AT2G20330

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011288
Physical Location & Seq
Reverse (-)
8772653 .. 8775668
3016 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20330.1

Sequence Viewer

Length: 1947 bp
ATGGAGGACGAATTGGAAGGTCTACGAGCTCATTTTCCTGTTTCGTTCGGTAAGACATCGAAGGTTTCGGCGTCAACTGAAGCCATTCACAGCGCAACTCGCCGCACCGATGTAGCCAACGACGCCGGAGTTTCGTCGGATATCACCACGAAGAAACCTGATTCCGATAAATCTGGATTCCCGTCTCTATCTTCCTCATCTCAAACCTGGCTCCGAAGTGTTCGCGGTCCGAATCGTAACCCTAACAGCTCCGGTGATGTAGCAATGGGTCCGCCACCGCCACCGTCATCTAAACGGACGCAAGAGGAAGAGGAGGAGGATGAAGAAGTTATGATGGGACCACCGCCACCGCCTAAGGGACTCGGGAACATTAATGATTCTGATGATGAGGGGGATATGATCGGTCCTCCGCCGCCGCCTCCTGCTGCTCGAGATTCAGATGAAGATTCAGATGACGATGATGATAATGACAACGAGGAGAATCGTTACCAGATTCCATTGAGCAACGAGATTCAGCTTAAGGGACATACAAAGATTGTTTCATCTCTCGCTGTTGATAGTGCTGGAGCTAGAGTTCTTTCAGGAAGCTATGACTACACTGTGAGAATGTACGATTTCCAAGGGATGAATTCGAGACTACAGTCTTTTAGACAGATAGAGCCATCTGAGGGACACCAAGTTCGCAGCGTGAGCTGGAGTCCCACTTCTGGTCAATTTCTATGCGTTACTGGCTCTGCACAAGCTAAGATTTTTGATCGAGATGGTCTTACTCTTGGTGAGTTTATGAAAGGAGATATGTATATTCGTGATCTGAAGAACACTAAGGGACATATTTGTGGGTTGACCTGTGGAGAATGGCATCCGAGGACTAAGGAAACCGTTCTGACTTCGTCGGAAGACGGGTCTTTGCGTATATGGGATGTTAATAACTTCCTAAGCCAAACGCAGGTTATTAAGCCTAAGCTTGCTAGACCAGGGAGGGTTCCAGTTACAACCTGTGCTTGGGACCGTGACGGAAAGCGTATCGCCGGTGGTGTAGGAGATGGATCTATACAGATTTGGAGTCTCAAGCCGGGATGGGGAAGCCGACCAGATATATACGTTGGGAAGGCCCACACTGATGATATAACCTCTGTAAAGTTCTCTAGCGATGGCAGAATTCTGTTGTCAAGGAGTTTTGATGGTTCTCTGAAGGTCTGGGACTTGCGGCAGATGAAAGAAGCTCTAAAAGTTTTCGAGGGTCTACCTAATTATTATCCTCAAACCAACGTTGCCTTTAGTCCAGACGAACAAATCATCCTGACTGGAACATCCGTCGAGAAAGACAGCACAACAGGAGGCTTGCTATGTTTCTACGATCGCACCAAACTAGAGATAGTTCAAAAAGTCGGAATCTCTCCAACTTCCAGCGTGGTGCAATGCGCTTGGCACCCGAGGTTGAATCAGATATTTGCAACATCCGGAGACAAAAGCCAAGGAGGGACTCACATTCTTTACGACCCAAGTCAGAGCGAGAGAGGCGCATGCGTCTGTGTTGCACGTGCACCAAGGAAGAAATCTGTAGATGATTACCAACCAGAACCAGTAATACACAATCCTCATGCATTACCATTGTTCAGAGACGCACCAAGCCGTAAACGAGAAAGAGAGAAAGCATTGAAGGATCCAATGAAATCCCACAAGCCTGAGATACCCATGACAGGTCCTGGTCATGGTGGAAGAGTTGGGACTACTGGTAGTGGCTTATTAACACAATATCTTCTCAAGCAAGGTGGGATGATAAAAGAGACGTGGATGGAAGAAGATCCAAGAGAAGCAATATTGAAATACGCAGAGGTTGCTGTTAAAGATCCAAAGTTTATTGCACCTGCTTACTCTCAGACCCAGCCTAAGACCATCTTCGCTAAATCTGATGACGAAGAAGAAGAAGGTGACACTAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 WD40

