Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008495

Physical Location & Seq

Genomic Coordinates Forward (+)

11575081 .. 11578388

Gene Structure 3308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g16510.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGCGATGAGAAGTCGTCGTCATCGATTGTAATGGCGAGCAGAGACAGAGAACCGCGAGACCGTGAGCTTCTCATTCCCGTGGCGGACTCCGGCGACGAGGATGCATCGTCCAAACCCTCCTCTTCGTCTTCCTCCTCCTCCCACCACACCGGCCGCGAGACGTTTTCCAAAGTTGTTAGAAGTTGGGCATCAAAAAAGTTCATGACAGGATGTGTGATCCTATTTCCAATAGCGATCACTTTCTATATCACATGGTGGTTCATTCACTTTGTGGATGGCTTCTTCTCTCCGATCTATGCTCAACTTGGAATCAACATTTTTGGTCTTGGATTTGTAACTTCCATAACATTCATATTTCTCGTTGGGGTGTTCATGTCATCATGGTTGGGTGCATCTGTCCTGGGCCTTGGTGAGTGGTTTATCAAAAGAATGCCGTTTGTTCGTCATATCTACAATGCCTCCAAGCAGATTAGTTCTGCCATATCCCCAGATCAAAACACACAAGCCTTCAAGGAAGTGGCCATAATAAGGCATCCACGTATTGGTGAATATGCATTCGGGTTCATCACTTCATCCGTTGTCCTACAGAGTTATTCTGGAGATGAGGAGTTGTGCTGTGTTTATGTTCCCACGAACCATCTTTACATTGGTGATGTGTTCCTGGTCAACACCAAGGATGTTATCAGACCAAATTTATCCGTACGGGAGGGAATTGAAATCGTTGTGTCTGGAGGCATGTCAATGCCCCAGATCCTGTCAACGGTTGATTCGCGGATCATGCCAGTGGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0007389 GO:0008150 GO:0010051 GO:0010222 GO:0012505 GO:0016020 GO:0016021 GO:0031224 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

266

Amino Acids

29.48

Weight (kDa)

