
Mox20I	TGGCCA	1 cut(s)	521
Mph1103I	ATGCAT	2 cut(s)	105, 556
MscI	TGGCCA	1 cut(s)	521
MslI	CAYNNNNRTG	2 cut(s)	76, 740
Msp20I	TGGCCA	1 cut(s)	521
MspI	CCGG	3 cut(s)	76, 89, 146
Mva1269I	GAATGC	2 cut(s)	435, 554
MvnI	CGCG	1 cut(s)	152
NdeII	GATC	9 cut(s)	20, 53, 57, 216, 234, 490, 750, 766, 774
NlaIII	CATG	5 cut(s)	205, 376, 384, 739, 781
NlaIV	GGNNCC	1 cut(s)	45
NmeAIII	GCCGAG	1 cut(s)	381
NsiI	ATGCAT	2 cut(s)	105, 556
NspI	RCATGY	1 cut(s)	739
PagI	TCATGA	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	16
PctI	GAATGC	2 cut(s)	435, 554
PfeI	GAWTC	1 cut(s)	309
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	1 cut(s)	151
Ple19I	CGATCG	3 cut(s)	23, 56, 60
PleI	GAGTC	2 cut(s)	79, 162
PmaCI	CACGTG	1 cut(s)	252
PmlI	CACGTG	1 cut(s)	252
PpsI	GAGTC	2 cut(s)	79, 162
Ppu21I	YACGTR	2 cut(s)	252, 539
PspCI	CACGTG	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	45
PsrI	GAACNNNNNNTAC	2 cut(s)	626, 658
PstNI	CAGNNNCTG	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	750
PvuI	CGATCG	3 cut(s)	23, 56, 60
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
RseI	CAYNNNNRTG	2 cut(s)	76, 740
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	9 cut(s)	20, 53, 57, 216, 234, 490, 750, 766, 774
SchI	GAGTC	2 cut(s)	79, 163
SetI	ASST	6 cut(s)	49, 68, 254, 508, 541, 593
SfaNI	GCATC	5 cut(s)	90, 112, 197, 401, 541
SmiMI	CAYNNNNRTG	2 cut(s)	76, 740
Sse9I	AATT	3 cut(s)	691, 711, 717
SsiI	CCGC	2 cut(s)	82, 150
SspMI	CTAG	1 cut(s)	662
StyI	CCWWGG	2 cut(s)	406, 672
TaiI	ACGT	2 cut(s)	254, 541
TaqI	TCGA	6 cut(s)	19, 23, 56, 109, 312, 765
TasI	AATT	3 cut(s)	691, 711, 717
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	309
TspDTI	ATGAA	6 cut(s)	190, 340, 361, 553, 561, 618
TspGWI	ACGGA	2 cut(s)	565, 787
Van91I	CCANNNNNTGG	1 cut(s)	542
XapI	RAATTY	1 cut(s)	691
XceI	RCATGY	1 cut(s)	739
XcmI	CCANNNNNNNNNTGG	1 cut(s)	644
XspI	CTAG	1 cut(s)	662
Zsp2I	ATGCAT	2 cut(s)	105, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.