Protein Analysis

648

Amino Acids

71.2

Weight (kDa)

5.56

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_WDHD1_1st PF24817 168 - 254 1.7e-07 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 170 - 248 3.5e-06 CDC20/Fizzy WD40 domain
Beta-prop_EML PF23409 175 - 438 3.2e-09 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3 PF25174 176 - 245 2.7e-06 THOC3 beta-propeller domain
Beta-prop_WDR35_TULP_N PF24797 218 - 403 6.5e-06 WDR35/TULP4 N-terminal
Beta-prop_THOC3 PF25174 225 - 310 2.1e-06 THOC3 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 267 - 406 3.1e-12 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 271 - 437 2.3e-22 WDR5 beta-propeller domain
WD40_Prp19 PF24814 280 - 438 8.7e-15 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 282 - 438 5.1e-16 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 287 - 433 4.8e-12 Echinoderm microtubule-associated protein second beta-propeller
WDR55 PF24796 289 - 404 1.4e-06 WDR55
Beta-prop_WDR36-Utp21_2nd PF25168 289 - 435 1.1e-08 WDR36/Utp21 second beta-propeller domain
WDR90_beta-prop_4th PF23342 292 - 398 7e-06 WDR90, 4th beta-propeller
Beta-prop_TEP1_2nd PF25047 294 - 417 9e-12 TEP-1 second beta-propeller
Beta-prop_WDR3_2nd PF25172 327 - 409 5.6e-06 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 328 - 417 5e-09 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 330 - 491 4.8e-18 THOC3 beta-propeller domain
WD40 PF00400 369 - 401 9.5e-08 WD domain, G-beta repeat
WD40_CDC20-Fz PF24807 370 - 492 7.7e-06 CDC20/Fizzy WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20330
fragaria_vesca FvH4_2g20290 FvH4_2g20290
malus_domestica MD10G1174900.v1.1
prunus_persica Prupe.8G213600_v2.0.a1
pyrus_communis pycom05g17160 pycom10g15070
rosa_chinensis RchiOBHm_Chr6g0286091 RchiOBHm_Chr6g0286201
rosa_laevigata RLG00000012583
rosa_multiflora Rmu_sc0028702.1_g000001
rosa_roxburghii Rroxscaffold_7G00182460
rosa_rugosa Rorug06G0178900
rosa_samantha Rh6AG291300 Rh6BG294600 Rh6CG294200 Rh6CG294800 Rh6DG286200 Rh6DG286800
rosa_wichuraiana Rw6G025100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1876
Acc36I ACCTGC 2 cut(s) 937, 1876
AccB1I GGYRCC 1 cut(s) 1428
