Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008495

Physical Location & Seq

Genomic Coordinates Forward (+)

14474965 .. 14478910

Gene Structure 3946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1182700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGGCGATGAGAAGTCGTCGTCATCGATTGTAATGGCGAGCAGAGACAGAGAACCGCGAGATCGCGAGCTTCTCATTCCCGTGGCGGACTCCGGCGACGAGGATGCATCGTCCAAACCCTCCTCTTCGTCCTCCTCCTCCCACCACACCGGCCGCGAGACGTTTTCCAAAGTTGTTAGAAGTTGGGCATCAAAAAAGTTCATGACAGGATGTGTGATCCTATTTCCAATAGCGATCACTTTCTATATCACATGGTGGTTCATTCACTTTGTGGATGGCTTCTTCTCTCCAATCTATGCTCAACTTGGAATCAACATTTTTGGTCTTGGATTTGTAACTTCCATAACATTCATATTTCTCGTTGGGGTGTTCATGTCATCATGGTTGGGTGCATCTGTCCTGGGCCTTGGTGAGTGGTTTATCAAAAGAATGCCGTTTGTTCGTCATATCTACAATGCCTCCAAGCAGATTAGTTCTGCCATATCCCCGGATCAAAACACACAAGCTTTCAAGGAAGTGGCTATAATAAGGCATCCACGTATTGGTGAATATGCATTCGGGTTCATCACTTCATCCGTTGTCCTACAGAGTTATTCTGGAGATGAGGAGTTGTGCTGTGTTTATGTTCCCACGAACCATCTTTACATTGGTGATGTATTCCTGGTCAACACCAAGGATGTTATCAGACCAAATTTATCCGTACGGGAGGGAATTGAAATCGTTGTGTCTGGAGGCATGTCAATGCCCCAGATCCTGTCAACGCTTGATTCGCGGATCGTGCCACTGGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0007389 GO:0008150 GO:0010051 GO:0010222 GO:0012505 GO:0016020 GO:0016021 GO:0031224 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

265

Amino Acids

29.39

Weight (kDa)

