Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008495

Physical Location & Seq

Genomic Coordinates Forward (+)

2381498 .. 2385664

Gene Structure 4167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g04490.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGGCGATGAGAAGTCGTCGTCAATTGTAATGGCAAACAGAGACAGAGAGCCGCGAGATCGAGAGCTTCTCATTCCGGTCGCCGACTCCGGCGATGAAGACCTTTCTTCCAAGCCCTCGTCTTCTTCGTCTTCCTCTCACCACCTCACTGGCCGCGAGACTTTCTACAAAGTTTTCAGAAGTTGGGCGTCAAAGAAGTTCATGACTGGATGTGTGATCCTATTTCCAATAGCAATCACTTTCTACATAACTTGGTGGTTTATTCACTTTGTGGATGGCTTCTTCTCTCCAATATATGCTCAGCTAGGAATCAATATTTTCGGTCTTGGATTTGTAACTTCCATTACATTCATATTTTTGGTTGGGGTGTTCATGTCATCATGGCTGGGTGCATCTGTCCTGGGTCTTGGTGAGTGGTTTATCAAAAGAATGCCATTCGTTCGCCATATCTACAACGCCTCCAAGCAGATCAGTTCTGCCATATCCCCGGATCAAAACACGCAAGCCTTCAAGGAAGTGGCCATCATAAGGCATCCACGTATTGGAGAATATGCATTTGGGTTCATTACTTCATCACTTACTCTTCAGAACTATGAGGGGGATGAGGAATTGTGCTGTGTTTATGTTCCCACGAACCATCTGTATATTGGTGATATCTTTCTGGTCAGCACCAAGGATGTGATCAGGCCAAACCTATCTGTACGGGAAGGAATTGAAATTGTTGTATCTGGAGGCATGTCGATGCCTCAGATCCTGTCAACAGTTGATTCCCGGATTATGCCTGTGGTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0007389 GO:0008150 GO:0010051 GO:0010222 GO:0012505 GO:0016020 GO:0016021 GO:0031224 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

265

Amino Acids

29.58

Weight (kDa)

