Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008968.1

Orthogroup ID

OG0008495

Physical Location & Seq

Genomic Coordinates Forward (+)

15173 .. 18437

Gene Structure 3265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008968.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgggcgatgagaagtcatcgtcgtcgtcgtcaattgtaatggcaagcagtagagacagagagccgcgagatcgagagcttctcattccggtcgccgactccggcgatgaagacctttcttccaagccctcttcgtcttcgtcctcctcgcaccacctcactggccgcgagactttttacaaagtttttagaagttgggcgtcaaagaagttcatgactggatgtgtgatcctatttccaatagccatcactttctacataacttggtggtttattcactttgtggatggcttcttctctccaatatatgctcagctaggaatcaacattttcggtcttggatttgtaacttccattacgttcatatttttggttggggtgttcatgtcatcatggctgggtgcatctgtcctgggtctcggtgagtggtttatcaaaagaatgccattcgttcgtcatatctacaatgcctccaagcagattagttctgccatatccccagatcaaaacacgcaagccttcaaggaagtggccatcataaggcatccacgtattggagaatatgcatttgggttcattacttcatcagttacccttcagaactatgctggtgatgaggaattgtgctgtgtttatgttcccacgaaccatttgtatattggtgatgtctttctggtcagcaccaaggatgtgatcaggccaaatttatccgtacgggaaggaattgaaattgttgtgtctggaggcatgtcgatgccccagatcctgtcaacggttgattcccggattatgccagtggttagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0007389 GO:0008150 GO:0010051 GO:0010222 GO:0012505 GO:0016020 GO:0016021 GO:0031224 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

268

Amino Acids

29.82

Weight (kDa)