AccI GTMKAC 2 cut(s) 22, 1243
AccII CGCG 1 cut(s) 225
AccIII TCCGGA 1 cut(s) 1460
AclI AACGTT 1 cut(s) 1269
AclWI GGATC 5 cut(s) 1054, 1658, 1671, 1799, 1844
AcsI RAATTY 2 cut(s) 628, 1158
AcuI CTGAAG 3 cut(s) 99, 833, 1211
AcvI CACGTG 1 cut(s) 1541
AcyI GRCGYC 2 cut(s) 71, 123
AfaI GTAC 1 cut(s) 611
AfiI CCNNNNNNNGG 8 cut(s) 356, 668, 707, 946, 1002, 1079, 1700, 1712
AflII CTTAAG 1 cut(s) 518
AgsI TTSAA 4 cut(s) 1382, 1441, 1660, 1825
AjiI CACGTC 1 cut(s) 1791
AjnI CCWGG 3 cut(s) 206, 973, 1705
AloI GAACNNNNNNTCC 6 cut(s) 558, 590, 663, 695, 1281, 1313
AluBI AGCT 9 cut(s) 29, 249, 517, 569, 588, 693, 743, 964, 1223
AluI AGCT 9 cut(s) 29, 249, 517, 569, 588, 693, 743, 964, 1223
Alw21I GWGCWC 2 cut(s) 31, 1546
Alw26I GTCTC 6 cut(s) 189, 628, 1070, 1458, 1614, 1781
Alw44I GTGCAC 1 cut(s) 1542
AlwI GGATC 5 cut(s) 1054, 1658, 1671, 1799, 1844
AlwNI CAGNNNCTG 1 cut(s) 1706
Ama87I CYCGRG 3 cut(s) 362, 429, 1432
Aor13HI TCCGGA 1 cut(s) 1460
AoxI GGCC 1 cut(s) 1110
ApaLI GTGCAC 1 cut(s) 1542
ApeKI GCWGC 2 cut(s) 425, 684
ApoI RAATTY 2 cut(s) 628, 1158
ArsI GACNNNNNNTTYG 2 cut(s) 663, 695
AseI ATTAAT 1 cut(s) 372
Asp700I GAANNNNTTC 2 cut(s) 84, 879
AspLEI GCGC 3 cut(s) 95, 1424, 1523
AspS9I GGNCC 7 cut(s) 227, 269, 338, 404, 1006, 1111, 1703
AsuC2I CCSGG 1 cut(s) 1074
AsuHPI GGTGA 4 cut(s) 136, 266, 788, 1943
AvaI CYCGRG 3 cut(s) 362, 429, 1432
AvaII GGWCC 6 cut(s) 227, 269, 338, 404, 1006, 1703
AxyI CCTNAGG 1 cut(s) 354
BaeGI GKGCMC 1 cut(s) 1546
BamHI GGATCC 1 cut(s) 1663
BanI GGYRCC 1 cut(s) 1428
BanII GRGCYC 1 cut(s) 31
BbrPI CACGTG 1 cut(s) 1541
BbsI GAAGAC 1 cut(s) 903
Bbv12I GWGCWC 2 cut(s) 31, 1546
BbvI GCAGC 2 cut(s) 412, 696
BccI CCATC 9 cut(s) 328, 670, 755, 1037, 1071, 1145, 1175, 1789, 1904
BceAI ACGGC 1 cut(s) 1617
BciT130I CCWGG 3 cut(s) 208, 975, 1707
BcnI CCSGG 1 cut(s) 1074
BcoDI GTCTC 6 cut(s) 189, 628, 1070, 1458, 1614, 1781
BfaI CTAG 4 cut(s) 570, 969, 1146, 1370
BfmI CTRYAG 2 cut(s) 638, 1560
BfrI CTTAAG 1 cut(s) 518
BfuAI ACCTGC 2 cut(s) 937, 1876
BisI GCNGC 6 cut(s) 103, 413, 416, 426, 685, 1208
BlsI GCNGC 6 cut(s) 104, 414, 417, 427, 686, 1209
Bme1390I CCNGG 4 cut(s) 208, 975, 1074, 1707
Bme18I GGWCC 6 cut(s) 227, 269, 338, 404, 1006, 1703