6.3

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20120 AT2G20120 AT2G20130
fragaria_vesca	FvH4_1g04490 FvH4_1g04490 FvH4_1g04490
malus_domestica	MD02G1044400.v1.1 MD15G1182700.v1.1
prunus_persica	Prupe.7G232900_v2.0.a1
pyrus_communis	pycom02g03750 pycom15g16510
rosa_chinensis	RchiOBHm_Chr2g0090091
rosa_laevigata	RLG00000016084
rosa_multiflora	Rmu_sc0008968.1_g000005
rosa_roxburghii	Rroxscaffold_2G00151400
rosa_rugosa	Rorug02G0005200
rosa_samantha	Rh2AG051000 Rh2AG109500 Rh2BG049700 Rh2BG276200 Rh2CG051900 Rh2DG051200
rosa_wichuraiana	Rw2G004570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	545
AccII	CGCG	3 cut(s)	58, 159, 775
AciI	CCGC	4 cut(s)	56, 86, 157, 775
AclWI	GGATC	3 cut(s)	214, 748, 785
AcoI	YGGCCR	2 cut(s)	154, 522
AcsI	RAATTY	1 cut(s)	694
AdeI	CACNNNGTG	2 cut(s)	258, 274
AfaI	GTAC	1 cut(s)	705
AfiI	CCNNNNNNNGG	3 cut(s)	531, 545, 763
AgsI	TTSAA	2 cut(s)	514, 719
AjnI	CCWGG	2 cut(s)	402, 663
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	3 cut(s)	39, 54, 155
AlwI	GGATC	3 cut(s)	214, 748, 785
AlwNI	CAGNNNCTG	1 cut(s)	757
AoxI	GGCC	3 cut(s)	154, 406, 522
ApoI	RAATTY	1 cut(s)	694
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	3 cut(s)	425, 560, 665
BalI	TGGCCA	1 cut(s)	524
BbsI	GAAGAC	1 cut(s)	123
BccI	CCATC	2 cut(s)	272, 648
BceAI	ACGGC	1 cut(s)	421
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	2 cut(s)	404, 665
BcoDI	GTCTC	3 cut(s)	39, 54, 155
BfmI	CTRYAG	1 cut(s)	587
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
Bme1390I	CCNGG	2 cut(s)	404, 665
BmgT120I	GGNCC	1 cut(s)	406
BmrFI	CCNGG	2 cut(s)	404, 665
BmsI	GCATC	5 cut(s)	94, 116, 200, 404, 544
BpiI	GAAGAC	1 cut(s)	123
BpmI	CTGGAG	2 cut(s)	621, 753
Bsa29I	ATCGAT	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	542
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	4 cut(s)	81, 403, 409, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	3 cut(s)	531, 545, 763
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	785
BseBI	CCWGG	2 cut(s)	404, 665
BseCI	ATCGAT	1 cut(s)	26
BseDI	CCNNGG	4 cut(s)	81, 403, 409, 675
BseGI	GGATG	6 cut(s)	109, 218, 283, 535, 575, 685
BseLI	CCNNNNNNNGG	3 cut(s)	531, 545, 763
BseNI	ACTGG	1 cut(s)	785
BseRI	GAGGAG	4 cut(s)	112, 127, 130, 623
BseX3I	CGGCCG	1 cut(s)	154
Bsh1236I	CGCG	3 cut(s)	58, 159, 775
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	3 cut(s)	156, 408, 524
BshVI	ATCGAT	1 cut(s)	26
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	93, 153
BsiWI	CGTACG	1 cut(s)	703
BslI	CCNNNNNNNGG	3 cut(s)	531, 545, 763
BsmAI	GTCTC	3 cut(s)	39, 54, 155
BsmBI	CGTCTC	1 cut(s)	155
BsmI	GAATGC	2 cut(s)	438, 557
BsnI	GGCC	3 cut(s)	156, 408, 524
Bso31I	GGTCTC	1 cut(s)	54
Bsp143I	GATC	6 cut(s)	219, 237, 294, 493, 753, 777
BspACI	CCGC	4 cut(s)	56, 86, 157, 775
BspANI	GGCC	3 cut(s)	156, 408, 524
BspDI	ATCGAT	1 cut(s)	26
BspFNI	CGCG	3 cut(s)	58, 159, 775
BspHI	TCATGA	1 cut(s)	204
BspPI	GGATC	3 cut(s)	214, 748, 785
BspTNI	GGTCTC	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	785
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	4 cut(s)	81, 403, 409, 675
BssMI	GATC	6 cut(s)	219, 237, 294, 493, 753, 777
BssT1I	CCWWGG	2 cut(s)	409, 675
Bst2UI	CCWGG	2 cut(s)	404, 665
Bst4CI	ACNGT	2 cut(s)	65, 766
Bst6I	CTCTTC	1 cut(s)	130
BstBAI	YACGTR	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	40
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	6 cut(s)	109, 218, 283, 535, 575, 685
BstFNI	CGCG	3 cut(s)	58, 159, 775
BstKTI	GATC	6 cut(s)	222, 240, 297, 496, 756, 780
BstMAI	GTCTC	3 cut(s)	39, 54, 155
BstMBI	GATC	6 cut(s)	219, 237, 294, 493, 753, 777
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	781
BstNI	CCWGG	2 cut(s)	404, 665
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	2 cut(s)	402, 663
BstSFI	CTRYAG	1 cut(s)	587
BstUI	CGCG	3 cut(s)	58, 159, 775
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	753
BstYI	RGATCY	1 cut(s)	753
BstZI	CGGCCG	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	26
BsuRI	GGCC	3 cut(s)	156, 408, 524
BsuTUI	ATCGAT	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	6 cut(s)	109, 218, 283, 535, 575, 685
BtsIMutI	CAGTG	1 cut(s)	792
Cac8I	GCNNGC	1 cut(s)	40
CaiI	CAGNNNCTG	1 cut(s)	757
CciI	TCATGA	1 cut(s)	204
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	406