6.3

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20120 AT2G20120 AT2G20130
fragaria_vesca	FvH4_1g04490 FvH4_1g04490 FvH4_1g04490
malus_domestica	MD02G1044400.v1.1 MD15G1182700.v1.1
prunus_persica	Prupe.7G232900_v2.0.a1
pyrus_communis	pycom02g03750 pycom15g16510
rosa_chinensis	RchiOBHm_Chr2g0090091
rosa_laevigata	RLG00000016084
rosa_multiflora	Rmu_sc0008968.1_g000005
rosa_roxburghii	Rroxscaffold_2G00151400
rosa_rugosa	Rorug02G0005200
rosa_samantha	Rh2AG051000 Rh2AG109500 Rh2BG049700 Rh2BG276200 Rh2CG051900 Rh2DG051200
rosa_wichuraiana	Rw2G004570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	554
AccII	CGCG	2 cut(s)	67, 168
AciI	CCGC	2 cut(s)	65, 166
AclWI	GGATC	2 cut(s)	223, 757
AcoI	YGGCCR	2 cut(s)	163, 531
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	200
AdeI	CACNNNGTG	1 cut(s)	283
AfaI	GTAC	1 cut(s)	714
AfiI	CCNNNNNNNGG	3 cut(s)	540, 554, 772
AgsI	TTSAA	2 cut(s)	523, 728
AjnI	CCWGG	1 cut(s)	411
AjuI	GAANNNNNNNTTGG	2 cut(s)	552, 584
AluBI	AGCT	3 cut(s)	79, 316, 804
AluI	AGCT	3 cut(s)	79, 316, 804
Alw26I	GTCTC	3 cut(s)	48, 164, 422
AlwI	GGATC	2 cut(s)	223, 757
AlwNI	CAGNNNCTG	1 cut(s)	766
AoxI	GGCC	3 cut(s)	163, 531, 698
ApoI	RAATTY	1 cut(s)	703
AsuC2I	CCSGG	1 cut(s)	784
AsuHPI	GGTGA	3 cut(s)	434, 623, 674
BalI	TGGCCA	1 cut(s)	533
BbsI	GAAGAC	2 cut(s)	117, 129
BccI	CCATC	3 cut(s)	254, 281, 542
BciT130I	CCWGG	1 cut(s)	413
BclI	TGATCA	1 cut(s)	693
BcnI	CCSGG	1 cut(s)	784
BcoDI	GTCTC	3 cut(s)	48, 164, 422
BfaI	CTAG	1 cut(s)	317
BisI	GCNGC	2 cut(s)	65, 166
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	2 cut(s)	66, 167
Bme1390I	CCNGG	2 cut(s)	413, 784
BmrFI	CCNGG	2 cut(s)	413, 784
BmsI	GCATC	3 cut(s)	413, 553, 744
BpiI	GAAGAC	2 cut(s)	117, 129
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BpmI	CTGGAG	1 cut(s)	762
Bpu1102I	GCTNAGC	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	784
BsaAI	YACGTR	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	2 cut(s)	412, 684
BsaWI	WCCGGW	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	3 cut(s)	540, 554, 772
Bse1I	ACTGG	3 cut(s)	166, 223, 794
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	2 cut(s)	412, 684
BseGI	GGATG	4 cut(s)	227, 292, 544, 694
BseLI	CCNNNNNNNGG	3 cut(s)	540, 554, 772
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	3 cut(s)	166, 223, 794
BseRI	GAGGAG	1 cut(s)	136
BseYI	CCCAGC	1 cut(s)	397
Bsh1236I	CGCG	2 cut(s)	67, 168
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	3 cut(s)	165, 533, 700
BsiEI	CGRYCG	1 cut(s)	93
BsiSI	CCGG	3 cut(s)	89, 102, 784
BsiWI	CGTACG	1 cut(s)	712
BslI	CCNNNNNNNGG	3 cut(s)	540, 554, 772
BsmAI	GTCTC	3 cut(s)	48, 164, 422
BsmI	GAATGC	1 cut(s)	447
BsnI	GGCC	3 cut(s)	165, 533, 700
Bso31I	GGTCTC	1 cut(s)	422
Bsp143I	GATC	5 cut(s)	70, 228, 502, 693, 762
Bsp1720I	GCTNAGC	1 cut(s)	312
BspACI	CCGC	2 cut(s)	65, 166
BspANI	GGCC	3 cut(s)	165, 533, 700
BspCNI	CTCAG	1 cut(s)	325
BspFNI	CGCG	2 cut(s)	67, 168
BspHI	TCATGA	1 cut(s)	213
BspPI	GGATC	2 cut(s)	223, 757
BspTNI	GGTCTC	1 cut(s)	422
BsrI	ACTGG	3 cut(s)	166, 223, 794
BssECI	CCNNGG	2 cut(s)	412, 684
BssMI	GATC	5 cut(s)	70, 228, 502, 693, 762
BssNI	GRCGYC	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	684
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	775
Bst6I	CTCTTC	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	200
BstBAI	YACGTR	1 cut(s)	551
BstC8I	GCNNGC	2 cut(s)	46, 516
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	4 cut(s)	227, 292, 544, 694
BstFNI	CGCG	2 cut(s)	67, 168
BstKTI	GATC	5 cut(s)	73, 231, 505, 696, 765
BstMAI	GTCTC	3 cut(s)	48, 164, 422
BstMBI	GATC	5 cut(s)	70, 228, 502, 693, 762
BstMCI	CGRYCG	1 cut(s)	93
BstNI	CCWGG	1 cut(s)	413
BstNSI	RCATGY	1 cut(s)	751
BstSCI	CCNGG	2 cut(s)	411, 782
BstUI	CGCG	2 cut(s)	67, 168
BstV2I	GAAGAC	2 cut(s)	117, 129
BstX2I	RGATCY	1 cut(s)	762
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	762
BsuRI	GGCC	3 cut(s)	165, 533, 700
BtgZI	GCGATG	2 cut(s)	21, 120
BtsCI	GGATG	4 cut(s)	227, 292, 544, 694
BtsIMutI	CAGTG	2 cut(s)	159, 801
Cac8I	GCNNGC	2 cut(s)	46, 516
CaiI	CAGNNNCTG	1 cut(s)	766
CciI	TCATGA	1 cut(s)	213