BmeT110I CYCGRG 3 cut(s) 362, 429, 1432
BmgBI CACGTC 1 cut(s) 1791
BmgT120I GGNCC 7 cut(s) 227, 269, 338, 404, 1006, 1111, 1703
BmiI GGNNCC 7 cut(s) 212, 270, 339, 984, 1007, 1430, 1665
BmrFI CCNGG 4 cut(s) 208, 975, 1074, 1707
BmsI GCATC 1 cut(s) 868
BoxI GACNNNNGTC 2 cut(s) 640, 1503
BpiI GAAGAC 1 cut(s) 903
BpmI CTGGAG 2 cut(s) 585, 715
Bpu10I CCTNAGC 2 cut(s) 935, 960
BpuEI CTTGAG 2 cut(s) 1052, 1748
BpuMI CCSGG 1 cut(s) 1074
BsaAI YACGTR 1 cut(s) 1541
BsaHI GRCGYC 2 cut(s) 71, 123
BsaJI CCNNGG 6 cut(s) 619, 863, 974, 1433, 1474, 1547
BsaWI WCCGGW 2 cut(s) 251, 1460
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 8 cut(s) 356, 668, 707, 946, 1002, 1079, 1700, 1712
Bse118I RCCGGY 1 cut(s) 1028
Bse1I ACTGG 5 cut(s) 733, 986, 1309, 1583, 1738
Bse21I CCTNAGG 1 cut(s) 354
Bse3DI GCAATG 2 cut(s) 270, 1424
BseAI TCCGGA 1 cut(s) 1460
BseBI CCWGG 3 cut(s) 208, 975, 1707
BseDI CCNNGG 6 cut(s) 619, 863, 974, 1433, 1474, 1547
BseLI CCNNNNNNNGG 8 cut(s) 356, 668, 707, 946, 1002, 1079, 1700, 1712
BseMI GCAATG 2 cut(s) 270, 1424
BseMII CTCAG 3 cut(s) 657, 1677, 1892
BseNI ACTGG 5 cut(s) 733, 986, 1309, 1583, 1738
BseRI GAGGAG 3 cut(s) 326, 329, 491
BseSI GKGCMC 1 cut(s) 1546
BseXI GCAGC 2 cut(s) 412, 696
BseYI CCCAGC 1 cut(s) 1884
BsgI GTGCAG 1 cut(s) 720
Bsh1236I CGCG 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 1360
BshFI GGCC 1 cut(s) 1112
BshNI GGYRCC 1 cut(s) 1428
BsiEI CGRYCG 1 cut(s) 1360
BsiHKAI GWGCWC 2 cut(s) 31, 1546
BsiHKCI CYCGRG 3 cut(s) 362, 429, 1432
BsiSI CCGG 5 cut(s) 126, 252, 1029, 1073, 1461
BslI CCNNNNNNNGG 8 cut(s) 356, 668, 707, 946, 1002, 1079, 1700, 1712
BsmAI GTCTC 6 cut(s) 189, 628, 1070, 1458, 1614, 1781
BsmBI CGTCTC 3 cut(s) 189, 1614, 1781
BsnI GGCC 1 cut(s) 1112
BsoBI CYCGRG 3 cut(s) 362, 429, 1432
Bsp1286I GDGCHC 2 cut(s) 31, 1546
Bsp13I TCCGGA 1 cut(s) 1460
Bsp143I GATC 8 cut(s) 399, 754, 808, 1046, 1357, 1663, 1804, 1849
BspANI GGCC 1 cut(s) 1112
BspCNI CTCAG 3 cut(s) 658, 1678, 1891
BspEI TCCGGA 1 cut(s) 1460
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 7 cut(s) 212, 270, 339, 984, 1007, 1430, 1665
BspMI ACCTGC 2 cut(s) 937, 1876
BspPI GGATC 5 cut(s) 1054, 1658, 1671, 1799, 1844
BspT107I GGYRCC 1 cut(s) 1428
BspTI CTTAAG 1 cut(s) 518