6.3

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF502	PF04367	113 - 213	3.1e-27	Protein of unknown function (DUF502)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20120 AT2G20120 AT2G20130
fragaria_vesca	FvH4_1g04490 FvH4_1g04490 FvH4_1g04490
malus_domestica	MD02G1044400.v1.1 MD15G1182700.v1.1
prunus_persica	Prupe.7G232900_v2.0.a1
pyrus_communis	pycom02g03750 pycom15g16510
rosa_chinensis	RchiOBHm_Chr2g0090091
rosa_laevigata	RLG00000016084
rosa_multiflora	Rmu_sc0008968.1_g000005
rosa_roxburghii	Rroxscaffold_2G00151400
rosa_rugosa	Rorug02G0005200
rosa_samantha	Rh2AG051000 Rh2AG109500 Rh2BG049700 Rh2BG276200 Rh2CG051900 Rh2DG051200
rosa_wichuraiana	Rw2G004570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	542
AccII	CGCG	4 cut(s)	58, 66, 156, 772
AciI	CCGC	4 cut(s)	56, 86, 154, 772
AclWI	GGATC	4 cut(s)	211, 498, 745, 782
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	691
AdeI	CACNNNGTG	2 cut(s)	255, 271
AfaI	GTAC	1 cut(s)	702
AfiI	CCNNNNNNNGG	1 cut(s)	542
AgsI	TTSAA	2 cut(s)	511, 716
AjnI	CCWGG	2 cut(s)	399, 660
AluBI	AGCT	2 cut(s)	70, 506
AluI	AGCT	2 cut(s)	70, 506
Alw26I	GTCTC	2 cut(s)	39, 152
AlwI	GGATC	4 cut(s)	211, 498, 745, 782
AlwNI	CAGNNNCTG	1 cut(s)	754
AoxI	GGCC	2 cut(s)	151, 403
ApoI	RAATTY	1 cut(s)	691
AspS9I	GGNCC	1 cut(s)	403
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	3 cut(s)	422, 557, 662
BccI	CCATC	2 cut(s)	269, 645
BceAI	ACGGC	1 cut(s)	418
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	2 cut(s)	401, 662
BcnI	CCSGG	1 cut(s)	488
BcoDI	GTCTC	2 cut(s)	39, 152
BfmI	CTRYAG	1 cut(s)	584
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
Bme1390I	CCNGG	3 cut(s)	401, 488, 662
BmgT120I	GGNCC	1 cut(s)	403
BmrFI	CCNGG	3 cut(s)	401, 488, 662
BmsI	GCATC	5 cut(s)	94, 116, 197, 401, 541
BpmI	CTGGAG	2 cut(s)	618, 750
BpuMI	CCSGG	1 cut(s)	488
Bsa29I	ATCGAT	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	539
BsaJI	CCNNGG	5 cut(s)	81, 400, 406, 486, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	789
BseBI	CCWGG	2 cut(s)	401, 662
BseCI	ATCGAT	1 cut(s)	26
BseDI	CCNNGG	5 cut(s)	81, 400, 406, 486, 672
BseGI	GGATG	6 cut(s)	109, 215, 280, 532, 572, 682
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseNI	ACTGG	1 cut(s)	789
BseRI	GAGGAG	4 cut(s)	112, 124, 127, 620
BseX3I	CGGCCG	1 cut(s)	151
Bsh1236I	CGCG	4 cut(s)	58, 66, 156, 772
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	153, 405
BshVI	ATCGAT	1 cut(s)	26
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	3 cut(s)	93, 150, 488
BsiWI	CGTACG	1 cut(s)	700
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmAI	GTCTC	2 cut(s)	39, 152
BsmBI	CGTCTC	1 cut(s)	152
BsmI	GAATGC	2 cut(s)	435, 554
BsnI	GGCC	2 cut(s)	153, 405
Bsp143I	GATC	6 cut(s)	61, 216, 234, 490, 750, 774
Bsp68I	TCGCGA	1 cut(s)	66
BspACI	CCGC	4 cut(s)	56, 86, 154, 772
BspANI	GGCC	2 cut(s)	153, 405
BspDI	ATCGAT	1 cut(s)	26
BspFNI	CGCG	4 cut(s)	58, 66, 156, 772
BspHI	TCATGA	1 cut(s)	201
BspPI	GGATC	4 cut(s)	211, 498, 745, 782
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	789
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	5 cut(s)	81, 400, 406, 486, 672
BssMI	GATC	6 cut(s)	61, 216, 234, 490, 750, 774
BssT1I	CCWWGG	2 cut(s)	406, 672
Bst2UI	CCWGG	2 cut(s)	401, 662
Bst6I	CTCTTC	1 cut(s)	130
BstBAI	YACGTR	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	40, 68
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	6 cut(s)	109, 215, 280, 532, 572, 682
BstFNI	CGCG	4 cut(s)	58, 66, 156, 772
BstKTI	GATC	6 cut(s)	64, 219, 237, 493, 753, 777
BstMAI	GTCTC	2 cut(s)	39, 152
BstMBI	GATC	6 cut(s)	61, 216, 234, 490, 750, 774
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	769, 778
BstNI	CCWGG	2 cut(s)	401, 662
BstNSI	RCATGY	1 cut(s)	739
BstSCI	CCNGG	3 cut(s)	399, 486, 660
BstSFI	CTRYAG	1 cut(s)	584
BstUI	CGCG	4 cut(s)	58, 66, 156, 772
BstX2I	RGATCY	1 cut(s)	750
BstYI	RGATCY	1 cut(s)	750
BstZI	CGGCCG	1 cut(s)	151
Bsu15I	ATCGAT	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	153, 405
BsuTUI	ATCGAT	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	6 cut(s)	109, 215, 280, 532, 572, 682
BtsIMutI	CAGTG	1 cut(s)	782
BtuMI	TCGCGA	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	40, 68