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	713
CviAII	CATG	4 cut(s)	214, 385, 393, 748
CviQI	GTAC	1 cut(s)	713
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	5 cut(s)	72, 230, 504, 695, 764
DpnII	GATC	5 cut(s)	70, 228, 502, 693, 762
DraIII	CACNNNGTG	1 cut(s)	283
EaeI	YGGCCR	2 cut(s)	163, 531
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	684
Eco31I	GGTCTC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	684
EcoT22I	ATGCAT	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	684
FaeI	CATG	4 cut(s)	217, 388, 396, 751
FatI	CATG	4 cut(s)	213, 384, 392, 747
FbaI	TGATCA	1 cut(s)	693
Fnu4HI	GCNGC	2 cut(s)	65, 166
FokI	GGATG	4 cut(s)	234, 299, 531, 701
Fsp4HI	GCNGC	2 cut(s)	65, 166
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	2 cut(s)	65, 166
GsaI	CCCAGC	1 cut(s)	401
GsuI	CTGGAG	1 cut(s)	762
HaeIII	GGCC	3 cut(s)	165, 533, 700
HapII	CCGG	3 cut(s)	89, 102, 784
HgaI	GACGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	4 cut(s)	217, 388, 396, 751
HincII	GTYRAC	1 cut(s)	771
HindII	GTYRAC	1 cut(s)	771
HinfI	GANTC	3 cut(s)	98, 321, 779
HpaII	CCGG	3 cut(s)	89, 102, 784
HphI	GGTGA	3 cut(s)	434, 623, 674
Hpy166II	GTNNAC	1 cut(s)	771
Hpy188I	TCNGA	1 cut(s)	600
Hpy188III	TCNNGA	3 cut(s)	74, 214, 741
Hpy8I	GTNNAC	1 cut(s)	771
Hpy99I	CGWCG	3 cut(s)	25, 28, 31
HpyAV	CCTTC	3 cut(s)	529, 605, 713
HpyCH4III	ACNGT	1 cut(s)	775
HpyCH4IV	ACGT	2 cut(s)	359, 550
HpyCH4V	TGCA	2 cut(s)	404, 566
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	2 cut(s)	359, 550
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	4 cut(s)	217, 388, 396, 751
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	5 cut(s)	70, 228, 502, 693, 762
LweI	GCATC	3 cut(s)	413, 553, 744
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	2 cut(s)	359, 550
MaeIII	GTNAC	2 cut(s)	346, 589
MalI	GATC	5 cut(s)	72, 230, 504, 695, 764
MboI	GATC	5 cut(s)	70, 228, 502, 693, 762
MboII	GAAGA	5 cut(s)	111, 122, 123, 129, 286
MfeI	CAATTG	1 cut(s)	33
MflI	RGATCY	1 cut(s)	762
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	5 cut(s)	33, 620, 703, 723, 729
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	7 cut(s)	139, 154, 157, 167, 481, 610, 737
Mox20I	TGGCCA	1 cut(s)	533
Mph1103I	ATGCAT	1 cut(s)	568
MscI	TGGCCA	1 cut(s)	533
MslI	CAYNNNNRTG	1 cut(s)	752
Msp20I	TGGCCA	1 cut(s)	533
MspI	CCGG	3 cut(s)	89, 102, 784
MspR9I	CCNGG	2 cut(s)	413, 784
MunI	CAATTG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	413
MvnI	CGCG	2 cut(s)	67, 168
NciI	CCSGG	1 cut(s)	784
NdeII	GATC	5 cut(s)	70, 228, 502, 693, 762
NlaIII	CATG	4 cut(s)	217, 388, 396, 751
NsiI	ATGCAT	1 cut(s)	568
NspI	RCATGY	1 cut(s)	751
PagI	TCATGA	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PctI	GAATGC	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	321, 779
Pfl23II	CGTACG	1 cut(s)	712
PflMI	CCANNNNNTGG	1 cut(s)	554
PfoI	TCCNGGA	1 cut(s)	782
PkrI	GCNGC	2 cut(s)	66, 167
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	411
PspLI	CGTACG	1 cut(s)	712
PstNI	CAGNNNCTG	1 cut(s)	766
PsuI	RGATCY	1 cut(s)	762
RsaI	GTAC	1 cut(s)	714
RsaNI	GTAC	1 cut(s)	713
RseI	CAYNNNNRTG	1 cut(s)	752
SatI	GCNGC	2 cut(s)	65, 166
Sau3AI	GATC	5 cut(s)	70, 228, 502, 693, 762
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	413, 784
SetI	ASST	7 cut(s)	81, 117, 159, 318, 362, 553, 806
SfaNI	GCATC	3 cut(s)	413, 553, 744
SmiMI	CAYNNNNRTG	1 cut(s)	752
Sse9I	AATT	5 cut(s)	33, 620, 703, 723, 729
SsiI	CCGC	2 cut(s)	65, 166
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	411, 782
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	1 cut(s)	775
TaiI	ACGT	2 cut(s)	362, 553
TaqI	TCGA	2 cut(s)	73, 752
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	5 cut(s)	33, 620, 703, 723, 729
TauI	GCSGC	2 cut(s)	67, 168
TfiI	GAWTC	2 cut(s)	321, 779
TscAI	CASTG	2 cut(s)	166, 801
TspDTI	ATGAA	6 cut(s)	123, 202, 352, 373, 565, 573
TspGWI	ACGGA	1 cut(s)	700
TspRI	CASTG	2 cut(s)	166, 801
Van91I	CCANNNNNTGG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	703
XceI	RCATGY	1 cut(s)	751
XcmI	CCANNNNNNNNNTGG	1 cut(s)	656
XspI	CTAG	1 cut(s)	317
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.