BsrDI GCAATG 2 cut(s) 270, 1424
BsrFI RCCGGY 1 cut(s) 1028
BsrI ACTGG 5 cut(s) 733, 986, 1309, 1583, 1738
BssAI RCCGGY 1 cut(s) 1028
BssECI CCNNGG 6 cut(s) 619, 863, 974, 1433, 1474, 1547
BssMI GATC 8 cut(s) 399, 754, 808, 1046, 1357, 1663, 1804, 1849
BssNI GRCGYC 2 cut(s) 71, 123
BssT1I CCWWGG 3 cut(s) 619, 1474, 1547
Bst2UI CCWGG 3 cut(s) 208, 975, 1707
Bst4CI ACNGT 5 cut(s) 285, 601, 642, 880, 1010
Bst6I CTCTTC 2 cut(s) 303, 1714
BstACI GRCGYC 2 cut(s) 71, 123
BstAFI CTTAAG 1 cut(s) 518
BstAPI GCANNNNNTGC 1 cut(s) 1838
BstBAI YACGTR 1 cut(s) 1541
BstC8I GCNNGC 3 cut(s) 966, 1343, 1525
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 3 cut(s) 95, 1424, 1523
BstKTI GATC 8 cut(s) 402, 757, 811, 1049, 1360, 1666, 1807, 1852
BstMAI GTCTC 6 cut(s) 189, 628, 1070, 1458, 1614, 1781
BstMBI GATC 8 cut(s) 399, 754, 808, 1046, 1357, 1663, 1804, 1849
BstMCI CGRYCG 1 cut(s) 1360
BstMWI GCNNNNNNNGC 6 cut(s) 99, 122, 690, 729, 1518, 1838
BstNI CCWGG 3 cut(s) 208, 975, 1707
BstNSI RCATGY 1 cut(s) 1527
BstPAI GACNNNNGTC 2 cut(s) 640, 1503
BstSCI CCNGG 4 cut(s) 206, 973, 1072, 1705
BstSFI CTRYAG 2 cut(s) 638, 1560
BstSLI GKGCMC 1 cut(s) 1546
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 412, 696
BstV2I GAAGAC 1 cut(s) 903
BstX2I RGATCY 4 cut(s) 1046, 1663, 1804, 1849
BstYI RGATCY 4 cut(s) 1046, 1663, 1804, 1849
Bsu36I CCTNAGG 1 cut(s) 354
BsuRI GGCC 1 cut(s) 1112
BtgZI GCGATG 1 cut(s) 1164
BtrI CACGTC 1 cut(s) 1791
BtsIMutI CAGTG 2 cut(s) 597, 1116
BveI ACCTGC 2 cut(s) 937, 1876
Cac8I GCNNGC 3 cut(s) 966, 1343, 1525
CaiI CAGNNNCTG 1 cut(s) 1706
CfoI GCGC 3 cut(s) 95, 1424, 1523
Cfr10I RCCGGY 1 cut(s) 1028
Cfr13I GGNCC 7 cut(s) 227, 269, 338, 404, 1006, 1111, 1703
CpoI CGGWCCG 1 cut(s) 227
CseI GACGC 5 cut(s) 60, 131, 307, 1516, 1631
Csp6I GTAC 1 cut(s) 610
CspCI CAANNNNNGTGG 2 cut(s) 1753, 1788
CspI CGGWCCG 1 cut(s) 227
CviAII CATG 4 cut(s) 1524, 1601, 1696, 1712
CviQI GTAC 1 cut(s) 610
DpnI GATC 8 cut(s) 401, 756, 810, 1048, 1359, 1665, 1806, 1851
DpnII GATC 8 cut(s) 399, 754, 808, 1046, 1357, 1663, 1804, 1849
Eam1104I CTCTTC 2 cut(s) 303, 1714
EarI CTCTTC 2 cut(s) 303, 1714
EciI GGCGGA 2 cut(s) 261, 399
Ecl136II GAGCTC 1 cut(s) 29
Eco130I CCWWGG 3 cut(s) 619, 1474, 1547