6.07

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF502	PF04367	113 - 213	3.3e-27	Protein of unknown function (DUF502)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20120 AT2G20120 AT2G20130
fragaria_vesca	FvH4_1g04490 FvH4_1g04490 FvH4_1g04490
malus_domestica	MD02G1044400.v1.1 MD15G1182700.v1.1
prunus_persica	Prupe.7G232900_v2.0.a1
pyrus_communis	pycom02g03750 pycom15g16510
rosa_chinensis	RchiOBHm_Chr2g0090091
rosa_laevigata	RLG00000016084
rosa_multiflora	Rmu_sc0008968.1_g000005
rosa_roxburghii	Rroxscaffold_2G00151400
rosa_rugosa	Rorug02G0005200
rosa_samantha	Rh2AG051000 Rh2AG109500 Rh2BG049700 Rh2BG276200 Rh2CG051900 Rh2DG051200
rosa_wichuraiana	Rw2G004570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	542
AccII	CGCG	2 cut(s)	55, 156
AciI	CCGC	2 cut(s)	53, 154
AclWI	GGATC	3 cut(s)	211, 498, 745
AcoI	YGGCCR	2 cut(s)	151, 519
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	271
AfaI	GTAC	1 cut(s)	702
AfiI	CCNNNNNNNGG	2 cut(s)	528, 542
AgsI	TTSAA	2 cut(s)	511, 716
AjnI	CCWGG	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AluBI	AGCT	3 cut(s)	67, 304, 792
AluI	AGCT	3 cut(s)	67, 304, 792
Alw26I	GTCTC	2 cut(s)	36, 152
AlwI	GGATC	3 cut(s)	211, 498, 745
AlwNI	CAGNNNCTG	1 cut(s)	754
AoxI	GGCC	3 cut(s)	151, 519, 686
AsuC2I	CCSGG	2 cut(s)	488, 772
AsuHPI	GGTGA	3 cut(s)	131, 422, 662
BalI	TGGCCA	1 cut(s)	521
BbsI	GAAGAC	3 cut(s)	105, 114, 123
BccI	CCATC	3 cut(s)	269, 530, 645
BciT130I	CCWGG	1 cut(s)	401
BclI	TGATCA	1 cut(s)	681
BcnI	CCSGG	2 cut(s)	488, 772
BcoDI	GTCTC	2 cut(s)	36, 152
BfaI	CTAG	1 cut(s)	305
BisI	GCNGC	2 cut(s)	53, 154
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	2 cut(s)	54, 155
Bme1390I	CCNGG	3 cut(s)	401, 488, 772
BmrFI	CCNGG	3 cut(s)	401, 488, 772
BmsI	GCATC	3 cut(s)	401, 541, 732
BpiI	GAAGAC	3 cut(s)	105, 114, 123
BplI	GAGNNNNNCTC	2 cut(s)	54, 86
BpmI	CTGGAG	1 cut(s)	750
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuMI	CCSGG	2 cut(s)	488, 772
BsaAI	YACGTR	1 cut(s)	539
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	400, 486, 672
BsaWI	WCCGGW	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	528, 542
Bse1I	ACTGG	2 cut(s)	154, 211
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	3 cut(s)	400, 486, 672
BseGI	GGATG	5 cut(s)	215, 280, 532, 607, 682
BseLI	CCNNNNNNNGG	2 cut(s)	528, 542
BseMII	CTCAG	2 cut(s)	314, 761
BseNI	ACTGG	2 cut(s)	154, 211
BseYI	CCCAGC	1 cut(s)	385
Bsh1236I	CGCG	2 cut(s)	55, 156
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	153, 521, 688
BsiEI	CGRYCG	1 cut(s)	81
BsiSI	CCGG	4 cut(s)	77, 90, 488, 772
BslI	CCNNNNNNNGG	2 cut(s)	528, 542
BsmAI	GTCTC	2 cut(s)	36, 152
BsmI	GAATGC	1 cut(s)	435
BsnI	GGCC	3 cut(s)	153, 521, 688
Bsp143I	GATC	6 cut(s)	58, 216, 468, 490, 681, 750
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	2 cut(s)	53, 154
BspANI	GGCC	3 cut(s)	153, 521, 688
BspCNI	CTCAG	2 cut(s)	313, 760
BspFNI	CGCG	2 cut(s)	55, 156
BspHI	TCATGA	1 cut(s)	201
BspPI	GGATC	3 cut(s)	211, 498, 745
BsrI	ACTGG	2 cut(s)	154, 211
BssECI	CCNNGG	3 cut(s)	400, 486, 672
BssMI	GATC	6 cut(s)	58, 216, 468, 490, 681, 750
BssNI	GRCGYC	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	672
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	763
Bst6I	CTCTTC	1 cut(s)	588
BstACI	GRCGYC	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	2 cut(s)	300, 747
BstF5I	GGATG	5 cut(s)	215, 280, 532, 607, 682
BstFNI	CGCG	2 cut(s)	55, 156
BstKTI	GATC	6 cut(s)	61, 219, 471, 493, 684, 753
BstMAI	GTCTC	2 cut(s)	36, 152
BstMBI	GATC	6 cut(s)	58, 216, 468, 490, 681, 750
BstMCI	CGRYCG	1 cut(s)	81
BstNI	CCWGG	1 cut(s)	401
BstNSI	RCATGY	1 cut(s)	739
BstSCI	CCNGG	3 cut(s)	399, 486, 770
BstUI	CGCG	2 cut(s)	55, 156
BstV2I	GAAGAC	3 cut(s)	105, 114, 123
BstX2I	RGATCY	1 cut(s)	750
BstXI	CCANNNNNNTGG	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	750
BsuRI	GGCC	3 cut(s)	153, 521, 688
BtgZI	GCGATG	2 cut(s)	21, 108
BtsCI	GGATG	5 cut(s)	215, 280, 532, 607, 682
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	504
CaiI	CAGNNNCTG	1 cut(s)	754
CciI	TCATGA	1 cut(s)	201
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	701
CviAII	CATG	4 cut(s)	202, 373, 381, 736
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	2 cut(s)	300, 747
