Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008495

Physical Location & Seq

Genomic Coordinates Forward (+)

3781536 .. 3785548

Gene Structure 4013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016084

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCGGAAAATACAAAGGAAGAAGAAGCAAACCAAGATCAGGAGAAAAGCTCAGAGTCTTTCGCTGTTCTGGAAATTCCCGGCGGCGGCGTTAAAACGGCGTCGCTTTAAATTTCTGGGTGTGTGGGTGATGGGCGATGAGAAGTCGTCGTCGTCGTCGTCAATTGTAATGGCAAGCAGCAGAGACAGAGAGCCGCGAGATCGAGAGCTTCTCATTCCGGTCGCCGACTCCGGCGATGAAGACCTTTCTTCCAAGCCGTCTTCGTCTTCGTCCTCCTCGCACCACCTCACTGGCCGCGAGACTTTTTACAAAGTTTTTAGAAGTTGGGCGTCAAAGAAGTTCATGACTGGATGCGTGATCCTATTTCCAATAGCCATCACTTTCTACATAACTTGGTGGTTTATTCACTTTGTGGATGGCTTCTTCTCTCCAATATATGCTCAGCTAGGAATCAACATTTTCGGTCTTGGATTCGTAACTTCCATTACATTCATATTTTTGGTTGGGGTGTTCATGTCATCATGGCTGGGTGCATCTGTCCTGGGTCTCGGTGAGTGGTTTATCAAAAGAATGCCATTCGTTCGTCATATCTACAATGCCTCCAAGCAGATTAGTTCCGCCATATCCCCAGATCAAAACACGCAAGCCTTCAAGGAAGTGGCCATCATAAGGCATCCACGTATTGGAGAATATGCATTTGGGTTCATTACTTCATCAGTTACCCTTCAGAACTATGCTGGTGATGAGGAATTGTGCTGTGTTTATGTTCCCACGAACCATTTGTATATTGGTGATGTCTTTCTGGTCAGCACCAAGGATGTGATCAGGCCAAATTTATCTGTACGGGAAGGAATTGAAATTGTTGTGTCTGGAGGCATGTCGATGCCCCAGATCCTGTCAACGGTTGATTCCCGGATTATGCCAGTGGTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0007389 GO:0008150 GO:0010051 GO:0010222 GO:0012505 GO:0016020 GO:0016021 GO:0031224 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

312

Amino Acids

35.13

Weight (kDa)