ClaI	ATCGAT	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	704
CviAII	CATG	6 cut(s)	205, 255, 376, 384, 739, 781
CviJI	RGCY	6 cut(s)	70, 156, 282, 408, 509, 524
CviKI_1	RGCY	6 cut(s)	70, 156, 282, 408, 509, 524
CviQI	GTAC	1 cut(s)	704
DpnI	GATC	6 cut(s)	221, 239, 296, 495, 755, 779
DpnII	GATC	6 cut(s)	219, 237, 294, 493, 753, 777
DraIII	CACNNNGTG	2 cut(s)	258, 274
EaeI	YGGCCR	2 cut(s)	154, 522
EagI	CGGCCG	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	101
EclXI	CGGCCG	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	409, 675
Eco31I	GGTCTC	1 cut(s)	54
Eco52I	CGGCCG	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	402, 663
EcoT14I	CCWWGG	2 cut(s)	409, 675
EcoT22I	ATGCAT	2 cut(s)	109, 559
ErhI	CCWWGG	2 cut(s)	409, 675
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	6 cut(s)	208, 258, 379, 387, 742, 784
FatI	CATG	6 cut(s)	204, 254, 375, 383, 738, 780
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	6 cut(s)	116, 225, 290, 522, 562, 692
Fsp4HI	GCNGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	157
GsuI	CTGGAG	2 cut(s)	621, 753
HaeIII	GGCC	3 cut(s)	156, 408, 524
HapII	CCGG	2 cut(s)	93, 153
Hin1II	CATG	6 cut(s)	208, 258, 379, 387, 742, 784
HincII	GTYRAC	2 cut(s)	670, 762
HindII	GTYRAC	2 cut(s)	670, 762
HinfI	GANTC	3 cut(s)	89, 312, 770
HpaII	CCGG	2 cut(s)	93, 153
HphI	GGTGA	3 cut(s)	425, 560, 665
Hpy166II	GTNNAC	2 cut(s)	670, 762
Hpy188I	TCNGA	2 cut(s)	294, 689
Hpy188III	TCNNGA	3 cut(s)	205, 600, 732
Hpy8I	GTNNAC	2 cut(s)	670, 762
Hpy99I	CGWCG	2 cut(s)	22, 101
HpyAV	CCTTC	1 cut(s)	520
HpyCH4III	ACNGT	2 cut(s)	65, 766
HpyCH4IV	ACGT	2 cut(s)	164, 541
HpyCH4V	TGCA	3 cut(s)	107, 395, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	781
HpySE526I	ACGT	2 cut(s)	164, 541
Hsp92II	CATG	6 cut(s)	208, 258, 379, 387, 742, 784
Kzo9I	GATC	6 cut(s)	219, 237, 294, 493, 753, 777
LweI	GCATC	5 cut(s)	94, 116, 200, 404, 544
MaeII	ACGT	2 cut(s)	164, 541
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	6 cut(s)	221, 239, 296, 495, 755, 779
MboI	GATC	6 cut(s)	219, 237, 294, 493, 753, 777
MboII	GAAGA	3 cut(s)	117, 123, 277
MflI	RGATCY	1 cut(s)	753
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	2 cut(s)	694, 714
MluNI	TGGCCA	1 cut(s)	524
MlyI	GAGTC	1 cut(s)	83
Mox20I	TGGCCA	1 cut(s)	524
Mph1103I	ATGCAT	2 cut(s)	109, 559
MscI	TGGCCA	1 cut(s)	524
MslI	CAYNNNNRTG	3 cut(s)	80, 743, 785
Msp20I	TGGCCA	1 cut(s)	524
MspI	CCGG	2 cut(s)	93, 153
MspR9I	CCNGG	2 cut(s)	404, 665
Mva1269I	GAATGC	2 cut(s)	438, 557
MvaI	CCWGG	2 cut(s)	404, 665
MvnI	CGCG	3 cut(s)	58, 159, 775
MwoI	GCNNNNNNNGC	1 cut(s)	781
NdeII	GATC	6 cut(s)	219, 237, 294, 493, 753, 777
NlaIII	CATG	6 cut(s)	208, 258, 379, 387, 742, 784
NsiI	ATGCAT	2 cut(s)	109, 559
NspI	RCATGY	1 cut(s)	742
PagI	TCATGA	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PctI	GAATGC	2 cut(s)	438, 557
PfeI	GAWTC	2 cut(s)	312, 770
Pfl23II	CGTACG	1 cut(s)	703
PflMI	CCANNNNNTGG	1 cut(s)	545
PkrI	GCNGC	1 cut(s)	158
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Ppu21I	YACGTR	1 cut(s)	542
Psp6I	CCWGG	2 cut(s)	402, 663
PspGI	CCWGG	2 cut(s)	402, 663
PspLI	CGTACG	1 cut(s)	703
PspPI	GGNCC	1 cut(s)	406
PsrI	GAACNNNNNNTAC	2 cut(s)	629, 661
PstNI	CAGNNNCTG	1 cut(s)	757
PsuI	RGATCY	1 cut(s)	753
RsaI	GTAC	1 cut(s)	705
RsaNI	GTAC	1 cut(s)	704
RseI	CAYNNNNRTG	3 cut(s)	80, 743, 785
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	6 cut(s)	219, 237, 294, 493, 753, 777
Sau96I	GGNCC	1 cut(s)	406
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	404, 665
SetI	ASST	3 cut(s)	72, 167, 544
SfaNI	GCATC	5 cut(s)	94, 116, 200, 404, 544
SfcI	CTRYAG	1 cut(s)	587
SmiMI	CAYNNNNRTG	3 cut(s)	80, 743, 785
Sse9I	AATT	2 cut(s)	694, 714
SsiI	CCGC	4 cut(s)	56, 86, 157, 775
StyD4I	CCNGG	2 cut(s)	402, 663
StyI	CCWWGG	2 cut(s)	409, 675
TaaI	ACNGT	2 cut(s)	65, 766
TaiI	ACGT	2 cut(s)	167, 544
TaqI	TCGA	1 cut(s)	26
TasI	AATT	2 cut(s)	694, 714
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	312, 770
TscAI	CASTG	1 cut(s)	792
TspDTI	ATGAA	6 cut(s)	193, 253, 343, 364, 556, 564
TspGWI	ACGGA	2 cut(s)	568, 691
TspRI	CASTG	1 cut(s)	792
Van91I	CCANNNNNTGG	1 cut(s)	545
XapI	RAATTY	1 cut(s)	694
XceI	RCATGY	1 cut(s)	742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	647
Zsp2I	ATGCAT	2 cut(s)	109, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.