Rh2BG276200

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008495
Physical Location & Seq
Reverse (-)
30072688 .. 30074064
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG276200.1

Sequence Viewer

Length: 393 bp
ATGACTGGATGCGTGATCCTATTTCCAATAGCCATCACTTTCTACATAACTTGGTGGTTTATTCACTTTGTGGATGGCTTCTTCTCTCCAATATATGCTCAGCTAGGAATCAACATTTTCGGTCTTGGATTCGTAACTTCCATTACATTCATATTTTTGGTTGGGGTGTTCATGTCATCATGGCTGGGTGCATCTGTCCTGGGTCTTGGTGAGTGGTTTATCAAAAGAATGCCATTTGTTCGTCATAACTACAATGCCTCCAAGCAGATTAGTTCTGCCATATCCCCAGATCAAAACACGCAAGCCTTCGAGGAAGTGGCCTTCATAAGGCATCCACGTATTGGAGAATATGCATTTGGGTTCATTACTTCATCAGTTACCCTTCAAGTCTGA

Protein Analysis

130

Amino Acids

14.71

Weight (kDa)

6.81

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF502 PF04367 46 - 126 8.2e-21 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 341
AclWI GGATC 1 cut(s) 10
AdeI CACNNNGTG 1 cut(s) 70
AfiI CCNNNNNNNGG 2 cut(s) 327, 341
AgsI TTSAA 1 cut(s) 386
AjnI CCWGG 1 cut(s) 198
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
AlwI GGATC 1 cut(s) 10
AoxI GGCC 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 221
BccI CCATC 2 cut(s) 41, 68
BciT130I CCWGG 1 cut(s) 200
BfaI CTAG 1 cut(s) 104
BlpI GCTNAGC 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 2 cut(s) 200, 340
Bpu1102I GCTNAGC 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 327, 341
Bse1I ACTGG 1 cut(s) 10
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 3 cut(s) 14, 79, 331
BseLI CCNNNNNNNGG 2 cut(s) 327, 341
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 10
BseYI CCCAGC 1 cut(s) 184
BshFI GGCC 1 cut(s) 320
BslI CCNNNNNNNGG 2 cut(s) 327, 341
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 1 cut(s) 320
Bsp143I GATC 2 cut(s) 15, 289
Bsp1720I GCTNAGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 1 cut(s) 112
BspPI GGATC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 2 cut(s) 15, 289
Bst2UI CCWGG 1 cut(s) 200
BstBAI YACGTR 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 99
BstENI CCTNNNNNAGG 1 cut(s) 325
BstF5I GGATG 3 cut(s) 14, 79, 331
BstKTI GATC 2 cut(s) 18, 292
BstMBI GATC 2 cut(s) 15, 289
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BsuRI GGCC 1 cut(s) 320
BtsCI GGATG 3 cut(s) 14, 79, 331
Cac8I GCNNGC 1 cut(s) 303
CviAII CATG 2 cut(s) 172, 180
CviJI RGCY 6 cut(s) 32, 78, 103, 184, 305, 320
CviKI_1 RGCY 6 cut(s) 32, 78, 103, 184, 305, 320
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 17, 291
DpnII GATC 2 cut(s) 15, 289
DraIII CACNNNGTG 1 cut(s) 70
EcoNI CCTNNNNNAGG 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 355
FaeI CATG 2 cut(s) 175, 183
FatI CATG 2 cut(s) 171, 179
FokI GGATG 3 cut(s) 21, 86, 318
FspBI CTAG 1 cut(s) 104
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 1 cut(s) 320
Hin1II CATG 2 cut(s) 175, 183
HinfI GANTC 2 cut(s) 108, 129
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 1 cut(s) 392
HpyAV CCTTC 3 cut(s) 316, 331, 392
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 2 cut(s) 191, 353
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 337
Hsp92II CATG 2 cut(s) 175, 183
Kzo9I GATC 2 cut(s) 15, 289
LpnPI CCDG 4 cut(s) 170, 185, 212, 300
LweI GCATC 2 cut(s) 200, 340
MaeI CTAG 1 cut(s) 104
MaeII ACGT 1 cut(s) 337
MaeIII GTNAC 2 cut(s) 133, 376
MalI GATC 2 cut(s) 17, 291
MboI GATC 2 cut(s) 15, 289
MboII GAAGA 1 cut(s) 73
MnlI CCTC 2 cut(s) 268, 304
Mph1103I ATGCAT 1 cut(s) 355
MspR9I CCNGG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 234
MvaI CCWGG 1 cut(s) 200
NdeII GATC 2 cut(s) 15, 289
NlaIII CATG 2 cut(s) 175, 183
NsiI ATGCAT 1 cut(s) 355
PctI GAATGC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 108, 129
PflMI CCANNNNNTGG 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 1 cut(s) 198
Sau3AI GATC 2 cut(s) 15, 289
ScrFI CCNGG 1 cut(s) 200
SetI ASST 2 cut(s) 105, 340
SfaNI GCATC 2 cut(s) 200, 340
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 198
TaiI ACGT 1 cut(s) 340
TaqI TCGA 1 cut(s) 309
TaqII GACCGA 1 cut(s) 110
TfiI GAWTC 2 cut(s) 108, 129
TspDTI ATGAA 5 cut(s) 139, 160, 313, 352, 360
Van91I CCANNNNNTGG 1 cut(s) 341
XagI CCTNNNNNAGG 1 cut(s) 325
XspI CTAG 1 cut(s) 104
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.