Eco24I GRGCYC 1 cut(s) 31
Eco32I GATATC 1 cut(s) 142
Eco47I GGWCC 6 cut(s) 227, 269, 338, 404, 1006, 1703
Eco53kI GAGCTC 1 cut(s) 29
Eco57I CTGAAG 3 cut(s) 99, 833, 1211
Eco72I CACGTG 1 cut(s) 1541
Eco81I CCTNAGG 1 cut(s) 354
Eco88I CYCGRG 3 cut(s) 362, 429, 1432
EcoICRI GAGCTC 1 cut(s) 29
EcoO109I RGGNCCY 1 cut(s) 1703
EcoRI GAATTC 2 cut(s) 628, 1158
EcoRII CCWGG 3 cut(s) 206, 973, 1705
EcoRV GATATC 1 cut(s) 142
EcoT14I CCWWGG 3 cut(s) 619, 1474, 1547
EcoT22I ATGCAT 1 cut(s) 1606
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 3 cut(s) 619, 1474, 1547
Esp3I CGTCTC 3 cut(s) 189, 1614, 1781
FaeI CATG 4 cut(s) 1527, 1604, 1699, 1715
FalI AAGNNNNNCTT 2 cut(s) 1883, 1915
FatI CATG 4 cut(s) 1523, 1600, 1695, 1711
FblI GTMKAC 2 cut(s) 22, 1243
Fnu4HI GCNGC 6 cut(s) 103, 413, 416, 426, 685, 1208
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 6 cut(s) 103, 413, 416, 426, 685, 1208
FspBI CTAG 4 cut(s) 570, 969, 1146, 1370
GlaI GCGC 3 cut(s) 94, 1423, 1522
GluI GCNGC 6 cut(s) 103, 413, 416, 426, 685, 1208
GsaI CCCAGC 1 cut(s) 1888
GsuI CTGGAG 2 cut(s) 585, 715
HaeIII GGCC 1 cut(s) 1112
HapII CCGG 5 cut(s) 126, 252, 1029, 1073, 1461
HgaI GACGC 5 cut(s) 60, 131, 307, 1516, 1631
HhaI GCGC 3 cut(s) 95, 1424, 1523
Hin1I GRCGYC 2 cut(s) 71, 123
Hin1II CATG 4 cut(s) 1527, 1604, 1699, 1715
Hin6I GCGC 3 cut(s) 93, 1422, 1521
HinP1I GCGC 3 cut(s) 93, 1422, 1521
HincII GTYRAC 2 cut(s) 75, 843
HindII GTYRAC 2 cut(s) 75, 843
HindIII AAGCTT 1 cut(s) 962
HpaII CCGG 5 cut(s) 126, 252, 1029, 1073, 1461
HphI GGTGA 4 cut(s) 136, 266, 788, 1943
Hpy166II GTNNAC 6 cut(s) 23, 75, 843, 1244, 1544, 1637
Hpy8I GTNNAC 6 cut(s) 23, 75, 843, 1244, 1544, 1637
Hpy99I CGWCG 4 cut(s) 125, 139, 895, 1319
HpyAV CCTTC 6 cut(s) 11, 55, 1102, 1186, 1654, 1922
HpyCH4III ACNGT 5 cut(s) 285, 601, 642, 880, 1010
HpyCH4IV ACGT 4 cut(s) 1101, 1269, 1540, 1790
HpyCH4V TGCA 7 cut(s) 737, 1417, 1454, 1538, 1544, 1604, 1865
HpyF10VI GCNNNNNNNGC 6 cut(s) 99, 122, 690, 729, 1518, 1838
HpySE526I ACGT 4 cut(s) 1101, 1269, 1540, 1790
Hsp92I GRCGYC 2 cut(s) 71, 123
Hsp92II CATG 4 cut(s) 1527, 1604, 1699, 1715
HspAI GCGC 3 cut(s) 93, 1422, 1521
Kpn2I TCCGGA 1 cut(s) 1460