9.81

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF502	PF04367	160 - 260	2.3e-27	Protein of unknown function (DUF502)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20120 AT2G20120 AT2G20130
fragaria_vesca	FvH4_1g04490 FvH4_1g04490 FvH4_1g04490
malus_domestica	MD02G1044400.v1.1 MD15G1182700.v1.1
prunus_persica	Prupe.7G232900_v2.0.a1
pyrus_communis	pycom02g03750 pycom15g16510
rosa_chinensis	RchiOBHm_Chr2g0090091
rosa_laevigata	RLG00000016084
rosa_multiflora	Rmu_sc0008968.1_g000005
rosa_roxburghii	Rroxscaffold_2G00151400
rosa_rugosa	Rorug02G0005200
rosa_samantha	Rh2AG051000 Rh2AG109500 Rh2BG049700 Rh2BG276200 Rh2CG051900 Rh2DG051200
rosa_wichuraiana	Rw2G004570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	683
AccII	CGCG	2 cut(s)	196, 297
AciI	CCGC	6 cut(s)	4, 83, 86, 194, 295, 618
AclWI	GGATC	2 cut(s)	352, 886
AcoI	YGGCCR	2 cut(s)	292, 660
AcsI	RAATTY	3 cut(s)	74, 110, 832
AcuI	CTGAAG	1 cut(s)	710
AcyI	GRCGYC	2 cut(s)	100, 329
AdeI	CACNNNGTG	1 cut(s)	412
AfaI	GTAC	1 cut(s)	843
AfiI	CCNNNNNNNGG	5 cut(s)	39, 85, 669, 683, 901
AgsI	TTSAA	2 cut(s)	652, 857
AjnI	CCWGG	1 cut(s)	540
AjuI	GAANNNNNNNTTGG	2 cut(s)	681, 713
AluBI	AGCT	4 cut(s)	50, 208, 445, 933
AluI	AGCT	4 cut(s)	50, 208, 445, 933
Alw26I	GTCTC	3 cut(s)	177, 293, 551
AlwI	GGATC	2 cut(s)	352, 886
AlwNI	CAGNNNCTG	1 cut(s)	895
AoxI	GGCC	3 cut(s)	292, 660, 827
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	3 cut(s)	74, 110, 832
AsuC2I	CCSGG	2 cut(s)	80, 913
AsuHPI	GGTGA	4 cut(s)	139, 563, 752, 803
BalI	TGGCCA	1 cut(s)	662
BbsI	GAAGAC	3 cut(s)	246, 252, 258
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	4 cut(s)	124, 383, 410, 671
BceAI	ACGGC	2 cut(s)	113, 241
BciT130I	CCWGG	1 cut(s)	542
BclI	TGATCA	1 cut(s)	822
BcnI	CCSGG	2 cut(s)	80, 913
BcoDI	GTCTC	3 cut(s)	177, 293, 551
BfaI	CTAG	1 cut(s)	446
BisI	GCNGC	5 cut(s)	84, 87, 178, 194, 295
BlpI	GCTNAGC	1 cut(s)	441
BlsI	GCNGC	5 cut(s)	85, 88, 179, 195, 296
Bme1390I	CCNGG	3 cut(s)	80, 542, 913
BmrFI	CCNGG	3 cut(s)	80, 542, 913
BmsI	GCATC	4 cut(s)	341, 542, 682, 873
BpiI	GAAGAC	3 cut(s)	246, 252, 258
BplI	GAGNNNNNCTC	4 cut(s)	34, 66, 195, 227
BpmI	CTGGAG	1 cut(s)	891
Bpu1102I	GCTNAGC	1 cut(s)	441
BpuMI	CCSGG	2 cut(s)	80, 913
BsaAI	YACGTR	1 cut(s)	680
BsaHI	GRCGYC	2 cut(s)	100, 329
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	541, 813
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bsc4I	CCNNNNNNNGG	5 cut(s)	39, 85, 669, 683, 901
Bse1I	ACTGG	3 cut(s)	295, 352, 923
BseBI	CCWGG	1 cut(s)	542
BseDI	CCNNGG	2 cut(s)	541, 813
BseGI	GGATG	4 cut(s)	356, 421, 673, 823
BseLI	CCNNNNNNNGG	5 cut(s)	39, 85, 669, 683, 901
BseMII	CTCAG	2 cut(s)	65, 455
BseNI	ACTGG	3 cut(s)	295, 352, 923
BseRI	GAGGAG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	189
BseYI	CCCAGC	1 cut(s)	526
Bsh1236I	CGCG	2 cut(s)	196, 297
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	294, 662, 829
BsiEI	CGRYCG	1 cut(s)	222
BsiSI	CCGG	4 cut(s)	80, 218, 231, 913
BslI	CCNNNNNNNGG	5 cut(s)	39, 85, 669, 683, 901
BsmAI	GTCTC	3 cut(s)	177, 293, 551
