Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008495

Physical Location & Seq

Genomic Coordinates Reverse (-)

9734382 .. 9738077

Gene Structure 3696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG109500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGACTGGATGCGTGATCCTATTTCCAATAGCCATCACTTTCTACATAACTTGGTGGTTTATTCACTTTGTGGATGGCTTCTTCTCTCCAATATATGCTCAACTAGGAATCAACATTTTCGGTCTTGGATTCGTAACTTCCATTACATTCATATATTTGGTTGGGGTGTTCATGTCATCATGGCTGGGTGCATCTGTCCTGGGTCTCGGTGAGTGGTTTATCAAAAGAATGCCATTCGTTCGTCATATCTACAATGCCTCCAAGCATATTAGTTCTGCCATATCCCCAGGTGTGCTTTATAATATCTTTCACTTGTTTGACCGAATGGATATAGGAGGGCAATTAATAATCTTTAGCTTTTTGGTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0007389 GO:0008150 GO:0010051 GO:0010222 GO:0012505 GO:0016020 GO:0016021 GO:0031224 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

123

Amino Acids

14.03

Weight (kDa)

7.95

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF502	PF04367	46 - 95	7.9e-13	Protein of unknown function (DUF502)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20120 AT2G20120 AT2G20130
fragaria_vesca	FvH4_1g04490 FvH4_1g04490 FvH4_1g04490
malus_domestica	MD02G1044400.v1.1 MD15G1182700.v1.1
prunus_persica	Prupe.7G232900_v2.0.a1
pyrus_communis	pycom02g03750 pycom15g16510
rosa_chinensis	RchiOBHm_Chr2g0090091
rosa_laevigata	RLG00000016084
rosa_multiflora	Rmu_sc0008968.1_g000005
rosa_roxburghii	Rroxscaffold_2G00151400
rosa_rugosa	Rorug02G0005200
rosa_samantha	Rh2AG051000 Rh2AG109500 Rh2BG049700 Rh2BG276200 Rh2CG051900 Rh2DG051200
rosa_wichuraiana	Rw2G004570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
AclWI	GGATC	1 cut(s)	10
AdeI	CACNNNGTG	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	198, 286
AluBI	AGCT	1 cut(s)	357
AluI	AGCT	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	10
AseI	ATTAAT	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	221
BccI	CCATC	2 cut(s)	41, 68
BciT130I	CCWGG	2 cut(s)	200, 288
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	104, 370
Bme1390I	CCNGG	2 cut(s)	200, 288
BmrFI	CCNGG	2 cut(s)	200, 288
BmsI	GCATC	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	199, 286
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bse1I	ACTGG	1 cut(s)	10
BseBI	CCWGG	2 cut(s)	200, 288
BseDI	CCNNGG	2 cut(s)	199, 286
BseGI	GGATG	2 cut(s)	14, 79
BseNI	ACTGG	1 cut(s)	10
BseYI	CCCAGC	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	234
Bso31I	GGTCTC	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	15
BspPI	GGATC	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	2 cut(s)	199, 286
BssMI	GATC	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	200, 288
BstF5I	GGATG	2 cut(s)	14, 79
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	1 cut(s)	15
BstNI	CCWGG	2 cut(s)	200, 288
BstSCI	CCNGG	2 cut(s)	198, 286
BtsCI	GGATG	2 cut(s)	14, 79
CviAII	CATG	2 cut(s)	172, 180
CviJI	RGCY	4 cut(s)	32, 78, 184, 357
CviKI_1	RGCY	4 cut(s)	32, 78, 184, 357
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
DraIII	CACNNNGTG	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	198, 286
FaeI	CATG	2 cut(s)	175, 183
FatI	CATG	2 cut(s)	171, 179
FokI	GGATG	2 cut(s)	21, 86
FspBI	CTAG	2 cut(s)	104, 370
GsaI	CCCAGC	1 cut(s)	188
Hin1II	CATG	2 cut(s)	175, 183
HinfI	GANTC	2 cut(s)	108, 129
HphI	GGTGA	1 cut(s)	221
HpyCH4V	TGCA	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	175, 183
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	5 cut(s)	170, 185, 212, 273, 300
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	2 cut(s)	104, 370
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	1 cut(s)	73
MluCI	AATT	1 cut(s)	341
MnlI	CCTC	2 cut(s)	268, 329
MseI	TTAA	1 cut(s)	344
MspR9I	CCNGG	2 cut(s)	200, 288
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	2 cut(s)	200, 288
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	2 cut(s)	175, 183
PctI	GAATGC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	108, 129
PshBI	ATTAAT	1 cut(s)	344
PsiI	TTATAA	1 cut(s)	300
Psp6I	CCWGG	2 cut(s)	198, 286
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	2 cut(s)	198, 286
SaqAI	TTAA	1 cut(s)	344
Sau3AI	GATC	1 cut(s)	15
ScrFI	CCNGG	2 cut(s)	200, 288
SetI	ASST	2 cut(s)	292, 359
SfaNI	GCATC	1 cut(s)	200
Sse9I	AATT	1 cut(s)	341
SspMI	CTAG	2 cut(s)	104, 370
StyD4I	CCNGG	2 cut(s)	198, 286
TaqII	GACCGA	2 cut(s)	110, 336
TasI	AATT	1 cut(s)	341
TfiI	GAWTC	2 cut(s)	108, 129
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	139, 160
VspI	ATTAAT	1 cut(s)	344
XspI	CTAG	2 cut(s)	104, 370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.