Kzo9I GATC 8 cut(s) 399, 754, 808, 1046, 1357, 1663, 1804, 1849
LmnI GCTCC 3 cut(s) 216, 254, 566
Lsp1109I GCAGC 2 cut(s) 412, 696
LweI GCATC 1 cut(s) 868
MaeI CTAG 4 cut(s) 570, 969, 1146, 1370
MaeII ACGT 4 cut(s) 1101, 1269, 1540, 1790
MaeIII GTNAC 6 cut(s) 236, 485, 724, 988, 1010, 1931
MalI GATC 8 cut(s) 401, 756, 810, 1048, 1359, 1665, 1806, 1851
MboI GATC 8 cut(s) 399, 754, 808, 1046, 1357, 1663, 1804, 1849
MflI RGATCY 4 cut(s) 1046, 1663, 1804, 1849
MhlI GDGCHC 2 cut(s) 31, 1546
MluCI AATT 5 cut(s) 11, 628, 713, 1158, 1249
MlyI GAGTC 4 cut(s) 354, 706, 1072, 1477
MmeI TCCRAC 4 cut(s) 117, 873, 1369, 1424
Mph1103I ATGCAT 1 cut(s) 1606
MroI TCCGGA 1 cut(s) 1460
MroXI GAANNNNTTC 2 cut(s) 84, 879
MseI TTAA 6 cut(s) 372, 519, 924, 954, 1748, 1845
MslI CAYNNNNRTG 2 cut(s) 834, 1119
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 5 cut(s) 126, 252, 1029, 1073, 1461
MspR9I CCNGG 4 cut(s) 208, 975, 1074, 1707
MvaI CCWGG 3 cut(s) 208, 975, 1707
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 6 cut(s) 99, 122, 690, 729, 1518, 1838
NciI CCSGG 1 cut(s) 1074
NdeII GATC 8 cut(s) 399, 754, 808, 1046, 1357, 1663, 1804, 1849
NlaIII CATG 4 cut(s) 1527, 1604, 1699, 1715
NlaIV GGNNCC 7 cut(s) 212, 270, 339, 984, 1007, 1430, 1665
NmuCI GTSAC 2 cut(s) 1010, 1931
NsiI ATGCAT 1 cut(s) 1606
NspI RCATGY 1 cut(s) 1527
PaeI GCATGC 1 cut(s) 1527
PaeR7I CTCGAG 1 cut(s) 429
PaqCI CACCTGC 1 cut(s) 1876
PdmI GAANNNNTTC 2 cut(s) 84, 879
PflFI GACNNNGTC 1 cut(s) 889
PkrI GCNGC 6 cut(s) 104, 414, 417, 427, 686, 1209
Ple19I CGATCG 1 cut(s) 1360
PleI GAGTC 4 cut(s) 354, 705, 1071, 1477
PmaCI CACGTG 1 cut(s) 1541
PmlI CACGTG 1 cut(s) 1541
PpsI GAGTC 4 cut(s) 354, 705, 1071, 1477
Ppu21I YACGTR 1 cut(s) 1541
PpuMI RGGWCCY 1 cut(s) 1703
PshAI GACNNNNGTC 2 cut(s) 640, 1503
PshBI ATTAAT 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 31
Psp1406I AACGTT 1 cut(s) 1269
Psp5II RGGWCCY 1 cut(s) 1703
Psp6I CCWGG 3 cut(s) 206, 973, 1705
PspCI CACGTG 1 cut(s) 1541
PspFI CCCAGC 1 cut(s) 1884
PspGI CCWGG 3 cut(s) 206, 973, 1705
PspN4I GGNNCC 7 cut(s) 212, 270, 339, 984, 1007, 1430, 1665
PspPI GGNCC 7 cut(s) 227, 269, 338, 404, 1006, 1111, 1703
PspPPI RGGWCCY 1 cut(s) 1703
PsrI GAACNNNNNNTAC 2 cut(s) 1572, 1604