BsmI	GAATGC	1 cut(s)	576
BsnI	GGCC	3 cut(s)	294, 662, 829
Bso31I	GGTCTC	1 cut(s)	551
Bsp143I	GATC	6 cut(s)	36, 199, 357, 631, 822, 891
Bsp1720I	GCTNAGC	1 cut(s)	441
BspACI	CCGC	6 cut(s)	4, 83, 86, 194, 295, 618
BspANI	GGCC	3 cut(s)	294, 662, 829
BspCNI	CTCAG	2 cut(s)	64, 454
BspFNI	CGCG	2 cut(s)	196, 297
BspHI	TCATGA	1 cut(s)	342
BspPI	GGATC	2 cut(s)	352, 886
BspTNI	GGTCTC	1 cut(s)	551
BsrI	ACTGG	3 cut(s)	295, 352, 923
BssECI	CCNNGG	2 cut(s)	541, 813
BssMI	GATC	6 cut(s)	36, 199, 357, 631, 822, 891
BssNI	GRCGYC	2 cut(s)	100, 329
BssT1I	CCWWGG	1 cut(s)	813
Bst2UI	CCWGG	1 cut(s)	542
Bst4CI	ACNGT	1 cut(s)	904
BstACI	GRCGYC	2 cut(s)	100, 329
BstBAI	YACGTR	1 cut(s)	680
BstC8I	GCNNGC	2 cut(s)	175, 645
BstDEI	CTNAG	2 cut(s)	51, 441
BstF5I	GGATG	4 cut(s)	356, 421, 673, 823
BstFNI	CGCG	2 cut(s)	196, 297
BstKTI	GATC	6 cut(s)	39, 202, 360, 634, 825, 894
BstMAI	GTCTC	3 cut(s)	177, 293, 551
BstMBI	GATC	6 cut(s)	36, 199, 357, 631, 822, 891
BstMCI	CGRYCG	1 cut(s)	222
BstNI	CCWGG	1 cut(s)	542
BstNSI	RCATGY	1 cut(s)	880
BstSCI	CCNGG	3 cut(s)	78, 540, 911
BstUI	CGCG	2 cut(s)	196, 297
BstV1I	GCAGC	1 cut(s)	189
BstV2I	GAAGAC	3 cut(s)	246, 252, 258
BstX2I	RGATCY	1 cut(s)	891
BstXI	CCANNNNNNTGG	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	891
BsuRI	GGCC	3 cut(s)	294, 662, 829
BtgZI	GCGATG	2 cut(s)	150, 249
BtsCI	GGATG	4 cut(s)	356, 421, 673, 823
BtsIMutI	CAGTG	2 cut(s)	288, 930
Cac8I	GCNNGC	2 cut(s)	175, 645
CaiI	CAGNNNCTG	1 cut(s)	895
CciI	TCATGA	1 cut(s)	342
CseI	GACGC	2 cut(s)	89, 318
Csp6I	GTAC	1 cut(s)	842
CviAII	CATG	4 cut(s)	343, 514, 522, 877
CviQI	GTAC	1 cut(s)	842
DdeI	CTNAG	2 cut(s)	51, 441
DpnI	GATC	6 cut(s)	38, 201, 359, 633, 824, 893
DpnII	GATC	6 cut(s)	36, 199, 357, 631, 822, 891
DraI	TTTAAA	1 cut(s)	109
DraIII	CACNNNGTG	1 cut(s)	412
EaeI	YGGCCR	2 cut(s)	292, 660
EciI	GGCGGA	1 cut(s)	607
Eco130I	CCWWGG	1 cut(s)	813
Eco31I	GGTCTC	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	540
EcoT14I	CCWWGG	1 cut(s)	813
EcoT22I	ATGCAT	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	813
FaeI	CATG	4 cut(s)	346, 517, 525, 880
FatI	CATG	4 cut(s)	342, 513, 521, 876
FbaI	TGATCA	1 cut(s)	822
Fnu4HI	GCNGC	5 cut(s)	84, 87, 178, 194, 295
FokI	GGATG	4 cut(s)	363, 428, 660, 830
Fsp4HI	GCNGC	5 cut(s)	84, 87, 178, 194, 295
FspBI	CTAG	1 cut(s)	446
GluI	GCNGC	5 cut(s)	84, 87, 178, 194, 295
GsaI	CCCAGC	1 cut(s)	530
GsuI	CTGGAG	1 cut(s)	891
HaeIII	GGCC	3 cut(s)	294, 662, 829
HapII	CCGG	4 cut(s)	80, 218, 231, 913
HgaI	GACGC	2 cut(s)	89, 318
Hin1I	GRCGYC	2 cut(s)	100, 329
Hin1II	CATG	4 cut(s)	346, 517, 525, 880
HincII	GTYRAC	1 cut(s)	900
HindII	GTYRAC	1 cut(s)	900
HinfI	GANTC	5 cut(s)	55, 227, 450, 471, 908
HpaII	CCGG	4 cut(s)	80, 218, 231, 913
HphI	GGTGA	4 cut(s)	139, 563, 752, 803
Hpy166II	GTNNAC	1 cut(s)	900
Hpy188I	TCNGA	2 cut(s)	54, 729
Hpy188III	TCNNGA	5 cut(s)	40, 70, 203, 343, 870
Hpy8I	GTNNAC	1 cut(s)	900
Hpy99I	CGWCG	5 cut(s)	105, 151, 154, 157, 160
HpyAV	CCTTC	3 cut(s)	658, 734, 842
HpyCH4III	ACNGT	1 cut(s)	904
HpyCH4IV	ACGT	1 cut(s)	679