DpnI	GATC	6 cut(s)	60, 218, 470, 492, 683, 752
DpnII	GATC	6 cut(s)	58, 216, 468, 490, 681, 750
DraIII	CACNNNGTG	1 cut(s)	271
EaeI	YGGCCR	2 cut(s)	151, 519
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco130I	CCWWGG	1 cut(s)	672
Eco32I	GATATC	1 cut(s)	655
Eco57I	CTGAAG	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	399
EcoRV	GATATC	1 cut(s)	655
EcoT14I	CCWWGG	1 cut(s)	672
EcoT22I	ATGCAT	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	672
FaeI	CATG	4 cut(s)	205, 376, 384, 739
FatI	CATG	4 cut(s)	201, 372, 380, 735
FbaI	TGATCA	1 cut(s)	681
Fnu4HI	GCNGC	2 cut(s)	53, 154
FokI	GGATG	5 cut(s)	222, 287, 519, 614, 689
Fsp4HI	GCNGC	2 cut(s)	53, 154
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	2 cut(s)	53, 154
GsaI	CCCAGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	3 cut(s)	153, 521, 688
HapII	CCGG	4 cut(s)	77, 90, 488, 772
HgaI	GACGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	4 cut(s)	205, 376, 384, 739
HincII	GTYRAC	1 cut(s)	759
HindII	GTYRAC	1 cut(s)	759
HinfI	GANTC	3 cut(s)	86, 309, 767
HpaII	CCGG	4 cut(s)	77, 90, 488, 772
HphI	GGTGA	3 cut(s)	131, 422, 662
Hpy166II	GTNNAC	1 cut(s)	759
Hpy188I	TCNGA	3 cut(s)	179, 588, 750
Hpy188III	TCNNGA	3 cut(s)	62, 202, 729
Hpy8I	GTNNAC	1 cut(s)	759
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	517, 701
HpyCH4III	ACNGT	1 cut(s)	763
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	2 cut(s)	392, 554
HpyF3I	CTNAG	2 cut(s)	300, 747
HpySE526I	ACGT	1 cut(s)	538
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	4 cut(s)	205, 376, 384, 739
Ksp22I	TGATCA	1 cut(s)	681
Kzo9I	GATC	6 cut(s)	58, 216, 468, 490, 681, 750
LweI	GCATC	3 cut(s)	401, 541, 732
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	6 cut(s)	60, 218, 470, 492, 683, 752
MboI	GATC	6 cut(s)	58, 216, 468, 490, 681, 750
MboII	GAAGA	7 cut(s)	99, 110, 114, 117, 123, 274, 575
MfeI	CAATTG	1 cut(s)	24
MflI	RGATCY	1 cut(s)	750
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	4 cut(s)	24, 608, 711, 717
MluNI	TGGCCA	1 cut(s)	521
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	8 cut(s)	127, 145, 155, 469, 589, 598, 725, 756
Mox20I	TGGCCA	1 cut(s)	521
Mph1103I	ATGCAT	1 cut(s)	556
MscI	TGGCCA	1 cut(s)	521
MslI	CAYNNNNRTG	1 cut(s)	740
Msp20I	TGGCCA	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	792
MspI	CCGG	4 cut(s)	77, 90, 488, 772
MspR9I	CCNGG	3 cut(s)	401, 488, 772
MunI	CAATTG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	401
MvnI	CGCG	2 cut(s)	55, 156
NciI	CCSGG	2 cut(s)	488, 772
NdeII	GATC	6 cut(s)	58, 216, 468, 490, 681, 750
NlaIII	CATG	4 cut(s)	205, 376, 384, 739
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	1 cut(s)	739
PagI	TCATGA	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PctI	GAATGC	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	309, 767
PflMI	CCANNNNNTGG	1 cut(s)	542
PfoI	TCCNGGA	1 cut(s)	770
PkrI	GCNGC	2 cut(s)	54, 155
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	399
PspFI	CCCAGC	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	399
PstNI	CAGNNNCTG	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	750
PvuII	CAGCTG	1 cut(s)	792
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
RseI	CAYNNNNRTG	1 cut(s)	740
SatI	GCNGC	2 cut(s)	53, 154
Sau3AI	GATC	6 cut(s)	58, 216, 468, 490, 681, 750
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	3 cut(s)	401, 488, 772
SetI	ASST	7 cut(s)	69, 105, 147, 306, 541, 696, 794
SfaNI	GCATC	3 cut(s)	401, 541, 732
SmiMI	CAYNNNNRTG	1 cut(s)	740
Sse9I	AATT	4 cut(s)	24, 608, 711, 717
SsiI	CCGC	2 cut(s)	53, 154
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	399, 486, 770
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	1 cut(s)	763
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	2 cut(s)	61, 740
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	4 cut(s)	24, 608, 711, 717
TauI	GCSGC	2 cut(s)	55, 156
TfiI	GAWTC	2 cut(s)	309, 767
TscAI	CASTG	1 cut(s)	154
TspDTI	ATGAA	6 cut(s)	111, 190, 340, 361, 553, 561
TspRI	CASTG	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	542
XceI	RCATGY	1 cut(s)	739
XcmI	CCANNNNNNNNNTGG	1 cut(s)	644
XspI	CTAG	1 cut(s)	305
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.