PstNI CAGNNNCTG 1 cut(s) 1706
PsuI RGATCY 4 cut(s) 1046, 1663, 1804, 1849
PsyI GACNNNGTC 1 cut(s) 889
PvuI CGATCG 1 cut(s) 1360
RsaI GTAC 1 cut(s) 611
RsaNI GTAC 1 cut(s) 610
RseI CAYNNNNRTG 2 cut(s) 834, 1119
Rsr2I CGGWCCG 1 cut(s) 227
RsrII CGGWCCG 1 cut(s) 227
SacI GAGCTC 1 cut(s) 31
SaqAI TTAA 6 cut(s) 372, 519, 924, 954, 1748, 1845
SatI GCNGC 6 cut(s) 103, 413, 416, 426, 685, 1208
Sau3AI GATC 8 cut(s) 399, 754, 808, 1046, 1357, 1663, 1804, 1849
Sau96I GGNCC 7 cut(s) 227, 269, 338, 404, 1006, 1111, 1703
SchI GAGTC 4 cut(s) 354, 706, 1072, 1477
ScrFI CCNGG 4 cut(s) 208, 975, 1074, 1707
SduI GDGCHC 2 cut(s) 31, 1546
SfaNI GCATC 1 cut(s) 868
SfcI CTRYAG 2 cut(s) 638, 1560
Sfr274I CTCGAG 1 cut(s) 429
SgrAI CRCCGGYG 1 cut(s) 1028
SinI GGWCC 6 cut(s) 227, 269, 338, 404, 1006, 1703
SlaI CTCGAG 1 cut(s) 429
SmiMI CAYNNNNRTG 2 cut(s) 834, 1119
SmlI CTYRAG 4 cut(s) 429, 518, 1067, 1763
SmoI CTYRAG 4 cut(s) 429, 518, 1067, 1763
SphI GCATGC 1 cut(s) 1527
Sse9I AATT 5 cut(s) 11, 628, 713, 1158, 1249
SspI AATATT 1 cut(s) 1821
SspMI CTAG 4 cut(s) 570, 969, 1146, 1370
SstI GAGCTC 1 cut(s) 31
StyD4I CCNGG 4 cut(s) 206, 973, 1072, 1705
StyI CCWWGG 3 cut(s) 619, 1474, 1547
TaaI ACNGT 5 cut(s) 285, 601, 642, 880, 1010
TaiI ACGT 4 cut(s) 1104, 1272, 1543, 1793
TaqI TCGA 6 cut(s) 59, 430, 632, 757, 1236, 1317
TaqII GACCGA 1 cut(s) 392
TasI AATT 5 cut(s) 11, 628, 713, 1158, 1249
TauI GCSGC 4 cut(s) 105, 415, 418, 1210
Tru1I TTAA 6 cut(s) 372, 519, 924, 954, 1748, 1845
Tru9I TTAA 6 cut(s) 372, 519, 924, 954, 1748, 1845
TscAI CASTG 2 cut(s) 604, 1123
TseFI GTSAC 2 cut(s) 1010, 1931
TseI GCWGC 2 cut(s) 425, 684
Tsp45I GTSAC 2 cut(s) 1010, 1931
TspDTI ATGAA 7 cut(s) 336, 456, 531, 641, 800, 1229, 1685
TspGWI ACGGA 3 cut(s) 310, 1029, 1303
TspRI CASTG 2 cut(s) 604, 1123
Tth111I GACNNNGTC 1 cut(s) 889
Vha464I CTTAAG 1 cut(s) 518
VneI GTGCAC 1 cut(s) 1542
VpaK11BI GGWCC 6 cut(s) 227, 269, 338, 404, 1006, 1703
VspI ATTAAT 1 cut(s) 372
XapI RAATTY 2 cut(s) 628, 1158
XceI RCATGY 1 cut(s) 1527
XhoI CTCGAG 1 cut(s) 429
XmiI GTMKAC 2 cut(s) 22, 1243
XmnI GAANNNNTTC 2 cut(s) 84, 879
XspI CTAG 4 cut(s) 570, 969, 1146, 1370
Zsp2I ATGCAT 1 cut(s) 1606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.