HpyCH4V	TGCA	2 cut(s)	533, 695
HpyF3I	CTNAG	2 cut(s)	51, 441
HpySE526I	ACGT	1 cut(s)	679
Hsp92I	GRCGYC	2 cut(s)	100, 329
Hsp92II	CATG	4 cut(s)	346, 517, 525, 880
Ksp22I	TGATCA	1 cut(s)	822
Kzo9I	GATC	6 cut(s)	36, 199, 357, 631, 822, 891
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	4 cut(s)	341, 542, 682, 873
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	1 cut(s)	679
MaeIII	GTNAC	2 cut(s)	475, 718
MalI	GATC	6 cut(s)	38, 201, 359, 633, 824, 893
MboI	GATC	6 cut(s)	36, 199, 357, 631, 822, 891
MboII	GAAGA	7 cut(s)	31, 34, 240, 251, 252, 258, 415
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	1 cut(s)	891
MlsI	TGGCCA	1 cut(s)	662
MluCI	AATT	7 cut(s)	74, 110, 162, 749, 832, 852, 858
MluNI	TGGCCA	1 cut(s)	662
MlyI	GAGTC	2 cut(s)	64, 221
MnlI	CCTC	6 cut(s)	283, 286, 296, 610, 739, 866
Mox20I	TGGCCA	1 cut(s)	662
Mph1103I	ATGCAT	1 cut(s)	697
MscI	TGGCCA	1 cut(s)	662
MseI	TTAA	2 cut(s)	92, 108
MslI	CAYNNNNRTG	1 cut(s)	881
Msp20I	TGGCCA	1 cut(s)	662
MspI	CCGG	4 cut(s)	80, 218, 231, 913
MspR9I	CCNGG	3 cut(s)	80, 542, 913
MunI	CAATTG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	542
MvnI	CGCG	2 cut(s)	196, 297
NciI	CCSGG	2 cut(s)	80, 913
NdeII	GATC	6 cut(s)	36, 199, 357, 631, 822, 891
NlaIII	CATG	4 cut(s)	346, 517, 525, 880
NsiI	ATGCAT	1 cut(s)	697
NspI	RCATGY	1 cut(s)	880
PagI	TCATGA	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	2 cut(s)	152, 155
PctI	GAATGC	1 cut(s)	576
PfeI	GAWTC	3 cut(s)	450, 471, 908
PflMI	CCANNNNNTGG	1 cut(s)	683
PfoI	TCCNGGA	1 cut(s)	911
PkrI	GCNGC	5 cut(s)	85, 88, 179, 195, 296
PleI	GAGTC	2 cut(s)	63, 221
PpsI	GAGTC	2 cut(s)	63, 221
Ppu21I	YACGTR	1 cut(s)	680
Psp6I	CCWGG	1 cut(s)	540
PspFI	CCCAGC	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	540
PstNI	CAGNNNCTG	1 cut(s)	895
PsuI	RGATCY	1 cut(s)	891
RsaI	GTAC	1 cut(s)	843
RsaNI	GTAC	1 cut(s)	842
RseI	CAYNNNNRTG	1 cut(s)	881
SaqAI	TTAA	2 cut(s)	92, 108
SatI	GCNGC	5 cut(s)	84, 87, 178, 194, 295
Sau3AI	GATC	6 cut(s)	36, 199, 357, 631, 822, 891
SchI	GAGTC	2 cut(s)	64, 221
ScrFI	CCNGG	3 cut(s)	80, 542, 913
SetI	ASST	7 cut(s)	52, 210, 246, 288, 447, 682, 935
SfaNI	GCATC	4 cut(s)	341, 542, 682, 873
SmiMI	CAYNNNNRTG	1 cut(s)	881
Sse9I	AATT	7 cut(s)	74, 110, 162, 749, 832, 852, 858
SsiI	CCGC	6 cut(s)	4, 83, 86, 194, 295, 618
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	3 cut(s)	78, 540, 911
StyI	CCWWGG	1 cut(s)	813
TaaI	ACNGT	1 cut(s)	904
TaiI	ACGT	1 cut(s)	682
TaqI	TCGA	2 cut(s)	202, 881
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	7 cut(s)	74, 110, 162, 749, 832, 852, 858
TauI	GCSGC	4 cut(s)	86, 89, 196, 297
TfiI	GAWTC	3 cut(s)	450, 471, 908
Tru1I	TTAA	2 cut(s)	92, 108
Tru9I	TTAA	2 cut(s)	92, 108
TscAI	CASTG	2 cut(s)	295, 930
TseI	GCWGC	1 cut(s)	177
TspDTI	ATGAA	6 cut(s)	252, 331, 481, 502, 694, 702
TspRI	CASTG	2 cut(s)	295, 930
Van91I	CCANNNNNTGG	1 cut(s)	683
XapI	RAATTY	3 cut(s)	74, 110, 832
XceI	RCATGY	1 cut(s)	880
XcmI	CCANNNNNNNNNTGG	1 cut(s)	785
XspI	CTAG	1 cut(s)	446
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.