CaiI	CAGNNNCTG	1 cut(s)	754
CciI	TCATGA	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	403
ClaI	ATCGAT	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	701
CviAII	CATG	5 cut(s)	202, 252, 373, 381, 736
CviJI	RGCY	6 cut(s)	70, 153, 279, 405, 506, 521
CviKI_1	RGCY	6 cut(s)	70, 153, 279, 405, 506, 521
CviQI	GTAC	1 cut(s)	701
DpnI	GATC	6 cut(s)	63, 218, 236, 492, 752, 776
DpnII	GATC	6 cut(s)	61, 216, 234, 490, 750, 774
DraIII	CACNNNGTG	2 cut(s)	255, 271
EaeI	YGGCCR	1 cut(s)	151
EagI	CGGCCG	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	101
EclXI	CGGCCG	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	406, 672
Eco52I	CGGCCG	1 cut(s)	151
EcoRII	CCWGG	2 cut(s)	399, 660
EcoT14I	CCWWGG	2 cut(s)	406, 672
EcoT22I	ATGCAT	2 cut(s)	109, 556
ErhI	CCWWGG	2 cut(s)	406, 672
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	5 cut(s)	205, 255, 376, 384, 739
FatI	CATG	5 cut(s)	201, 251, 372, 380, 735
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	6 cut(s)	116, 222, 287, 519, 559, 689
Fsp4HI	GCNGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	154
GsuI	CTGGAG	2 cut(s)	618, 750
HaeIII	GGCC	2 cut(s)	153, 405
HapII	CCGG	3 cut(s)	93, 150, 488
Hin1II	CATG	5 cut(s)	205, 255, 376, 384, 739
HincII	GTYRAC	2 cut(s)	667, 759
HindII	GTYRAC	2 cut(s)	667, 759
HindIII	AAGCTT	1 cut(s)	504
HinfI	GANTC	3 cut(s)	89, 309, 767
HpaII	CCGG	3 cut(s)	93, 150, 488
HphI	GGTGA	3 cut(s)	422, 557, 662
Hpy166II	GTNNAC	2 cut(s)	667, 759
Hpy188I	TCNGA	1 cut(s)	686
Hpy188III	TCNNGA	4 cut(s)	65, 202, 597, 729
Hpy8I	GTNNAC	2 cut(s)	667, 759
Hpy99I	CGWCG	2 cut(s)	22, 101
HpyCH4IV	ACGT	2 cut(s)	161, 538
HpyCH4V	TGCA	3 cut(s)	107, 392, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	769, 778
HpySE526I	ACGT	2 cut(s)	161, 538
Hsp92II	CATG	5 cut(s)	205, 255, 376, 384, 739
Kzo9I	GATC	6 cut(s)	61, 216, 234, 490, 750, 774
LweI	GCATC	5 cut(s)	94, 116, 197, 401, 541
MaeII	ACGT	2 cut(s)	161, 538
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	6 cut(s)	63, 218, 236, 492, 752, 776
MboI	GATC	6 cut(s)	61, 216, 234, 490, 750, 774
MboII	GAAGA	2 cut(s)	117, 274
MflI	RGATCY	1 cut(s)	750
MluCI	AATT	2 cut(s)	691, 711
MlyI	GAGTC	1 cut(s)	83
Mph1103I	ATGCAT	2 cut(s)	109, 556
MslI	CAYNNNNRTG	2 cut(s)	80, 740
MspI	CCGG	3 cut(s)	93, 150, 488
MspR9I	CCNGG	3 cut(s)	401, 488, 662
Mva1269I	GAATGC	2 cut(s)	435, 554
MvaI	CCWGG	2 cut(s)	401, 662
MvnI	CGCG	4 cut(s)	58, 66, 156, 772
MwoI	GCNNNNNNNGC	2 cut(s)	769, 778
NciI	CCSGG	1 cut(s)	488
NdeII	GATC	6 cut(s)	61, 216, 234, 490, 750, 774
NlaIII	CATG	5 cut(s)	205, 255, 376, 384, 739
NruI	TCGCGA	1 cut(s)	66
NsiI	ATGCAT	2 cut(s)	109, 556
NspI	RCATGY	1 cut(s)	739
PagI	TCATGA	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PctI	GAATGC	2 cut(s)	435, 554
PfeI	GAWTC	2 cut(s)	309, 767
Pfl23II	CGTACG	1 cut(s)	700
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	1 cut(s)	155
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Ppu21I	YACGTR	1 cut(s)	539
Psp6I	CCWGG	2 cut(s)	399, 660
PspGI	CCWGG	2 cut(s)	399, 660
PspLI	CGTACG	1 cut(s)	700
PspPI	GGNCC	1 cut(s)	403
PsrI	GAACNNNNNNTAC	2 cut(s)	626, 658
PstNI	CAGNNNCTG	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	750
RruI	TCGCGA	1 cut(s)	66
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
RseI	CAYNNNNRTG	2 cut(s)	80, 740
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	6 cut(s)	61, 216, 234, 490, 750, 774
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	3 cut(s)	401, 488, 662
SetI	ASST	4 cut(s)	72, 164, 508, 541
SfaNI	GCATC	5 cut(s)	94, 116, 197, 401, 541
SfcI	CTRYAG	1 cut(s)	584
SmiMI	CAYNNNNRTG	2 cut(s)	80, 740
Sse9I	AATT	2 cut(s)	691, 711
SsiI	CCGC	4 cut(s)	56, 86, 154, 772
StyD4I	CCNGG	3 cut(s)	399, 486, 660
StyI	CCWWGG	2 cut(s)	406, 672
TaiI	ACGT	2 cut(s)	164, 541
TaqI	TCGA	1 cut(s)	26
TasI	AATT	2 cut(s)	691, 711
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	309, 767
TscAI	CASTG	1 cut(s)	789
TspDTI	ATGAA	6 cut(s)	190, 250, 340, 361, 553, 561
TspGWI	ACGGA	2 cut(s)	565, 688
TspRI	CASTG	1 cut(s)	789
Van91I	CCANNNNNTGG	1 cut(s)	542
XapI	RAATTY	1 cut(s)	691
XceI	RCATGY	1 cut(s)	739
XcmI	CCANNNNNNNNNTGG	1 cut(s)	644
Zsp2I	ATGCAT	2 cut(s)	109, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.